Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3e/4c4ac6f1b24187d163808f1f5d5769/aih-tih-sc-d1f1a3-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/c4094dc2682afc05c42038b9c2fa45/aih-tih-sc-d1f1a3-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/13e09fc7cafcd21771ec686a90bdf2/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/13e09fc7cafcd21771ec686a90bdf2/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
TLK2P1--AC110079.1
starfusion
TLK2--AC240565.1
starfusion
PRSS27--TPSB2
starfusion
AC013268.1--MALL
starfusion
PCDHGB2--PCDHGC3
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGB2--PCDHGA9
arriba
TVP23C--CDRT4
arriba
AC092807.3--DDAH1
arriba
STON1--GTF2A1L
arriba
PCDHA10--PCDHAC1
arriba
PCDHA10--PCDHAC2
arriba
PCDHA10--PCDHA13
arriba
GTF2A1L--STON1-GTF2A1L
arriba

  0%|          | 0/21 [00:00<?, ?it/s]
Processing TLK2P1--AC110079.1:   0%|          | 0/21 [00:00<?, ?it/s]
Processing TLK2P1--AC110079.1:   5%|▍         | 1/21 [00:00<00:02,  9.26it/s]
Processing TLK2--AC240565.1:   5%|▍         | 1/21 [00:00<00:02,  9.26it/s]  
Processing TLK2--AC240565.1:  10%|▉         | 2/21 [00:00<00:02,  9.49it/s]
Processing PRSS27--TPSB2:  10%|▉         | 2/21 [00:00<00:02,  9.49it/s]   
Processing PRSS27--TPSB2:  14%|█▍        | 3/21 [00:00<00:01,  9.56it/s]
Processing AC013268.1--MALL:  14%|█▍        | 3/21 [00:00<00:01,  9.56it/s]
Processing AC013268.1--MALL:  19%|█▉        | 4/21 [00:00<00:01,  9.60it/s]
Processing PCDHGB2--PCDHGC3:  19%|█▉        | 4/21 [00:00<00:01,  9.60it/s]
Processing PCDHGB2--PCDHGC3:  24%|██▍       | 5/21 [00:00<00:01,  9.62it/s]
Processing PCDHGB2--PCDHGC4:  24%|██▍       | 5/21 [00:00<00:01,  9.62it/s]
Processing PCDHGB2--PCDHGC4:  29%|██▊       | 6/21 [00:00<00:01,  9.63it/s]
Processing PCDHGB2--PCDHGC5:  29%|██▊       | 6/21 [00:00<00:01,  9.63it/s]
Processing PCDHGB2--PCDHGC5:  33%|███▎      | 7/21 [00:00<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGA10:  33%|███▎      | 7/21 [00:00<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGA10:  38%|███▊      | 8/21 [00:00<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGA8:  38%|███▊      | 8/21 [00:00<00:01,  9.64it/s] 
Processing PCDHGB2--PCDHGA8:  43%|████▎     | 9/21 [00:00<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGB6:  43%|████▎     | 9/21 [00:00<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGB6:  48%|████▊     | 10/21 [00:01<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA11:  48%|████▊     | 10/21 [00:01<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA11:  52%|█████▏    | 11/21 [00:01<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGB7:  52%|█████▏    | 11/21 [00:01<00:01,  9.65it/s] 
Processing PCDHGB2--PCDHGB7:  57%|█████▋    | 12/21 [00:01<00:00,  9.65it/s]
Processing PCDHGB2--PCDHGA12:  57%|█████▋    | 12/21 [00:01<00:00,  9.65it/s]
Processing PCDHGB2--PCDHGA12:  62%|██████▏   | 13/21 [00:01<00:00,  9.65it/s]
Processing PCDHGB2--PCDHGA9:  62%|██████▏   | 13/21 [00:01<00:00,  9.65it/s] 
Processing PCDHGB2--PCDHGA9:  67%|██████▋   | 14/21 [00:01<00:00,  9.65it/s]
Processing TVP23C--CDRT4:  67%|██████▋   | 14/21 [00:01<00:00,  9.65it/s]   
Processing TVP23C--CDRT4:  71%|███████▏  | 15/21 [00:01<00:00,  9.65it/s]
Processing AC092807.3--DDAH1:  71%|███████▏  | 15/21 [00:01<00:00,  9.65it/s]
Processing AC092807.3--DDAH1:  76%|███████▌  | 16/21 [00:01<00:00,  9.65it/s]
Processing STON1--GTF2A1L:  76%|███████▌  | 16/21 [00:01<00:00,  9.65it/s]   
Processing STON1--GTF2A1L:  81%|████████  | 17/21 [00:01<00:00,  9.65it/s]
Processing PCDHA10--PCDHAC1:  81%|████████  | 17/21 [00:01<00:00,  9.65it/s]
Processing PCDHA10--PCDHAC1:  86%|████████▌ | 18/21 [00:01<00:00,  9.65it/s]
Processing PCDHA10--PCDHAC2:  86%|████████▌ | 18/21 [00:01<00:00,  9.65it/s]
Processing PCDHA10--PCDHAC2:  90%|█████████ | 19/21 [00:01<00:00,  9.65it/s]
Processing PCDHA10--PCDHA13:  90%|█████████ | 19/21 [00:01<00:00,  9.65it/s]
Processing PCDHA10--PCDHA13:  95%|█████████▌| 20/21 [00:02<00:00,  9.65it/s]
Processing GTF2A1L--STON1-GTF2A1L:  95%|█████████▌| 20/21 [00:02<00:00,  9.65it/s]
Processing GTF2A1L--STON1-GTF2A1L: 100%|██████████| 21/21 [00:02<00:00,  9.65it/s]
Processing GTF2A1L--STON1-GTF2A1L: 100%|██████████| 21/21 [00:02<00:00,  9.63it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory