File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/07/265eae6c9b73bd4eaaa4f132bba2fd/.command.log
Size
9.7 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-6c4b48-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/65e6811a11d7dc8218708b3a51385d/aih-tih-sc-6c4b48-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b3/c005ce31c86e6e4acc86616d41eee1/aih-tih-sc-6c4b48-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/07/265eae6c9b73bd4eaaa4f132bba2fd/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/07/265eae6c9b73bd4eaaa4f132bba2fd/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
XPO1--FAM161A
starfusion
arriba
LUC7L3--SERHL
starfusion
arriba
SNX31--P3H2
starfusion
arriba
CYP20A1--NBEAL1
starfusion
arriba
RIT1--SMG5
starfusion
arriba
PRDM15--YIF1B
starfusion
arriba
TEPSIN--NPLOC4
starfusion
arriba
RCAN3--GRHL3
starfusion
arriba
LRRC1--RPL31P33
starfusion
arriba
MRPL48--PLEKHB1
starfusion
arriba
PARP8--RASGRF2
starfusion
arriba
SFI1--RNF185
starfusion
arriba
SPINT2--SIPA1L3
starfusion
CAMK1D--ZNF345
starfusion
PNPO--KPNB1
starfusion
arriba
NLRC5--NUP93
starfusion
arriba
VCL--USP54
starfusion
arriba
BCKDHA--ANKRD27
starfusion
arriba
EML1--SLC20A2
starfusion
arriba
NFRKB--ZBTB44
starfusion
arriba
TLK2--AC240565.1
starfusion
TLK2P1--AC110079.1
starfusion
AC060780.1--ANKS1A
starfusion
AC004980.3--UPK3BL1
starfusion
TPTE2P4--AC013734.1
starfusion
ARG2--MPP5
starfusion
arriba
TBC1D19--RBPJ
starfusion
UBE2Q2P1--GOLGA6L10
starfusion
STX16--NPEPL1
starfusion
arriba
MAPRE1--ASXL1
starfusion
SNX29P1--AC009060.2
starfusion
PCDHA6--PCDHA13
arriba
PCDHA6--PCDHAC2
arriba
PCDHA6--PCDHAC1
arriba
SORBS2--ZAR1
arriba
RBM14--RBM4
arriba
TVP23C--CDRT4
arriba
HAVCR2--HAVCR2
arriba
SLC10A4--SORBS2
arriba
ITCH--AL031668.2
arriba
ITCH--ASIP
arriba
NCOR1--FTLP12
arriba
METTL17--PRR14L
arriba
TLK2--FAM157A
arriba

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Processing XPO1--FAM161A:   0%|          | 0/44 [00:00<?, ?it/s]
Processing XPO1--FAM161A:   2%|▏         | 1/44 [00:00<00:04,  9.26it/s]
Processing LUC7L3--SERHL:   2%|▏         | 1/44 [00:00<00:04,  9.26it/s]
Processing LUC7L3--SERHL:   5%|▍         | 2/44 [00:00<00:04,  9.49it/s]
Processing SNX31--P3H2:   5%|▍         | 2/44 [00:00<00:04,  9.49it/s]  
Processing SNX31--P3H2:   7%|▋         | 3/44 [00:00<00:04,  9.56it/s]
Processing CYP20A1--NBEAL1:   7%|▋         | 3/44 [00:00<00:04,  9.56it/s]
Processing CYP20A1--NBEAL1:   9%|▉         | 4/44 [00:00<00:04,  9.59it/s]
Processing RIT1--SMG5:   9%|▉         | 4/44 [00:00<00:04,  9.59it/s]     
Processing RIT1--SMG5:  11%|█▏        | 5/44 [00:00<00:04,  9.62it/s]
Processing PRDM15--YIF1B:  11%|█▏        | 5/44 [00:00<00:04,  9.62it/s]
Processing PRDM15--YIF1B:  14%|█▎        | 6/44 [00:00<00:03,  9.63it/s]
Processing TEPSIN--NPLOC4:  14%|█▎        | 6/44 [00:00<00:03,  9.63it/s]
Processing TEPSIN--NPLOC4:  16%|█▌        | 7/44 [00:00<00:03,  9.63it/s]
Processing RCAN3--GRHL3:  16%|█▌        | 7/44 [00:00<00:03,  9.63it/s]  
Processing RCAN3--GRHL3:  18%|█▊        | 8/44 [00:00<00:03,  9.64it/s]
Processing LRRC1--RPL31P33:  18%|█▊        | 8/44 [00:00<00:03,  9.64it/s]
Processing LRRC1--RPL31P33:  20%|██        | 9/44 [00:00<00:03,  9.65it/s]
Processing MRPL48--PLEKHB1:  20%|██        | 9/44 [00:00<00:03,  9.65it/s]
Processing MRPL48--PLEKHB1:  23%|██▎       | 10/44 [00:01<00:03,  9.65it/s]
Processing PARP8--RASGRF2:  23%|██▎       | 10/44 [00:01<00:03,  9.65it/s] 
Processing PARP8--RASGRF2:  25%|██▌       | 11/44 [00:01<00:03,  9.65it/s]
Processing SFI1--RNF185:  25%|██▌       | 11/44 [00:01<00:03,  9.65it/s]  
Processing SFI1--RNF185:  27%|██▋       | 12/44 [00:01<00:03,  9.65it/s]
Processing SPINT2--SIPA1L3:  27%|██▋       | 12/44 [00:01<00:03,  9.65it/s]
Processing SPINT2--SIPA1L3:  30%|██▉       | 13/44 [00:01<00:03,  9.65it/s]
Processing CAMK1D--ZNF345:  30%|██▉       | 13/44 [00:01<00:03,  9.65it/s] 
Processing CAMK1D--ZNF345:  32%|███▏      | 14/44 [00:01<00:03,  9.65it/s]
Processing PNPO--KPNB1:  32%|███▏      | 14/44 [00:01<00:03,  9.65it/s]   
Processing PNPO--KPNB1:  34%|███▍      | 15/44 [00:01<00:03,  9.65it/s]
Processing NLRC5--NUP93:  34%|███▍      | 15/44 [00:01<00:03,  9.65it/s]
Processing NLRC5--NUP93:  36%|███▋      | 16/44 [00:01<00:02,  9.65it/s]
Processing VCL--USP54:  36%|███▋      | 16/44 [00:01<00:02,  9.65it/s]  
Processing VCL--USP54:  39%|███▊      | 17/44 [00:01<00:02,  9.65it/s]
Processing BCKDHA--ANKRD27:  39%|███▊      | 17/44 [00:01<00:02,  9.65it/s]
Processing BCKDHA--ANKRD27:  41%|████      | 18/44 [00:01<00:02,  9.65it/s]
Processing EML1--SLC20A2:  41%|████      | 18/44 [00:01<00:02,  9.65it/s]  
Processing EML1--SLC20A2:  43%|████▎     | 19/44 [00:01<00:02,  9.65it/s]
Processing NFRKB--ZBTB44:  43%|████▎     | 19/44 [00:01<00:02,  9.65it/s]
Processing NFRKB--ZBTB44:  45%|████▌     | 20/44 [00:02<00:02,  9.65it/s]
Processing TLK2--AC240565.1:  45%|████▌     | 20/44 [00:02<00:02,  9.65it/s]
Processing TLK2--AC240565.1:  48%|████▊     | 21/44 [00:02<00:02,  9.65it/s]
Processing TLK2P1--AC110079.1:  48%|████▊     | 21/44 [00:02<00:02,  9.65it/s]
Processing TLK2P1--AC110079.1:  50%|█████     | 22/44 [00:02<00:02,  9.65it/s]
Processing AC060780.1--ANKS1A:  50%|█████     | 22/44 [00:02<00:02,  9.65it/s]
Processing AC060780.1--ANKS1A:  52%|█████▏    | 23/44 [00:02<00:02,  9.66it/s]
Processing AC004980.3--UPK3BL1:  52%|█████▏    | 23/44 [00:02<00:02,  9.66it/s]
Processing AC004980.3--UPK3BL1:  55%|█████▍    | 24/44 [00:02<00:02,  9.66it/s]
Processing TPTE2P4--AC013734.1:  55%|█████▍    | 24/44 [00:02<00:02,  9.66it/s]
Processing TPTE2P4--AC013734.1:  57%|█████▋    | 25/44 [00:02<00:01,  9.65it/s]
Processing ARG2--MPP5:  57%|█████▋    | 25/44 [00:02<00:01,  9.65it/s]         
Processing ARG2--MPP5:  59%|█████▉    | 26/44 [00:02<00:01,  9.65it/s]
Processing TBC1D19--RBPJ:  59%|█████▉    | 26/44 [00:02<00:01,  9.65it/s]
Processing TBC1D19--RBPJ:  61%|██████▏   | 27/44 [00:02<00:01,  9.65it/s]
Processing UBE2Q2P1--GOLGA6L10:  61%|██████▏   | 27/44 [00:02<00:01,  9.65it/s]
Processing UBE2Q2P1--GOLGA6L10:  64%|██████▎   | 28/44 [00:02<00:01,  9.66it/s]
Processing STX16--NPEPL1:  64%|██████▎   | 28/44 [00:02<00:01,  9.66it/s]      
Processing STX16--NPEPL1:  66%|██████▌   | 29/44 [00:03<00:01,  9.65it/s]
Processing MAPRE1--ASXL1:  66%|██████▌   | 29/44 [00:03<00:01,  9.65it/s]
Processing MAPRE1--ASXL1:  68%|██████▊   | 30/44 [00:03<00:01,  9.65it/s]
Processing SNX29P1--AC009060.2:  68%|██████▊   | 30/44 [00:03<00:01,  9.65it/s]
Processing SNX29P1--AC009060.2:  70%|███████   | 31/44 [00:03<00:01,  9.65it/s]
Processing PCDHA6--PCDHA13:  70%|███████   | 31/44 [00:03<00:01,  9.65it/s]    
Processing PCDHA6--PCDHA13:  73%|███████▎  | 32/44 [00:03<00:01,  9.65it/s]
Processing PCDHA6--PCDHAC2:  73%|███████▎  | 32/44 [00:03<00:01,  9.65it/s]
Processing PCDHA6--PCDHAC2:  75%|███████▌  | 33/44 [00:03<00:01,  9.65it/s]
Processing PCDHA6--PCDHAC1:  75%|███████▌  | 33/44 [00:03<00:01,  9.65it/s]
Processing PCDHA6--PCDHAC1:  77%|███████▋  | 34/44 [00:03<00:01,  9.65it/s]
Processing SORBS2--ZAR1:  77%|███████▋  | 34/44 [00:03<00:01,  9.65it/s]   
Processing SORBS2--ZAR1:  80%|███████▉  | 35/44 [00:03<00:00,  9.66it/s]
Processing RBM14--RBM4:  80%|███████▉  | 35/44 [00:03<00:00,  9.66it/s] 
Processing RBM14--RBM4:  82%|████████▏ | 36/44 [00:03<00:00,  9.66it/s]
Processing TVP23C--CDRT4:  82%|████████▏ | 36/44 [00:03<00:00,  9.66it/s]
Processing TVP23C--CDRT4:  84%|████████▍ | 37/44 [00:03<00:00,  9.66it/s]
Processing HAVCR2--HAVCR2:  84%|████████▍ | 37/44 [00:03<00:00,  9.66it/s]
Processing HAVCR2--HAVCR2:  86%|████████▋ | 38/44 [00:03<00:00,  9.66it/s]
Processing SLC10A4--SORBS2:  86%|████████▋ | 38/44 [00:03<00:00,  9.66it/s]
Processing SLC10A4--SORBS2:  89%|████████▊ | 39/44 [00:04<00:00,  9.66it/s]
Processing ITCH--AL031668.2:  89%|████████▊ | 39/44 [00:04<00:00,  9.66it/s]
Processing ITCH--AL031668.2:  91%|█████████ | 40/44 [00:04<00:00,  9.66it/s]
Processing ITCH--ASIP:  91%|█████████ | 40/44 [00:04<00:00,  9.66it/s]      
Processing ITCH--ASIP:  93%|█████████▎| 41/44 [00:04<00:00,  9.66it/s]
Processing NCOR1--FTLP12:  93%|█████████▎| 41/44 [00:04<00:00,  9.66it/s]
Processing NCOR1--FTLP12:  95%|█████████▌| 42/44 [00:04<00:00,  9.65it/s]
Processing METTL17--PRR14L:  95%|█████████▌| 42/44 [00:04<00:00,  9.65it/s]
Processing METTL17--PRR14L:  98%|█████████▊| 43/44 [00:04<00:00,  9.65it/s]
Processing TLK2--FAM157A:  98%|█████████▊| 43/44 [00:04<00:00,  9.65it/s]  
Processing TLK2--FAM157A: 100%|██████████| 44/44 [00:04<00:00,  9.66it/s]
Processing TLK2--FAM157A: 100%|██████████| 44/44 [00:04<00:00,  9.64it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory