File Info
- Filename
- aih-tih-sc-f8efb2-R1_A23YTGFLT4_1.fusions.csv
- Full Path
- s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/1ae4e290e45176459d3e26932039bc/aih-tih-sc-f8efb2-R1_A23YTGFLT4_1.fusions.csv
- Size
- 4.0 KB
- Task
- NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-f8efb2-R1_A23YTGFLT4_1)
- Attempt
Content
View in new tab| Fusion | Databases | Score | Explained score | arriba | starfusion |
| TOX2--TSHZ2 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr20:43973432#chr20:53487144,reading-frame: out-of-frame,type: deletion,split_reads1: 16,split_reads2: 13,discordant_mates: 0,coverage1: 1516,coverage2: 111,confidence: high | position: chr20:43973432:+#chr20:53487144:+,junction_reads: 29,spanning_reads: 0,ffmp: 0.0978 | |
| MAP1LC3A--TTLL9 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr20:34560287#chr20:31898473,reading-frame: .,type: duplication,split_reads1: 6,split_reads2: 7,discordant_mates: 0,coverage1: 43,coverage2: 218,confidence: high | position: chr20:34560287:+#chr20:31898473:+,junction_reads: 15,spanning_reads: 0,ffmp: 0.0506 | |
| TLK2P1--AC110079.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:34039043:-#chr4:118595912:+,junction_reads: 11,spanning_reads: 0,ffmp: 0.0286 | ||
| RPRD1A--MOCOS | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr18:36067254#chr18:36248922,reading-frame: in-frame,type: inversion,split_reads1: 8,split_reads2: 3,discordant_mates: 0,coverage1: 1510,coverage2: 295,confidence: high | position: chr18:36067254:-#chr18:36248922:+,junction_reads: 11,spanning_reads: 0,ffmp: 0.0371 | |
| IGL-@-ext--AC097110.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr22:22904993:-#chr4:65859708:+,junction_reads: 9,spanning_reads: 0,ffmp: 0.0304 | ||
| TTC39C--CABLES1 | Mitelman,FusionGDB2 | 0.375 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.000) | position: chr18:24015038#chr18:23234608,reading-frame: in-frame,type: duplication,split_reads1: 5,split_reads2: 3,discordant_mates: 0,coverage1: 554,coverage2: 468,confidence: high | position: chr18:24015038:+#chr18:23234608:+,junction_reads: 8,spanning_reads: 0,ffmp: 0.027 |
| ATP9A--KIF3B | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr20:51604817#chr20:32309713,reading-frame: out-of-frame,type: inversion,split_reads1: 5,split_reads2: 3,discordant_mates: 0,coverage1: 957,coverage2: 251,confidence: high | position: chr20:51604817:-#chr20:32309713:+,junction_reads: 8,spanning_reads: 0,ffmp: 0.027 | |
| CCDC97--CCDC97 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr19:41316839#chr19:41316384,reading-frame: in-frame,type: duplication/non-canonical_splicing,split_reads1: 33,split_reads2: 36,discordant_mates: 0,coverage1: 1348,coverage2: 1712,confidence: high | ||
| TVP23C--CDRT4 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr17:15503098#chr17:15440285,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 32,split_reads2: 30,discordant_mates: 0,coverage1: 818,coverage2: 314,confidence: high | |
| STX16--NPEPL1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr20:58673711#chr20:58691724,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 34,split_reads2: 20,discordant_mates: 1,coverage1: 1449,coverage2: 329,confidence: high | ||
| PCDHA10--PCDHAC1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140858436#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 13,split_reads2: 19,discordant_mates: 0,coverage1: 854,coverage2: 1723,confidence: high | ||
| PCDHA10--PCDHAC2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140858436#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 13,split_reads2: 19,discordant_mates: 0,coverage1: 854,coverage2: 1723,confidence: high | ||
| PCDHA10--PCDHA13 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140858436#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 13,split_reads2: 19,discordant_mates: 0,coverage1: 854,coverage2: 1723,confidence: high | ||
| TOX2--AL109930.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr20:43973432#chr20:53487144,reading-frame: out-of-frame,type: deletion/5'-5',split_reads1: 16,split_reads2: 11,discordant_mates: 0,coverage1: 1516,coverage2: 111,confidence: high | ||
| TTLL9--CABLES1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr20:31898565#chr18:23258872,reading-frame: out-of-frame,type: translocation/5'-5',split_reads1: 11,split_reads2: 6,discordant_mates: 0,coverage1: 185,coverage2: 17,confidence: high |
16 rows