File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/d789ec62ffe21d4e42264d120e8118/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 09:59:02
                             Started mapping on |	Jun 08 10:05:29
                                    Finished on |	Jun 08 10:45:34
       Mapping speed, Million of reads per hour |	358.63

                          Number of input reads |	239583971
                      Average input read length |	240
                                    UNIQUE READS:
                   Uniquely mapped reads number |	228408090
                        Uniquely mapped reads % |	95.34%
                          Average mapped length |	239.59
                       Number of splices: Total |	200997088
            Number of splices: Annotated (sjdb) |	197883035
                       Number of splices: GT/AG |	198453162
                       Number of splices: GC/AG |	1527774
                       Number of splices: AT/AC |	158015
               Number of splices: Non-canonical |	858137
                      Mismatch rate per base, % |	0.30%
                         Deletion rate per base |	0.02%
                        Deletion average length |	1.99
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.84
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	8415045
             % of reads mapped to multiple loci |	3.51%
        Number of reads mapped to too many loci |	686549
             % of reads mapped to too many loci |	0.29%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	1728933
                 % of reads unmapped: too short |	0.72%
                Number of reads unmapped: other |	345354
                     % of reads unmapped: other |	0.14%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%