File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/29/3df659aa1d92911457209a4845934b/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 10:36:15
                             Started mapping on |	Jun 08 10:42:43
                                    Finished on |	Jun 08 11:52:40
       Mapping speed, Million of reads per hour |	254.08

                          Number of input reads |	296209672
                      Average input read length |	251
                                    UNIQUE READS:
                   Uniquely mapped reads number |	285237692
                        Uniquely mapped reads % |	96.30%
                          Average mapped length |	250.80
                       Number of splices: Total |	359651252
            Number of splices: Annotated (sjdb) |	355511816
                       Number of splices: GT/AG |	356723440
                       Number of splices: GC/AG |	1638472
                       Number of splices: AT/AC |	140977
               Number of splices: Non-canonical |	1148363
                      Mismatch rate per base, % |	0.19%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.94
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.85
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	7329183
             % of reads mapped to multiple loci |	2.47%
        Number of reads mapped to too many loci |	370950
             % of reads mapped to too many loci |	0.13%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	2887936
                 % of reads unmapped: too short |	0.97%
                Number of reads unmapped: other |	383911
                     % of reads unmapped: other |	0.13%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%