File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/96/08f9108ec704f76025bcbedc9fb117/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 08:55:26
                             Started mapping on |	Jun 08 09:01:49
                                    Finished on |	Jun 08 09:32:53
       Mapping speed, Million of reads per hour |	325.38

                          Number of input reads |	168472012
                      Average input read length |	217
                                    UNIQUE READS:
                   Uniquely mapped reads number |	160992242
                        Uniquely mapped reads % |	95.56%
                          Average mapped length |	216.78
                       Number of splices: Total |	129191834
            Number of splices: Annotated (sjdb) |	127099276
                       Number of splices: GT/AG |	127424087
                       Number of splices: GC/AG |	896706
                       Number of splices: AT/AC |	98210
               Number of splices: Non-canonical |	772831
                      Mismatch rate per base, % |	0.52%
                         Deletion rate per base |	0.03%
                        Deletion average length |	2.14
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.57
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	5546068
             % of reads mapped to multiple loci |	3.29%
        Number of reads mapped to too many loci |	535004
             % of reads mapped to too many loci |	0.32%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	1190821
                 % of reads unmapped: too short |	0.71%
                Number of reads unmapped: other |	207877
                     % of reads unmapped: other |	0.12%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%