Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/0a3f9259913c858f73c5f0f697a9fb/aih-tih-sc-242a7d-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/17daecd8625d58e05f3cd0a3291b1e/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/17daecd8625d58e05f3cd0a3291b1e/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 250065594
unpaired = 3707845
MERGED PAIRED END READS = 250065594
MATES PROCESSED = 503839033
TOTAL READS     = 253773439
DISTINCT READS  = 3.91857e+07
DISTINCT COUNTS = 2091
MAX COUNT       = 517169
COUNTS OF 1     = 9.71531e+06
MAX TERMS       = 100
OBSERVED COUNTS (517170)
1	9715307
2	4641243
3	3704124
4	3226138
5	2806162
6	2410921
7	2053156
8	1731197
9	1445997
10	1203540
11	996413
12	819875
13	673908
14	555621
15	457271
16	376791
17	311177
18	258992
19	217334
20	181619
21	153193
22	129829
23	110648
24	95219
25	82442
26	71727
27	62429
28	54944
29	48268
30	42801
31	38378
32	34297
33	30850
34	27827
35	25112
36	22686
37	20796
38	18900
39	16807
40	15807
41	14246
42	13099
43	12267
44	11200
45	10173
46	9579
47	8895
48	8276
49	7642
50	7102
51	6632
52	6126
53	5588
54	5549
55	5005
56	4649
57	4555
58	4331
59	3994
60	3736
61	3718
62	3505
63	3280
64	3104
65	3000
66	2864
67	2761
68	2646
69	2536
70	2408
71	2371
72	2267
73	2147
74	2111
75	1992
76	2007
77	1905
78	1778
79	1735
80	1759
81	1607
82	1573
83	1555
84	1522
85	1424
86	1352
87	1330
88	1322
89	1262
90	1236
91	1227
92	1194
93	1144
94	1172
95	1111
96	1064
97	1041
98	1051
99	1000
100	968
101	958
102	896
103	972
104	908
105	821
106	850
107	827
108	769
109	783
110	767
111	749
112	748
113	722
114	712
115	706
116	657
117	604
118	641
119	652
120	602
121	575
122	594
123	606
124	555
125	577
126	555
127	536
128	584
129	481
130	482
131	524
132	505
133	492
134	445
135	485
136	449
137	455
138	470
139	415
140	461
141	435
142	413
143	418
144	435
145	396
146	367
147	422
148	400
149	366
150	392
151	350
152	322
153	344
154	364
155	365
156	348
157	374
158	308
159	316
160	326
161	296
162	297
163	318
164	271
165	313
166	307
167	292
168	262
169	261
170	270
171	273
172	264
173	233
174	244
175	234
176	275
177	234
178	238
179	240
180	229
181	227
182	224
183	206
184	211
185	244
186	235
187	179
188	214
189	234
190	224
191	214
192	252
193	200
194	210
195	191
196	184
197	207
198	198
199	174
200	185
201	158
202	170
203	174
204	178
205	180
206	189
207	184
208	175
209	137
210	164
211	147
212	142
213	167
214	175
215	145
216	173
217	155
218	166
219	133
220	172
221	131
222	151
223	143
224	126
225	157
226	138
227	153
228	130
229	128
230	130
231	100
232	136
233	156
234	124
235	142
236	125
237	128
238	130
239	132
240	120
241	125
242	100
243	120
244	118
245	122
246	119
247	106
248	116
249	108
250	110
251	106
252	118
253	100
254	101
255	110
256	93
257	119
258	101
259	92
260	109
261	78
262	101
263	87
264	101
265	100
266	91
267	82
268	98
269	88
270	90
271	68
272	89
273	94
274	70
275	84
276	81
277	100
278	99
279	72
280	81
281	75
282	75
283	98
284	85
285	95
286	65
287	83
288	73
289	76
290	97
291	67
292	89
293	78
294	59
295	70
296	63
297	74
298	80
299	68
300	65
301	73
302	80
303	73
304	57
305	66
306	64
307	63
308	75
309	64
310	78
311	67
312	64
313	67
314	57
315	63
316	60
317	67
318	59
319	57
320	67
321	62
322	48
323	63
324	64
325	67
326	68
327	44
328	63
329	54
330	64
331	61
332	62
333	58
334	53
335	61
336	67
337	62
338	45
339	48
340	44
341	60
342	65
343	46
344	57
345	51
346	53
347	47
348	57
349	46
350	54
351	54
352	50
353	46
354	41
355	47
356	38
357	51
358	49
359	43
360	56
361	52
362	36
363	54
364	49
365	43
366	41
367	46
368	49
369	52
370	43
371	34
372	40
373	34
374	40
375	36
376	46
377	38
378	36
379	48
380	41
381	44
382	33
383	39
384	47
385	35
386	36
387	39
388	46
389	40
390	48
391	40
392	29
393	39
394	39
395	45
396	38
397	34
398	40
399	35
400	35
401	38
402	40
403	32
404	39
405	36
406	33
407	33
408	22
409	45
410	40
411	30
412	37
413	39
414	39
415	33
416	29
417	22
418	30
419	25
420	35
421	24
422	28
423	33
424	28
425	37
426	41
427	27
428	32
429	29
430	33
431	20
432	30
433	35
434	22
435	31
436	27
437	29
438	24
439	26
440	25
441	40
442	32
443	23
444	30
445	29
446	31
447	26
448	36
449	24
450	25
451	23
452	21
453	38
454	20
455	21
456	36
457	21
458	27
459	36
460	24
461	19
462	22
463	28
464	24
465	39
466	20
467	22
468	32
469	22
470	27
471	26
472	26
473	22
474	24
475	22
476	24
477	20
478	30
479	24
480	28
481	22
482	18
483	28
484	27
485	31
486	28
487	16
488	26
489	25
490	28
491	28
492	15
493	24
494	18
495	29
496	25
497	23
498	15
499	14
500	14
501	20
502	25
503	21
504	18
505	25
506	22
507	19
508	11
509	14
510	17
511	29
512	15
513	20
514	22
515	22
516	18
517	17
518	20
519	16
520	22
521	19
522	16
523	12
524	17
525	20
526	14
527	22
528	14
529	21
530	18
531	13
532	15
533	19
534	12
535	19
536	17
537	18
538	21
539	21
540	26
541	15
542	15
543	16
544	21
545	16
546	12
547	21
548	20
549	17
550	18
551	15
552	15
553	14
554	15
555	15
556	17
557	20
558	14
559	16
560	20
561	16
562	15
563	18
564	22
565	15
566	16
567	28
568	13
569	9
570	23
571	14
572	21
573	9
574	13
575	20
576	14
577	8
578	17
579	24
580	20
581	11
582	13
583	19
584	13
585	15
586	16
587	11
588	12
589	12
590	11
591	18
592	14
593	19
594	20
595	9
596	17
597	16
598	13
599	13
600	12
601	16
602	11
603	6
604	13
605	14
606	12
607	14
608	15
609	10
610	17
611	12
612	15
613	11
614	13
615	9
616	11
617	15
618	13
619	18
620	12
621	12
622	10
623	15
624	6
625	10
626	11
627	12
628	8
629	12
630	5
631	13
632	8
633	14
634	11
635	19
636	4
637	13
638	12
639	10
640	11
641	14
642	10
643	14
644	11
645	11
646	20
647	9
648	9
649	16
650	8
651	13
652	17
653	15
654	11
655	9
656	12
657	13
658	9
659	6
660	9
661	7
662	8
663	14
664	9
665	10
666	5
667	7
668	14
669	8
670	10
671	11
672	11
673	10
674	8
675	7
676	7
677	10
678	7
679	15
680	11
681	6
682	9
683	7
684	12
685	12
686	5
687	7
688	11
689	11
690	8
691	11
692	10
693	6
694	8
695	10
696	11
697	8
698	5
699	15
700	9
701	7
702	7
703	9
704	10
705	9
706	7
707	6
708	9
709	10
710	4
711	7
712	8
713	12
714	6
715	17
716	9
717	5
718	14
719	11
720	11
721	3
722	11
723	5
724	8
725	12
726	7
727	10
728	7
729	9
730	7
731	9
732	7
733	10
734	14
735	9
736	9
737	8
738	7
739	7
740	8
741	9
742	9
743	8
744	10
745	8
746	7
747	6
748	10
749	8
750	5
751	7
752	7
753	9
754	8
755	6
756	4
757	12
758	13
759	7
760	3
761	5
762	4
763	3
764	5
765	9
766	5
767	7
768	9
769	5
770	5
771	8
772	6
773	5
774	4
775	6
776	4
777	2
778	8
779	5
780	3
781	6
782	9
783	5
784	4
785	6
786	4
787	4
788	3
789	7
790	9
791	8
792	11
793	3
794	7
795	6
796	10
797	5
798	5
799	8
800	4
801	4
802	2
803	8
804	4
805	7
806	6
807	6
808	4
809	5
810	5
811	5
812	8
813	6
814	6
815	2
816	3
817	1
818	7
819	10
820	5
821	9
822	2
823	4
824	1
825	7
826	7
827	5
828	3
829	7
830	11
831	5
832	8
833	5
834	7
835	1
836	5
837	2
838	7
839	5
840	4
841	6
842	5
843	6
844	5
845	3
846	4
847	3
848	7
849	7
850	3
851	11
852	7
853	11
854	9
855	12
856	6
857	2
858	8
859	5
860	6
861	6
862	4
863	2
864	2
865	4
866	5
867	7
868	4
869	2
870	5
871	7
872	2
873	2
874	7
875	6
876	4
877	2
878	5
879	6
880	4
881	3
882	9
883	2
884	2
885	6
886	4
887	4
888	3
889	5
890	4
891	3
892	3
893	3
894	1
895	7
896	2
897	1
898	4
899	4
900	6
901	7
902	5
903	7
904	7
905	4
906	4
907	5
908	4
909	4
910	6
911	7
912	6
913	3
914	5
915	2
916	7
917	4
918	4
919	7
920	2
921	4
922	4
923	3
924	4
925	3
926	4
927	4
928	5
929	8
930	6
931	5
932	8
933	6
934	5
935	2
936	2
937	4
939	5
940	4
941	3
942	4
943	2
944	6
945	8
946	3
947	6
948	1
949	6
950	2
951	3
952	2
953	8
954	1
955	2
956	3
957	1
958	2
959	1
960	3
961	7
963	2
964	6
966	5
967	1
968	1
969	5
970	4
971	2
972	5
973	4
974	5
975	4
976	3
977	4
978	2
979	4
980	9
981	5
982	6
983	5
984	3
985	1
986	6
987	5
988	2
989	7
990	3
991	2
992	2
993	3
994	1
996	7
997	2
998	3
999	4
1000	4
1001	3
1002	3
1003	3
1004	2
1005	3
1006	6
1007	3
1009	2
1010	2
1011	1
1012	3
1013	1
1014	8
1015	2
1016	2
1017	3
1018	4
1019	2
1020	2
1021	6
1022	6
1023	2
1024	3
1025	5
1026	2
1027	5
1028	1
1029	3
1030	6
1031	3
1032	3
1033	4
1034	2
1035	2
1036	2
1037	3
1038	2
1039	5
1040	4
1041	2
1042	3
1043	4
1044	5
1045	4
1046	5
1047	1
1048	2
1049	5
1050	2
1051	4
1052	2
1053	5
1054	6
1055	4
1056	3
1057	1
1058	2
1059	1
1060	1
1061	3
1062	6
1063	2
1064	2
1065	6
1066	4
1067	1
1068	2
1069	3
1070	3
1071	3
1072	4
1073	5
1075	6
1076	4
1078	4
1079	1
1081	6
1082	2
1084	4
1086	1
1088	7
1089	3
1090	4
1091	3
1092	3
1093	4
1094	1
1095	4
1096	3
1097	1
1098	2
1099	5
1100	1
1101	3
1102	3
1103	4
1104	2
1105	3
1106	2
1107	4
1108	1
1109	3
1110	3
1112	1
1113	4
1114	3
1115	2
1116	2
1117	3
1118	3
1119	3
1120	2
1121	4
1122	2
1123	2
1124	2
1125	3
1126	5
1127	3
1128	1
1129	2
1130	2
1131	2
1132	2
1134	2
1137	6
1138	3
1139	2
1140	1
1141	2
1142	2
1144	1
1145	2
1146	2
1147	6
1148	4
1149	3
1150	3
1151	2
1152	2
1153	3
1154	2
1155	2
1156	1
1157	1
1158	6
1159	2
1160	6
1161	1
1163	3
1164	2
1165	3
1166	1
1167	3
1168	3
1169	4
1170	2
1171	4
1172	1
1173	3
1174	2
1175	4
1176	3
1177	2
1178	3
1179	1
1180	4
1182	2
1183	1
1184	1
1185	1
1186	1
1187	2
1188	4
1190	4
1191	2
1192	2
1193	2
1194	3
1195	2
1196	1
1197	3
1198	3
1199	3
1201	2
1203	1
1204	1
1205	1
1206	4
1207	1
1208	2
1209	4
1210	2
1211	2
1212	2
1213	2
1214	1
1215	1
1216	2
1217	2
1218	2
1219	4
1221	1
1222	1
1224	5
1226	2
1227	2
1228	2
1229	3
1230	2
1231	1
1232	2
1233	3
1234	3
1235	3
1236	4
1239	2
1240	2
1241	1
1242	4
1244	1
1245	3
1246	2
1247	1
1248	3
1249	4
1250	3
1251	2
1253	1
1254	2
1255	2
1256	1
1258	2
1259	3
1260	1
1261	4
1262	1
1263	5
1264	3
1266	2
1267	2
1268	2
1269	4
1270	2
1271	3
1272	3
1274	3
1275	4
1276	3
1277	1
1278	2
1279	2
1280	2
1281	3
1282	3
1283	1
1284	1
1285	2
1286	2
1287	1
1288	3
1289	3
1290	3
1291	2
1292	1
1293	1
1295	3
1296	2
1297	3
1298	3
1299	2
1300	1
1301	4
1302	1
1304	2
1306	2
1308	5
1310	2
1311	1
1312	3
1313	1
1314	3
1315	3
1316	5
1317	2
1318	2
1319	3
1322	4
1323	2
1324	1
1325	2
1326	4
1327	2
1328	2
1329	2
1330	3
1331	1
1333	1
1334	2
1335	1
1336	1
1337	2
1338	1
1339	3
1340	1
1342	2
1343	4
1344	1
1346	2
1347	1
1349	1
1350	2
1351	2
1353	4
1355	5
1357	2
1358	1
1359	2
1360	1
1361	1
1363	1
1364	3
1365	1
1366	1
1367	4
1368	3
1369	4
1371	1
1372	2
1373	2
1374	2
1375	2
1377	1
1378	2
1379	3
1380	2
1382	2
1383	1
1384	3
1385	2
1386	3
1388	1
1389	2
1390	2
1391	1
1392	1
1393	3
1394	1
1396	4
1397	1
1398	4
1401	2
1402	2
1403	5
1404	2
1405	2
1406	2
1408	2
1409	6
1410	1
1411	3
1412	1
1414	2
1416	1
1417	2
1419	3
1420	2
1422	1
1423	2
1424	1
1426	1
1427	1
1428	4
1430	4
1431	1
1432	2
1433	1
1434	1
1435	1
1436	1
1437	1
1438	1
1440	3
1441	1
1443	1
1444	2
1445	1
1447	2
1450	2
1451	2
1452	1
1453	3
1454	2
1455	2
1457	2
1460	1
1461	1
1462	2
1463	3
1464	2
1465	1
1466	2
1467	2
1468	3
1470	2
1472	3
1473	3
1474	1
1475	1
1476	2
1479	1
1480	1
1482	1
1483	3
1485	1
1486	2
1487	1
1490	2
1491	1
1493	1
1495	1
1498	1
1500	2
1501	1
1502	2
1504	2
1506	2
1507	2
1508	1
1512	2
1513	1
1516	2
1519	1
1520	1
1521	1
1522	1
1526	1
1528	1
1529	1
1531	2
1532	4
1533	2
1535	1
1536	2
1538	1
1541	2
1542	2
1543	1
1544	2
1546	2
1547	3
1548	1
1549	1
1550	4
1552	1
1556	1
1557	3
1558	1
1561	1
1563	2
1564	2
1566	2
1568	1
1569	1
1571	2
1573	1
1574	1
1575	3
1576	1
1577	1
1579	2
1580	1
1581	1
1583	1
1585	1
1587	2
1588	1
1590	2
1592	1
1593	2
1594	2
1595	1
1596	1
1597	1
1598	2
1600	1
1602	2
1605	1
1607	1
1609	1
1610	2
1611	1
1612	1
1613	1
1616	2
1617	1
1619	2
1621	2
1625	1
1627	3
1628	1
1630	1
1632	2
1633	2
1634	1
1636	3
1637	1
1638	1
1641	1
1642	1
1643	2
1644	1
1645	2
1647	1
1649	1
1651	2
1652	2
1655	2
1656	1
1662	1
1663	1
1666	1
1667	1
1668	1
1669	1
1671	1
1673	2
1674	3
1676	1
1678	1
1679	1
1681	2
1682	1
1683	2
1685	1
1686	1
1690	1
1692	1
1693	1
1696	2
1697	1
1698	1
1699	1
1701	1
1702	1
1705	1
1707	3
1708	1
1709	3
1714	1
1716	1
1717	1
1718	1
1721	1
1723	3
1724	1
1726	1
1733	1
1734	1
1735	1
1737	2
1738	1
1742	2
1743	1
1747	1
1750	2
1751	1
1753	1
1754	2
1757	2
1758	2
1759	2
1761	1
1763	1
1765	2
1769	1
1771	1
1773	4
1774	1
1775	1
1776	1
1778	1
1780	1
1781	1
1782	2
1783	1
1784	1
1785	2
1787	2
1788	1
1792	1
1794	1
1795	2
1797	1
1798	1
1799	2
1800	1
1801	1
1803	2
1804	1
1807	2
1811	1
1812	1
1813	1
1814	1
1815	1
1822	1
1824	1
1827	1
1828	1
1837	1
1841	3
1842	2
1843	1
1844	1
1848	1
1849	3
1851	1
1852	1
1853	1
1856	1
1859	1
1860	2
1861	1
1864	1
1865	1
1871	1
1872	1
1876	1
1877	1
1880	1
1881	1
1885	1
1886	1
1889	1
1890	1
1894	2
1895	1
1900	1
1902	1
1908	1
1909	1
1910	1
1911	2
1912	3
1915	1
1916	1
1917	2
1919	2
1923	1
1924	1
1925	1
1926	1
1927	1
1928	1
1929	3
1930	1
1931	1
1935	1
1939	1
1940	2
1943	1
1945	1
1951	2
1952	1
1954	1
1958	1
1962	2
1963	2
1965	2
1967	1
1971	1
1973	2
1975	1
1978	1
1979	1
1988	2
1989	1
1991	1
1993	1
1999	1
2005	2
2009	1
2010	1
2013	1
2015	1
2017	1
2019	1
2021	2
2023	1
2028	1
2030	1
2037	2
2039	1
2040	1
2042	2
2043	1
2045	1
2046	1
2047	1
2049	1
2053	1
2057	1
2060	2
2062	1
2064	1
2067	1
2069	1
2071	1
2072	4
2073	1
2084	1
2091	1
2095	2
2096	1
2100	1
2105	2
2107	2
2108	2
2110	1
2113	1
2120	2
2123	1
2124	1
2128	1
2129	2
2130	1
2131	1
2136	3
2137	1
2138	1
2141	2
2143	3
2151	1
2155	1
2158	1
2159	1
2163	1
2165	2
2167	2
2168	1
2169	1
2170	2
2176	1
2178	1
2179	2
2185	1
2188	1
2189	2
2190	2
2192	1
2195	1
2207	1
2212	1
2217	1
2218	1
2219	1
2221	1
2223	1
2225	1
2229	1
2238	1
2241	1
2242	2
2249	1
2251	1
2252	1
2256	1
2257	2
2259	1
2260	1
2261	1
2265	1
2266	1
2268	1
2269	1
2274	1
2277	1
2282	2
2286	2
2299	1
2303	1
2310	1
2311	1
2317	1
2328	1
2336	1
2338	1
2347	1
2349	1
2358	1
2363	1
2366	2
2367	1
2369	1
2372	1
2373	2
2378	1
2380	1
2385	1
2386	1
2388	1
2390	2
2392	1
2393	1
2398	1
2399	1
2400	1
2402	2
2404	1
2406	1
2409	1
2411	1
2412	1
2413	1
2415	1
2421	1
2431	2
2434	1
2437	1
2443	1
2449	1
2452	1
2454	2
2457	1
2468	1
2469	1
2473	1
2474	1
2475	1
2480	1
2483	1
2488	1
2490	1
2491	1
2492	1
2493	1
2496	2
2510	1
2515	2
2517	1
2525	1
2529	1
2534	1
2539	1
2546	2
2551	1
2558	1
2560	1
2563	1
2566	1
2574	1
2577	1
2582	1
2583	1
2592	1
2594	1
2597	1
2602	1
2604	1
2617	1
2618	1
2620	1
2621	1
2626	1
2627	1
2632	1
2635	1
2637	1
2639	1
2648	1
2656	1
2660	1
2661	1
2672	1
2679	1
2680	1
2684	1
2692	1
2698	1
2702	1
2705	1
2710	1
2719	1
2722	1
2728	1
2734	2
2737	1
2740	1
2744	1
2751	1
2756	1
2763	1
2765	1
2766	1
2780	2
2783	1
2784	1
2798	1
2799	1
2812	1
2815	1
2818	1
2825	1
2828	1
2832	1
2835	1
2846	1
2851	1
2856	1
2857	1
2876	1
2900	1
2933	1
2934	2
2935	1
2958	1
2959	1
2962	1
2975	1
2993	1
2996	1
3006	1
3012	1
3013	1
3016	1
3043	1
3054	1
3056	1
3058	1
3066	1
3069	1
3070	1
3077	1
3101	1
3118	1
3131	1
3149	1
3151	1
3153	1
3183	1
3215	1
3222	1
3229	1
3231	1
3232	1
3235	1
3259	1
3263	1
3293	1
3298	1
3333	1
3362	1
3363	1
3380	2
3391	1
3403	1
3408	1
3418	1
3429	1
3430	1
3449	1
3452	1
3454	1
3471	1
3475	1
3480	1
3483	1
3491	1
3492	1
3502	1
3514	1
3523	1
3526	1
3535	1
3536	1
3563	1
3578	1
3598	1
3606	1
3622	1
3627	1
3635	1
3641	1
3647	1
3648	1
3666	1
3671	1
3673	1
3676	1
3687	1
3709	1
3712	1
3715	1
3727	1
3770	1
3781	1
3790	1
3808	1
3833	1
3854	1
3871	1
3879	1
3901	1
3929	1
3938	1
3948	1
3969	1
3992	1
3999	1
4030	1
4038	1
4039	1
4042	1
4068	1
4084	1
4087	1
4130	1
4134	1
4156	1
4159	1
4162	1
4175	1
4188	1
4192	1
4222	1
4225	1
4254	1
4268	1
4273	1
4277	1
4338	1
4339	1
4411	1
4451	1
4463	1
4492	1
4503	1
4541	1
4645	1
4658	1
4707	1
4710	1
4825	1
4858	1
4865	1
4910	1
5001	1
5002	1
5017	1
5047	1
5197	1
5212	1
5259	1
5279	1
5455	1
5466	1
5578	1
5657	1
5706	1
5747	1
5923	1
5927	1
5963	1
5995	1
6600	1
6849	1
6883	1
6962	1
7070	1
7110	1
7281	1
7355	1
7393	1
7396	1
7832	1
7875	1
7924	1
8076	1
8079	1
8231	1
8498	1
8796	1
8826	1
10090	1
11046	1
11790	1
11839	1
12929	1
13903	1
16548	1
18248	1
24898	1
27279	1
517169	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
..___...._.___.__.._....._...._........._............._........._.____._
........._...__...__......_............_......_._._.._.....
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]