File Info

Filename
aih-tih-sc-4bcd26-R1_A23YTGFLT4_1.Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/24/e5c45b60f3f05d68ae910d55b9f53f/aih-tih-sc-4bcd26-R1_A23YTGFLT4_1.Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 07:33:25
                             Started mapping on |	Jun 08 07:35:52
                                    Finished on |	Jun 08 08:15:25
       Mapping speed, Million of reads per hour |	294.63

                          Number of input reads |	194210175
                      Average input read length |	233
                                    UNIQUE READS:
                   Uniquely mapped reads number |	185761259
                        Uniquely mapped reads % |	95.65%
                          Average mapped length |	233.02
                       Number of splices: Total |	169184868
            Number of splices: Annotated (sjdb) |	167206579
                       Number of splices: GT/AG |	167518360
                       Number of splices: GC/AG |	1187796
                       Number of splices: AT/AC |	128308
               Number of splices: Non-canonical |	350404
                      Mismatch rate per base, % |	0.27%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.02
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.50
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	5001710
             % of reads mapped to multiple loci |	2.58%
        Number of reads mapped to too many loci |	178383
             % of reads mapped to too many loci |	0.09%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	318001
       % of reads unmapped: too many mismatches |	0.16%
            Number of reads unmapped: too short |	1405599
                 % of reads unmapped: too short |	0.72%
                Number of reads unmapped: other |	133414
                     % of reads unmapped: other |	0.07%
                                  CHIMERIC READS:
                       Number of chimeric reads |	2414024
                            % of chimeric reads |	1.24%