File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/1ae4e290e45176459d3e26932039bc/.command.log
Size
4.0 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-f8efb2-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/1ae4e290e45176459d3e26932039bc/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/1ae4e290e45176459d3e26932039bc/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/68/04ce3f1ce4e02a4484a12432d70210/aih-tih-sc-f8efb2-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/ae59711b5552012dac81f92c832040/aih-tih-sc-f8efb2-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
TOX2--TSHZ2
starfusion
arriba
MAP1LC3A--TTLL9
starfusion
arriba
TLK2P1--AC110079.1
starfusion
RPRD1A--MOCOS
starfusion
arriba
IGL-@-ext--AC097110.1
starfusion
TTC39C--CABLES1
starfusion
arriba
ATP9A--KIF3B
starfusion
arriba
CCDC97--CCDC97
arriba
TVP23C--CDRT4
arriba
STX16--NPEPL1
arriba
PCDHA10--PCDHAC1
arriba
PCDHA10--PCDHAC2
arriba
PCDHA10--PCDHA13
arriba
TOX2--AL109930.1
arriba
TTLL9--CABLES1
arriba

  0%|          | 0/15 [00:00<?, ?it/s]
Processing TOX2--TSHZ2:   0%|          | 0/15 [00:00<?, ?it/s]
Processing TOX2--TSHZ2:   7%|▋         | 1/15 [00:00<00:01,  9.23it/s]
Processing MAP1LC3A--TTLL9:   7%|▋         | 1/15 [00:00<00:01,  9.23it/s]
Processing MAP1LC3A--TTLL9:  13%|█▎        | 2/15 [00:00<00:01,  9.46it/s]
Processing TLK2P1--AC110079.1:  13%|█▎        | 2/15 [00:00<00:01,  9.46it/s]
Processing TLK2P1--AC110079.1:  20%|██        | 3/15 [00:00<00:01,  9.54it/s]
Processing RPRD1A--MOCOS:  20%|██        | 3/15 [00:00<00:01,  9.54it/s]     
Processing RPRD1A--MOCOS:  27%|██▋       | 4/15 [00:00<00:01,  9.57it/s]
Processing IGL-@-ext--AC097110.1:  27%|██▋       | 4/15 [00:00<00:01,  9.57it/s]
Processing IGL-@-ext--AC097110.1:  33%|███▎      | 5/15 [00:00<00:01,  9.60it/s]
Processing TTC39C--CABLES1:  33%|███▎      | 5/15 [00:00<00:01,  9.60it/s]      
Processing TTC39C--CABLES1:  40%|████      | 6/15 [00:00<00:00,  9.61it/s]
Processing ATP9A--KIF3B:  40%|████      | 6/15 [00:00<00:00,  9.61it/s]   
Processing ATP9A--KIF3B:  47%|████▋     | 7/15 [00:00<00:00,  9.62it/s]
Processing CCDC97--CCDC97:  47%|████▋     | 7/15 [00:00<00:00,  9.62it/s]
Processing CCDC97--CCDC97:  53%|█████▎    | 8/15 [00:00<00:00,  9.62it/s]
Processing TVP23C--CDRT4:  53%|█████▎    | 8/15 [00:00<00:00,  9.62it/s] 
Processing TVP23C--CDRT4:  60%|██████    | 9/15 [00:00<00:00,  9.63it/s]
Processing STX16--NPEPL1:  60%|██████    | 9/15 [00:00<00:00,  9.63it/s]
Processing STX16--NPEPL1:  67%|██████▋   | 10/15 [00:01<00:00,  9.63it/s]
Processing PCDHA10--PCDHAC1:  67%|██████▋   | 10/15 [00:01<00:00,  9.63it/s]
Processing PCDHA10--PCDHAC1:  73%|███████▎  | 11/15 [00:01<00:00,  9.63it/s]
Processing PCDHA10--PCDHAC2:  73%|███████▎  | 11/15 [00:01<00:00,  9.63it/s]
Processing PCDHA10--PCDHAC2:  80%|████████  | 12/15 [00:01<00:00,  9.63it/s]
Processing PCDHA10--PCDHA13:  80%|████████  | 12/15 [00:01<00:00,  9.63it/s]
Processing PCDHA10--PCDHA13:  87%|████████▋ | 13/15 [00:01<00:00,  9.63it/s]
Processing TOX2--AL109930.1:  87%|████████▋ | 13/15 [00:01<00:00,  9.63it/s]
Processing TOX2--AL109930.1:  93%|█████████▎| 14/15 [00:01<00:00,  9.64it/s]
Processing TTLL9--CABLES1:  93%|█████████▎| 14/15 [00:01<00:00,  9.64it/s]  
Processing TTLL9--CABLES1: 100%|██████████| 15/15 [00:01<00:00,  9.64it/s]
Processing TTLL9--CABLES1: 100%|██████████| 15/15 [00:01<00:00,  9.61it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory