File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/eb886420c0e05494a8853c7688829e/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 09:01:18
                             Started mapping on |	Jun 08 09:07:59
                                    Finished on |	Jun 08 09:44:25
       Mapping speed, Million of reads per hour |	279.66

                          Number of input reads |	169818666
                      Average input read length |	247
                                    UNIQUE READS:
                   Uniquely mapped reads number |	160146486
                        Uniquely mapped reads % |	94.30%
                          Average mapped length |	247.20
                       Number of splices: Total |	154980669
            Number of splices: Annotated (sjdb) |	152458115
                       Number of splices: GT/AG |	153100413
                       Number of splices: GC/AG |	1097937
                       Number of splices: AT/AC |	119359
               Number of splices: Non-canonical |	662960
                      Mismatch rate per base, % |	0.27%
                         Deletion rate per base |	0.02%
                        Deletion average length |	2.09
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.71
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	7850453
             % of reads mapped to multiple loci |	4.62%
        Number of reads mapped to too many loci |	407007
             % of reads mapped to too many loci |	0.24%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	1184408
                 % of reads unmapped: too short |	0.70%
                Number of reads unmapped: other |	230312
                     % of reads unmapped: other |	0.14%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%