File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e6/ccc7e0fbe6c4703f24325a829acb16/.command.log
Size
13.6 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-a51633-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/6b5731c686d64143d4875cfa219b53/aih-tih-sc-a51633-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e6/ccc7e0fbe6c4703f24325a829acb16/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e6/ccc7e0fbe6c4703f24325a829acb16/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/863f479da901be89fd90aeb1735332/aih-tih-sc-a51633-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
PTK2--TRAPPC9
starfusion
arriba
PPP3CC--NPM2
starfusion
arriba
MAGI1--LRIG1
starfusion
arriba
CREBBP--TRAP1
starfusion
arriba
BDH1--DLG1
starfusion
arriba
PDLIM2--XPO7
starfusion
arriba
LINC01134--PRDM16
starfusion
arriba
USP7--U91319.1
starfusion
arriba
ARFGEF1--CSMD1
starfusion
arriba
NDUFS8--PPP6R3
starfusion
arriba
ZNF436--FUCA1
starfusion
arriba
ATXN2L--RBFOX1
starfusion
arriba
CHN2--WIPF3
starfusion
arriba
ABCC1--AC116348.1
starfusion
arriba
ZKSCAN1--AC004522.5
starfusion
POLR2J--ST7
starfusion
ANKRD13A--ACACB
starfusion
arriba
NUP85--CNNM3-DT
starfusion
arriba
TLK2--FAM157A
starfusion
arriba
TLK2P1--AC110079.1
starfusion
AC083837.1--IL7
starfusion
arriba
SH3PXD2A--LINC02620
starfusion
ST7--CCDC187
starfusion
arriba
OTUB1--ESRRA
starfusion
ACSM1--MARF1
starfusion
arriba
SLC7A1--HMGB1
starfusion
arriba
ZNF720--FAM153DP
starfusion
arriba
SCRIB--ADAM28
starfusion
AC243829.5--AC233699.1
starfusion
MYO7A--EMSY
starfusion
arriba
PARN--AC130456.3
starfusion
AP006294.2--ENPP7P3
starfusion
SIL1--STING1
starfusion
UPK3B--AC211486.3
starfusion
PTTG1IP--PTTG1IP
arriba
PTTG1IP--ITGB2
arriba
HIPK2--TBXAS1
arriba
TVP23C--CDRT4
arriba
STX16--NPEPL1
arriba
RTEL1--ZGPAT
arriba
PCDHA4--PCDHAC1
arriba
PCDHA4--PCDHAC2
arriba
PCDHA4--PCDHA13
arriba
RBM14--RBM4B
arriba
NOMO3--CHP2
arriba
NOMO3--PRKCB
arriba
TMC5--PARN
arriba
FANCA--FANCA
arriba
FANCA--SPIRE2
arriba
SAMD12--AMYH02020865.1
arriba
SAMD12--BMS1P14
arriba
ZNF720--ABCD1P3
arriba
KLRC4--KLRK1
arriba
DNAJC6--PDE1C
arriba
PDE1C--DNAJC6
arriba
NPHP3--ACAD11
arriba
PPP3CC--XPO7
arriba
ATP8B1--AC091588.2
arriba
ATP8B1--AC027449.1
arriba
AC015911.9--SLFN12L
arriba
CRYZL2P--SEC16B
arriba
ZFR--SUB1
arriba
NTAN1--AC126763.1
arriba
NTAN1--AC137803.1
arriba

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Processing PTK2--TRAPPC9:   0%|          | 0/64 [00:00<?, ?it/s]
Processing PTK2--TRAPPC9:   2%|▏         | 1/64 [00:00<00:06,  9.21it/s]
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Processing MAGI1--LRIG1:   3%|▎         | 2/64 [00:00<00:06,  9.45it/s]
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Processing CREBBP--TRAP1:   5%|▍         | 3/64 [00:00<00:06,  9.53it/s]
Processing CREBBP--TRAP1:   6%|▋         | 4/64 [00:00<00:06,  9.57it/s]
Processing BDH1--DLG1:   6%|▋         | 4/64 [00:00<00:06,  9.57it/s]   
Processing BDH1--DLG1:   8%|▊         | 5/64 [00:00<00:06,  9.59it/s]
Processing PDLIM2--XPO7:   8%|▊         | 5/64 [00:00<00:06,  9.59it/s]
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Processing USP7--U91319.1:  11%|█         | 7/64 [00:00<00:05,  9.60it/s]   
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Processing ARFGEF1--CSMD1:  12%|█▎        | 8/64 [00:00<00:05,  9.61it/s]
Processing ARFGEF1--CSMD1:  14%|█▍        | 9/64 [00:00<00:05,  9.62it/s]
Processing NDUFS8--PPP6R3:  14%|█▍        | 9/64 [00:00<00:05,  9.62it/s]
Processing NDUFS8--PPP6R3:  16%|█▌        | 10/64 [00:01<00:05,  9.62it/s]
Processing ZNF436--FUCA1:  16%|█▌        | 10/64 [00:01<00:05,  9.62it/s] 
Processing ZNF436--FUCA1:  17%|█▋        | 11/64 [00:01<00:05,  9.63it/s]
Processing ATXN2L--RBFOX1:  17%|█▋        | 11/64 [00:01<00:05,  9.63it/s]
Processing ATXN2L--RBFOX1:  19%|█▉        | 12/64 [00:01<00:05,  9.63it/s]
Processing CHN2--WIPF3:  19%|█▉        | 12/64 [00:01<00:05,  9.63it/s]   
Processing CHN2--WIPF3:  20%|██        | 13/64 [00:01<00:05,  9.63it/s]
Processing ABCC1--AC116348.1:  20%|██        | 13/64 [00:01<00:05,  9.63it/s]
Processing ABCC1--AC116348.1:  22%|██▏       | 14/64 [00:01<00:05,  9.63it/s]
Processing ZKSCAN1--AC004522.5:  22%|██▏       | 14/64 [00:01<00:05,  9.63it/s]
Processing ZKSCAN1--AC004522.5:  23%|██▎       | 15/64 [00:01<00:05,  9.63it/s]
Processing POLR2J--ST7:  23%|██▎       | 15/64 [00:01<00:05,  9.63it/s]        
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Processing ANKRD13A--ACACB:  25%|██▌       | 16/64 [00:01<00:04,  9.63it/s]
Processing ANKRD13A--ACACB:  27%|██▋       | 17/64 [00:01<00:04,  9.63it/s]
Processing NUP85--CNNM3-DT:  27%|██▋       | 17/64 [00:01<00:04,  9.63it/s]
Processing NUP85--CNNM3-DT:  28%|██▊       | 18/64 [00:01<00:04,  9.63it/s]
Processing TLK2--FAM157A:  28%|██▊       | 18/64 [00:01<00:04,  9.63it/s]  
Processing TLK2--FAM157A:  30%|██▉       | 19/64 [00:01<00:04,  9.63it/s]
Processing TLK2P1--AC110079.1:  30%|██▉       | 19/64 [00:01<00:04,  9.63it/s]
Processing TLK2P1--AC110079.1:  31%|███▏      | 20/64 [00:02<00:04,  9.63it/s]
Processing AC083837.1--IL7:  31%|███▏      | 20/64 [00:02<00:04,  9.63it/s]   
Processing AC083837.1--IL7:  33%|███▎      | 21/64 [00:02<00:04,  9.63it/s]
Processing SH3PXD2A--LINC02620:  33%|███▎      | 21/64 [00:02<00:04,  9.63it/s]
Processing SH3PXD2A--LINC02620:  34%|███▍      | 22/64 [00:02<00:04,  9.63it/s]
Processing ST7--CCDC187:  34%|███▍      | 22/64 [00:02<00:04,  9.63it/s]       
Processing ST7--CCDC187:  36%|███▌      | 23/64 [00:02<00:04,  9.63it/s]
Processing OTUB1--ESRRA:  36%|███▌      | 23/64 [00:02<00:04,  9.63it/s]
Processing OTUB1--ESRRA:  38%|███▊      | 24/64 [00:02<00:04,  9.63it/s]
Processing ACSM1--MARF1:  38%|███▊      | 24/64 [00:02<00:04,  9.63it/s]
Processing ACSM1--MARF1:  39%|███▉      | 25/64 [00:02<00:04,  9.63it/s]
Processing SLC7A1--HMGB1:  39%|███▉      | 25/64 [00:02<00:04,  9.63it/s]
Processing SLC7A1--HMGB1:  41%|████      | 26/64 [00:02<00:03,  9.63it/s]
Processing ZNF720--FAM153DP:  41%|████      | 26/64 [00:02<00:03,  9.63it/s]
Processing ZNF720--FAM153DP:  42%|████▏     | 27/64 [00:02<00:03,  9.63it/s]
Processing SCRIB--ADAM28:  42%|████▏     | 27/64 [00:02<00:03,  9.63it/s]   
Processing SCRIB--ADAM28:  44%|████▍     | 28/64 [00:02<00:03,  9.63it/s]
Processing AC243829.5--AC233699.1:  44%|████▍     | 28/64 [00:02<00:03,  9.63it/s]
Processing AC243829.5--AC233699.1:  45%|████▌     | 29/64 [00:03<00:03,  9.63it/s]
Processing MYO7A--EMSY:  45%|████▌     | 29/64 [00:03<00:03,  9.63it/s]           
Processing MYO7A--EMSY:  47%|████▋     | 30/64 [00:03<00:03,  9.63it/s]
Processing PARN--AC130456.3:  47%|████▋     | 30/64 [00:03<00:03,  9.63it/s]
Processing PARN--AC130456.3:  48%|████▊     | 31/64 [00:03<00:03,  9.63it/s]
Processing AP006294.2--ENPP7P3:  48%|████▊     | 31/64 [00:03<00:03,  9.63it/s]
Processing AP006294.2--ENPP7P3:  50%|█████     | 32/64 [00:03<00:03,  9.63it/s]
Processing SIL1--STING1:  50%|█████     | 32/64 [00:03<00:03,  9.63it/s]       
Processing SIL1--STING1:  52%|█████▏    | 33/64 [00:03<00:03,  9.63it/s]
Processing UPK3B--AC211486.3:  52%|█████▏    | 33/64 [00:03<00:03,  9.63it/s]
Processing UPK3B--AC211486.3:  53%|█████▎    | 34/64 [00:03<00:03,  9.63it/s]
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Processing PTTG1IP--PTTG1IP:  55%|█████▍    | 35/64 [00:03<00:03,  9.63it/s]
Processing PTTG1IP--ITGB2:  55%|█████▍    | 35/64 [00:03<00:03,  9.63it/s]  
Processing PTTG1IP--ITGB2:  56%|█████▋    | 36/64 [00:03<00:02,  9.63it/s]
Processing HIPK2--TBXAS1:  56%|█████▋    | 36/64 [00:03<00:02,  9.63it/s] 
Processing HIPK2--TBXAS1:  58%|█████▊    | 37/64 [00:03<00:02,  9.63it/s]
Processing TVP23C--CDRT4:  58%|█████▊    | 37/64 [00:03<00:02,  9.63it/s]
Processing TVP23C--CDRT4:  59%|█████▉    | 38/64 [00:03<00:02,  9.63it/s]
Processing STX16--NPEPL1:  59%|█████▉    | 38/64 [00:03<00:02,  9.63it/s]
Processing STX16--NPEPL1:  61%|██████    | 39/64 [00:04<00:02,  9.63it/s]
Processing RTEL1--ZGPAT:  61%|██████    | 39/64 [00:04<00:02,  9.63it/s] 
Processing RTEL1--ZGPAT:  62%|██████▎   | 40/64 [00:04<00:02,  9.63it/s]
Processing PCDHA4--PCDHAC1:  62%|██████▎   | 40/64 [00:04<00:02,  9.63it/s]
Processing PCDHA4--PCDHAC1:  64%|██████▍   | 41/64 [00:04<00:02,  9.63it/s]
Processing PCDHA4--PCDHAC2:  64%|██████▍   | 41/64 [00:04<00:02,  9.63it/s]
Processing PCDHA4--PCDHAC2:  66%|██████▌   | 42/64 [00:04<00:02,  9.63it/s]
Processing PCDHA4--PCDHA13:  66%|██████▌   | 42/64 [00:04<00:02,  9.63it/s]
Processing PCDHA4--PCDHA13:  67%|██████▋   | 43/64 [00:04<00:02,  9.63it/s]
Processing RBM14--RBM4B:  67%|██████▋   | 43/64 [00:04<00:02,  9.63it/s]   
Processing RBM14--RBM4B:  69%|██████▉   | 44/64 [00:04<00:02,  9.63it/s]
Processing NOMO3--CHP2:  69%|██████▉   | 44/64 [00:04<00:02,  9.63it/s] 
Processing NOMO3--CHP2:  70%|███████   | 45/64 [00:04<00:01,  9.63it/s]
Processing NOMO3--PRKCB:  70%|███████   | 45/64 [00:04<00:01,  9.63it/s]
Processing NOMO3--PRKCB:  72%|███████▏  | 46/64 [00:04<00:01,  9.63it/s]
Processing TMC5--PARN:  72%|███████▏  | 46/64 [00:04<00:01,  9.63it/s]  
Processing TMC5--PARN:  73%|███████▎  | 47/64 [00:04<00:01,  9.62it/s]
Processing FANCA--FANCA:  73%|███████▎  | 47/64 [00:04<00:01,  9.62it/s]
Processing FANCA--FANCA:  75%|███████▌  | 48/64 [00:04<00:01,  9.63it/s]
Processing FANCA--SPIRE2:  75%|███████▌  | 48/64 [00:04<00:01,  9.63it/s]
Processing FANCA--SPIRE2:  77%|███████▋  | 49/64 [00:05<00:01,  9.63it/s]
Processing SAMD12--AMYH02020865.1:  77%|███████▋  | 49/64 [00:05<00:01,  9.63it/s]
Processing SAMD12--AMYH02020865.1:  78%|███████▊  | 50/64 [00:05<00:01,  9.63it/s]
Processing SAMD12--BMS1P14:  78%|███████▊  | 50/64 [00:05<00:01,  9.63it/s]       
Processing SAMD12--BMS1P14:  80%|███████▉  | 51/64 [00:05<00:01,  9.63it/s]
Processing ZNF720--ABCD1P3:  80%|███████▉  | 51/64 [00:05<00:01,  9.63it/s]
Processing ZNF720--ABCD1P3:  81%|████████▏ | 52/64 [00:05<00:01,  9.63it/s]
Processing KLRC4--KLRK1:  81%|████████▏ | 52/64 [00:05<00:01,  9.63it/s]   
Processing KLRC4--KLRK1:  83%|████████▎ | 53/64 [00:05<00:01,  9.63it/s]
Processing DNAJC6--PDE1C:  83%|████████▎ | 53/64 [00:05<00:01,  9.63it/s]
Processing DNAJC6--PDE1C:  84%|████████▍ | 54/64 [00:05<00:01,  9.63it/s]
Processing PDE1C--DNAJC6:  84%|████████▍ | 54/64 [00:05<00:01,  9.63it/s]
Processing PDE1C--DNAJC6:  86%|████████▌ | 55/64 [00:05<00:00,  9.63it/s]
Processing NPHP3--ACAD11:  86%|████████▌ | 55/64 [00:05<00:00,  9.63it/s]
Processing NPHP3--ACAD11:  88%|████████▊ | 56/64 [00:05<00:00,  9.63it/s]
Processing PPP3CC--XPO7:  88%|████████▊ | 56/64 [00:05<00:00,  9.63it/s] 
Processing PPP3CC--XPO7:  89%|████████▉ | 57/64 [00:05<00:00,  9.63it/s]
Processing ATP8B1--AC091588.2:  89%|████████▉ | 57/64 [00:05<00:00,  9.63it/s]
Processing ATP8B1--AC091588.2:  91%|█████████ | 58/64 [00:06<00:00,  9.63it/s]
Processing ATP8B1--AC027449.1:  91%|█████████ | 58/64 [00:06<00:00,  9.63it/s]
Processing ATP8B1--AC027449.1:  92%|█████████▏| 59/64 [00:06<00:00,  9.63it/s]
Processing AC015911.9--SLFN12L:  92%|█████████▏| 59/64 [00:06<00:00,  9.63it/s]
Processing AC015911.9--SLFN12L:  94%|█████████▍| 60/64 [00:06<00:00,  9.63it/s]
Processing CRYZL2P--SEC16B:  94%|█████████▍| 60/64 [00:06<00:00,  9.63it/s]    
Processing CRYZL2P--SEC16B:  95%|█████████▌| 61/64 [00:06<00:00,  9.63it/s]
Processing ZFR--SUB1:  95%|█████████▌| 61/64 [00:06<00:00,  9.63it/s]      
Processing ZFR--SUB1:  97%|█████████▋| 62/64 [00:06<00:00,  9.63it/s]
Processing NTAN1--AC126763.1:  97%|█████████▋| 62/64 [00:06<00:00,  9.63it/s]
Processing NTAN1--AC126763.1:  98%|█████████▊| 63/64 [00:06<00:00,  9.63it/s]
Processing NTAN1--AC137803.1:  98%|█████████▊| 63/64 [00:06<00:00,  9.63it/s]
Processing NTAN1--AC137803.1: 100%|██████████| 64/64 [00:06<00:00,  9.63it/s]
Processing NTAN1--AC137803.1: 100%|██████████| 64/64 [00:06<00:00,  9.62it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory