File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/c412d0359ea3509ea48d2894a568a6/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 10:10:09
                             Started mapping on |	Jun 08 10:16:47
                                    Finished on |	Jun 08 11:30:13
       Mapping speed, Million of reads per hour |	242.58

                          Number of input reads |	296885139
                      Average input read length |	241
                                    UNIQUE READS:
                   Uniquely mapped reads number |	284589121
                        Uniquely mapped reads % |	95.86%
                          Average mapped length |	240.85
                       Number of splices: Total |	291944738
            Number of splices: Annotated (sjdb) |	287650419
                       Number of splices: GT/AG |	288573352
                       Number of splices: GC/AG |	1723600
                       Number of splices: AT/AC |	183701
               Number of splices: Non-canonical |	1464085
                      Mismatch rate per base, % |	0.25%
                         Deletion rate per base |	0.03%
                        Deletion average length |	1.99
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.67
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	9048312
             % of reads mapped to multiple loci |	3.05%
        Number of reads mapped to too many loci |	916214
             % of reads mapped to too many loci |	0.31%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	1888329
                 % of reads unmapped: too short |	0.64%
                Number of reads unmapped: other |	443163
                     % of reads unmapped: other |	0.15%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%