File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9f/55a97f722bd03b70a382e803ad4a3e/.command.log
Size
1.7 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-3282fd-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0d/5661842ebc4c8860bf2bee14fe5b5c/aih-tih-sc-3282fd-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9f/55a97f722bd03b70a382e803ad4a3e/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9f/55a97f722bd03b70a382e803ad4a3e/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/05be4c8f536f50928d4c014614ef7b/aih-tih-sc-3282fd-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
NOS1AP--CD244
starfusion
arriba
MTPAP--ANKRD26
starfusion
arriba
TVP23C--CDRT4
arriba

  0%|          | 0/3 [00:00<?, ?it/s]
Processing NOS1AP--CD244:   0%|          | 0/3 [00:00<?, ?it/s]
Processing NOS1AP--CD244:  33%|███▎      | 1/3 [00:00<00:00,  9.26it/s]
Processing MTPAP--ANKRD26:  33%|███▎      | 1/3 [00:00<00:00,  9.26it/s]
Processing MTPAP--ANKRD26:  67%|██████▋   | 2/3 [00:00<00:00,  9.45it/s]
Processing TVP23C--CDRT4:  67%|██████▋   | 2/3 [00:00<00:00,  9.45it/s] 
Processing TVP23C--CDRT4: 100%|██████████| 3/3 [00:00<00:00,  9.49it/s]
Processing TVP23C--CDRT4: 100%|██████████| 3/3 [00:00<00:00,  9.45it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory