File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c9/82a89a22287c8a3843563408a3fb23/.command.log
Size
8.8 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-1274d4-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c9/82a89a22287c8a3843563408a3fb23/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/8f54cd347ff3b7d2774f2fe31dc8a6/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c9/82a89a22287c8a3843563408a3fb23/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c2/0990723e2f1a25f281f85daf43bcaa/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
CLTC--EDEM2
starfusion
RPS6KB1--VMP1
starfusion
arriba
PARP6--NRG4
starfusion
arriba
TMX2--MS4A6E
starfusion
arriba
PACSIN2--SLCO2B1
starfusion
arriba
PARD6B--NR1D1
starfusion
arriba
MAP2K1--PGPEP1L
starfusion
arriba
TLK2P1--AC110079.1
starfusion
SYNGR1--TTLL1
starfusion
arriba
FER1L4--PIGU
starfusion
arriba
TLK2--AC240565.1
starfusion
INTS1--JAZF1
starfusion
arriba
FSIP1--AC013652.1
starfusion
TTC6--MIPOL1
starfusion
arriba
STX16--NPEPL1
starfusion
arriba
PLEKHM1P1--KCNQ2
starfusion
FBXO25--AC240565.1
starfusion
ARID4B--OR2L3
starfusion
arriba
RNF213--SRCIN1
arriba
HDGFL3--ARNT2
arriba
TFB2M--CNST
arriba
RPS6KB1--NKILA
arriba
RPS6KB1--AL162291.1
arriba
ITCH--RALGAPB
arriba
CLPX--PDCD7
arriba
TVP23C--CDRT4
arriba
RPS6KB1--AL118523.1
arriba
RPS6KB1--HSPE1P1
arriba
SMURF2--CSH1
arriba
RPN2--CNBD2
arriba
AC092807.3--DDAH1
arriba
CEP131--TSHZ2
arriba
RPN2--NORAD
arriba
TTLL12--SLCO2B1
arriba
PCDHA11--PCDHAC2
arriba
PCDHA11--PCDHAC1
arriba
PCDHA11--PCDHA13
arriba
BMP7--DHX35
arriba
BMP7--LINC01734
arriba
RBM34--OR2L3
arriba

  0%|          | 0/40 [00:00<?, ?it/s]
Processing CLTC--EDEM2:   0%|          | 0/40 [00:00<?, ?it/s]
Processing CLTC--EDEM2:   2%|▎         | 1/40 [00:00<00:04,  8.67it/s]
Processing RPS6KB1--VMP1:   2%|▎         | 1/40 [00:00<00:04,  8.67it/s]
Processing RPS6KB1--VMP1:   5%|▌         | 2/40 [00:00<00:04,  9.06it/s]
Processing PARP6--NRG4:   5%|▌         | 2/40 [00:00<00:04,  9.06it/s]  
Processing PARP6--NRG4:   8%|▊         | 3/40 [00:00<00:04,  9.21it/s]
Processing TMX2--MS4A6E:   8%|▊         | 3/40 [00:00<00:04,  9.21it/s]
Processing TMX2--MS4A6E:  10%|█         | 4/40 [00:00<00:03,  9.30it/s]
Processing PACSIN2--SLCO2B1:  10%|█         | 4/40 [00:00<00:03,  9.30it/s]
Processing PACSIN2--SLCO2B1:  12%|█▎        | 5/40 [00:00<00:03,  9.34it/s]
Processing PARD6B--NR1D1:  12%|█▎        | 5/40 [00:00<00:03,  9.34it/s]   
Processing PARD6B--NR1D1:  15%|█▌        | 6/40 [00:00<00:03,  9.37it/s]
Processing MAP2K1--PGPEP1L:  15%|█▌        | 6/40 [00:00<00:03,  9.37it/s]
Processing MAP2K1--PGPEP1L:  18%|█▊        | 7/40 [00:00<00:03,  9.37it/s]
Processing TLK2P1--AC110079.1:  18%|█▊        | 7/40 [00:00<00:03,  9.37it/s]
Processing TLK2P1--AC110079.1:  20%|██        | 8/40 [00:00<00:03,  9.37it/s]
Processing SYNGR1--TTLL1:  20%|██        | 8/40 [00:00<00:03,  9.37it/s]     
Processing SYNGR1--TTLL1:  22%|██▎       | 9/40 [00:00<00:03,  9.38it/s]
Processing FER1L4--PIGU:  22%|██▎       | 9/40 [00:00<00:03,  9.38it/s] 
Processing FER1L4--PIGU:  25%|██▌       | 10/40 [00:01<00:03,  9.38it/s]
Processing TLK2--AC240565.1:  25%|██▌       | 10/40 [00:01<00:03,  9.38it/s]
Processing TLK2--AC240565.1:  28%|██▊       | 11/40 [00:01<00:03,  9.38it/s]
Processing INTS1--JAZF1:  28%|██▊       | 11/40 [00:01<00:03,  9.38it/s]    
Processing INTS1--JAZF1:  30%|███       | 12/40 [00:01<00:02,  9.38it/s]
Processing FSIP1--AC013652.1:  30%|███       | 12/40 [00:01<00:02,  9.38it/s]
Processing FSIP1--AC013652.1:  32%|███▎      | 13/40 [00:01<00:02,  9.38it/s]
Processing TTC6--MIPOL1:  32%|███▎      | 13/40 [00:01<00:02,  9.38it/s]     
Processing TTC6--MIPOL1:  35%|███▌      | 14/40 [00:01<00:02,  9.38it/s]
Processing STX16--NPEPL1:  35%|███▌      | 14/40 [00:01<00:02,  9.38it/s]
Processing STX16--NPEPL1:  38%|███▊      | 15/40 [00:01<00:02,  9.39it/s]
Processing PLEKHM1P1--KCNQ2:  38%|███▊      | 15/40 [00:01<00:02,  9.39it/s]
Processing PLEKHM1P1--KCNQ2:  40%|████      | 16/40 [00:01<00:02,  9.39it/s]
Processing FBXO25--AC240565.1:  40%|████      | 16/40 [00:01<00:02,  9.39it/s]
Processing FBXO25--AC240565.1:  42%|████▎     | 17/40 [00:01<00:02,  9.39it/s]
Processing ARID4B--OR2L3:  42%|████▎     | 17/40 [00:01<00:02,  9.39it/s]     
Processing ARID4B--OR2L3:  45%|████▌     | 18/40 [00:01<00:02,  9.39it/s]
Processing RNF213--SRCIN1:  45%|████▌     | 18/40 [00:01<00:02,  9.39it/s]
Processing RNF213--SRCIN1:  48%|████▊     | 19/40 [00:02<00:02,  9.39it/s]
Processing HDGFL3--ARNT2:  48%|████▊     | 19/40 [00:02<00:02,  9.39it/s] 
Processing HDGFL3--ARNT2:  50%|█████     | 20/40 [00:02<00:02,  9.39it/s]
Processing TFB2M--CNST:  50%|█████     | 20/40 [00:02<00:02,  9.39it/s]  
Processing TFB2M--CNST:  52%|█████▎    | 21/40 [00:02<00:02,  9.39it/s]
Processing RPS6KB1--NKILA:  52%|█████▎    | 21/40 [00:02<00:02,  9.39it/s]
Processing RPS6KB1--NKILA:  55%|█████▌    | 22/40 [00:02<00:01,  9.39it/s]
Processing RPS6KB1--AL162291.1:  55%|█████▌    | 22/40 [00:02<00:01,  9.39it/s]
Processing RPS6KB1--AL162291.1:  57%|█████▊    | 23/40 [00:02<00:01,  9.40it/s]
Processing ITCH--RALGAPB:  57%|█████▊    | 23/40 [00:02<00:01,  9.40it/s]      
Processing ITCH--RALGAPB:  60%|██████    | 24/40 [00:02<00:01,  9.41it/s]
Processing CLPX--PDCD7:  60%|██████    | 24/40 [00:02<00:01,  9.41it/s]  
Processing CLPX--PDCD7:  62%|██████▎   | 25/40 [00:02<00:01,  9.41it/s]
Processing TVP23C--CDRT4:  62%|██████▎   | 25/40 [00:02<00:01,  9.41it/s]
Processing TVP23C--CDRT4:  65%|██████▌   | 26/40 [00:02<00:01,  9.41it/s]
Processing RPS6KB1--AL118523.1:  65%|██████▌   | 26/40 [00:02<00:01,  9.41it/s]
Processing RPS6KB1--AL118523.1:  68%|██████▊   | 27/40 [00:02<00:01,  9.41it/s]
Processing RPS6KB1--HSPE1P1:  68%|██████▊   | 27/40 [00:02<00:01,  9.41it/s]   
Processing RPS6KB1--HSPE1P1:  70%|███████   | 28/40 [00:02<00:01,  9.42it/s]
Processing SMURF2--CSH1:  70%|███████   | 28/40 [00:02<00:01,  9.42it/s]    
Processing SMURF2--CSH1:  72%|███████▎  | 29/40 [00:03<00:01,  9.36it/s]
Processing RPN2--CNBD2:  72%|███████▎  | 29/40 [00:03<00:01,  9.36it/s] 
Processing RPN2--CNBD2:  75%|███████▌  | 30/40 [00:03<00:01,  9.36it/s]
Processing AC092807.3--DDAH1:  75%|███████▌  | 30/40 [00:03<00:01,  9.36it/s]
Processing AC092807.3--DDAH1:  78%|███████▊  | 31/40 [00:03<00:00,  9.37it/s]
Processing CEP131--TSHZ2:  78%|███████▊  | 31/40 [00:03<00:00,  9.37it/s]    
Processing CEP131--TSHZ2:  80%|████████  | 32/40 [00:03<00:00,  9.37it/s]
Processing RPN2--NORAD:  80%|████████  | 32/40 [00:03<00:00,  9.37it/s]  
Processing RPN2--NORAD:  82%|████████▎ | 33/40 [00:03<00:00,  9.38it/s]
Processing TTLL12--SLCO2B1:  82%|████████▎ | 33/40 [00:03<00:00,  9.38it/s]
Processing TTLL12--SLCO2B1:  85%|████████▌ | 34/40 [00:03<00:00,  9.38it/s]
Processing PCDHA11--PCDHAC2:  85%|████████▌ | 34/40 [00:03<00:00,  9.38it/s]
Processing PCDHA11--PCDHAC2:  88%|████████▊ | 35/40 [00:03<00:00,  9.39it/s]
Processing PCDHA11--PCDHAC1:  88%|████████▊ | 35/40 [00:03<00:00,  9.39it/s]
Processing PCDHA11--PCDHAC1:  90%|█████████ | 36/40 [00:03<00:00,  9.39it/s]
Processing PCDHA11--PCDHA13:  90%|█████████ | 36/40 [00:03<00:00,  9.39it/s]
Processing PCDHA11--PCDHA13:  92%|█████████▎| 37/40 [00:03<00:00,  9.39it/s]
Processing BMP7--DHX35:  92%|█████████▎| 37/40 [00:03<00:00,  9.39it/s]     
Processing BMP7--DHX35:  95%|█████████▌| 38/40 [00:04<00:00,  9.40it/s]
Processing BMP7--LINC01734:  95%|█████████▌| 38/40 [00:04<00:00,  9.40it/s]
Processing BMP7--LINC01734:  98%|█████████▊| 39/40 [00:04<00:00,  9.40it/s]
Processing RBM34--OR2L3:  98%|█████████▊| 39/40 [00:04<00:00,  9.40it/s]   
Processing RBM34--OR2L3: 100%|██████████| 40/40 [00:04<00:00,  9.40it/s]
Processing RBM34--OR2L3: 100%|██████████| 40/40 [00:04<00:00,  9.37it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory