Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2d/018801bc37aaadadacc4440b972cb0/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2d/018801bc37aaadadacc4440b972cb0/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/b428ddd3d0a7a602c78e3bd8c7f3a1/aih-tih-sc-f26674-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/bc79a20701125d42802414c5440e13/aih-tih-sc-f26674-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory