File Info
- Filename
- aih-tih-sc-a51633-R1_A23YTGFLT4_1.fusions.csv
- Full Path
- s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e6/ccc7e0fbe6c4703f24325a829acb16/aih-tih-sc-a51633-R1_A23YTGFLT4_1.fusions.csv
- Size
- 16.4 KB
- Task
- NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-a51633-R1_A23YTGFLT4_1)
- Attempt
Content
View in new tab| Fusion | Databases | Score | Explained score | arriba | starfusion |
| PTK2--TRAPPC9 | Mitelman,FusionGDB2 | 0.375 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.000) | position: chr8:141001125#chr8:140405698,reading-frame: .,type: deletion,split_reads1: 50,split_reads2: 192,discordant_mates: 0,coverage1: 986,coverage2: 4081,confidence: high | position: chr8:141001125:-#chr8:140405698:-,junction_reads: 248,spanning_reads: 0,ffmp: 0.8371 |
| PPP3CC--NPM2 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr8:22533018#chr8:22025436,reading-frame: in-frame,type: duplication,split_reads1: 84,split_reads2: 56,discordant_mates: 9,coverage1: 1757,coverage2: 1216,confidence: high | position: chr8:22533018:+#chr8:22025436:+,junction_reads: 146,spanning_reads: 9,ffmp: 0.514 | |
| MAGI1--LRIG1 | Mitelman,FusionGDB2 | 0.375 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.000) | position: chr3:66037996#chr3:66417266,reading-frame: out-of-frame,type: duplication,split_reads1: 74,split_reads2: 47,discordant_mates: 0,coverage1: 7511,coverage2: 1610,confidence: high | position: chr3:66037996:-#chr3:66417266:-,junction_reads: 131,spanning_reads: 0,ffmp: 0.4422 |
| CREBBP--TRAP1 | Mitelman,FusionGDB2 | 0.375 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.000) | position: chr16:3850297#chr16:3690985,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 66,split_reads2: 60,discordant_mates: 2,coverage1: 3910,coverage2: 1412,confidence: high | position: chr16:3850297:-#chr16:3690985:-,junction_reads: 128,spanning_reads: 3,ffmp: 0.4421 |
| BDH1--DLG1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr3:197546361#chr3:197194589,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 86,split_reads2: 18,discordant_mates: 4,coverage1: 1280,coverage2: 1357,confidence: high | position: chr3:197546361:-#chr3:197194589:-,junction_reads: 105,spanning_reads: 4,ffmp: 0.3679 | |
| PDLIM2--XPO7 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr8:22589741#chr8:21966857,reading-frame: out-of-frame,type: duplication,split_reads1: 59,split_reads2: 32,discordant_mates: 2,coverage1: 9669,coverage2: 2121,confidence: high | position: chr8:22589741:+#chr8:21966857:+,junction_reads: 93,spanning_reads: 3,ffmp: 0.324 | |
| LINC01134--PRDM16 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr1:3900631#chr1:3385152,reading-frame: .,type: duplication,split_reads1: 17,split_reads2: 67,discordant_mates: 0,coverage1: 25,coverage2: 1220,confidence: high | position: chr1:3900631:+#chr1:3385152:+,junction_reads: 88,spanning_reads: 0,ffmp: 0.297 | |
| USP7--U91319.1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr16:8963207#chr16:13474210,reading-frame: out-of-frame,type: inversion,split_reads1: 54,split_reads2: 14,discordant_mates: 0,coverage1: 5104,coverage2: 17,confidence: high | position: chr16:8963207:-#chr16:13474210:+,junction_reads: 71,spanning_reads: 0,ffmp: 0.2396 | |
| ARFGEF1--CSMD1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr8:67200396#chr8:3409605,reading-frame: out-of-frame,type: deletion,split_reads1: 30,split_reads2: 29,discordant_mates: 3,coverage1: 1722,coverage2: 120,confidence: high | position: chr8:67200396:-#chr8:3409605:-,junction_reads: 63,spanning_reads: 3,ffmp: 0.2227 | |
| NDUFS8--PPP6R3 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr11:68033283#chr11:68600341,reading-frame: out-of-frame,type: deletion,split_reads1: 40,split_reads2: 8,discordant_mates: 5,coverage1: 3090,coverage2: 1812,confidence: high | position: chr11:68033283:+#chr11:68600341:+,junction_reads: 50,spanning_reads: 5,ffmp: 0.1857 | |
| ZNF436--FUCA1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr1:23363040#chr1:23865625,reading-frame: out-of-frame,type: duplication,split_reads1: 15,split_reads2: 27,discordant_mates: 1,coverage1: 1191,coverage2: 948,confidence: high | position: chr1:23363040:-#chr1:23865625:-,junction_reads: 44,spanning_reads: 1,ffmp: 0.1515 | |
| ATXN2L--RBFOX1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr16:28833354#chr16:7518147,reading-frame: out-of-frame,type: duplication,split_reads1: 11,split_reads2: 22,discordant_mates: 0,coverage1: 4886,coverage2: 159,confidence: high | position: chr16:28833354:+#chr16:7518147:+,junction_reads: 43,spanning_reads: 0,ffmp: 0.1451 | |
| CHN2--WIPF3 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr7:29400828#chr7:29834668,reading-frame: out-of-frame,type: deletion,split_reads1: 17,split_reads2: 23,discordant_mates: 0,coverage1: 409,coverage2: 316,confidence: high | position: chr7:29400828:+#chr7:29834668:+,junction_reads: 41,spanning_reads: 0,ffmp: 0.1384 | |
| ABCC1--AC116348.1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr16:16056295#chr16:30481343,reading-frame: out-of-frame,type: inversion,split_reads1: 9,split_reads2: 16,discordant_mates: 0,coverage1: 3316,coverage2: 30,confidence: high | position: chr16:16056295:+#chr16:30481343:-,junction_reads: 41,spanning_reads: 0,ffmp: 0.1384 | |
| ZKSCAN1--AC004522.5 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr7:100024307:+#chr7:100008121:+,junction_reads: 28,spanning_reads: 2,ffmp: 0.1013 | ||
| POLR2J--ST7 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr7:102476181:-#chr7:117190834:+,junction_reads: 26,spanning_reads: 0,ffmp: 0.0439 | ||
| ANKRD13A--ACACB | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr12:110013249#chr12:109254288,reading-frame: out-of-frame,type: duplication,split_reads1: 8,split_reads2: 17,discordant_mates: 0,coverage1: 1329,coverage2: 838,confidence: high | position: chr12:110013249:+#chr12:109254288:+,junction_reads: 26,spanning_reads: 0,ffmp: 0.0878 | |
| NUP85--CNNM3-DT | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr17:75218306#chr2:96812489,reading-frame: out-of-frame,type: translocation,split_reads1: 15,split_reads2: 10,discordant_mates: 1,coverage1: 1984,coverage2: 13,confidence: high | position: chr17:75218306:+#chr2:96812489:-,junction_reads: 25,spanning_reads: 1,ffmp: 0.0878 | |
| TLK2--FAM157A | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr17:62560126#chr3:198180755,reading-frame: out-of-frame,type: translocation,split_reads1: 1,split_reads2: 11,discordant_mates: 0,coverage1: 1345,coverage2: 794,confidence: high | position: chr17:62560126:+#chr3:198180755:+,junction_reads: 22,spanning_reads: 0,ffmp: 0.0674 | |
| TLK2P1--AC110079.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:34039043:-#chr4:118595912:+,junction_reads: 21,spanning_reads: 0,ffmp: 0.0656 | ||
| AC083837.1--IL7 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr8:78805695#chr8:78798208,reading-frame: .,type: inversion,split_reads1: 2,split_reads2: 15,discordant_mates: 0,coverage1: 34,coverage2: 475,confidence: high | position: chr8:78805695:+#chr8:78798208:-,junction_reads: 18,spanning_reads: 0,ffmp: 0.0608 | |
| SH3PXD2A--LINC02620 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr10:103693028:-#chr10:104477057:-,junction_reads: 17,spanning_reads: 0,ffmp: 0.0574 | ||
| ST7--CCDC187 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr7:117170976#chr9:136297821,reading-frame: in-frame,type: translocation,split_reads1: 7,split_reads2: 9,discordant_mates: 0,coverage1: 291,coverage2: 25,confidence: high | position: chr7:117170976:+#chr9:136297821:-,junction_reads: 16,spanning_reads: 0,ffmp: 0.054 | |
| OTUB1--ESRRA | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr11:63988752:+#chr11:64313951:+,junction_reads: 14,spanning_reads: 0,ffmp: 0.0473 | ||
| ACSM1--MARF1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr16:20625423#chr16:15602203,reading-frame: in-frame,type: deletion,split_reads1: 10,split_reads2: 4,discordant_mates: 0,coverage1: 149,coverage2: 904,confidence: high | position: chr16:20625423:-#chr16:15602203:-,junction_reads: 14,spanning_reads: 0,ffmp: 0.0473 | |
| SLC7A1--HMGB1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr13:29595416#chr13:30463694,reading-frame: .,type: duplication,split_reads1: 0,split_reads2: 10,discordant_mates: 1,coverage1: 340,coverage2: 1880,confidence: high | position: chr13:29595416:-#chr13:30463694:-,junction_reads: 14,spanning_reads: 1,ffmp: 0.0507 | |
| ZNF720--FAM153DP | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr16:31723353#chr16:32591834,reading-frame: out-of-frame,type: deletion,split_reads1: 17,split_reads2: 3,discordant_mates: 2,coverage1: 1235,coverage2: 8,confidence: high | position: chr16:31723353:+#chr16:32604906:+,junction_reads: 13,spanning_reads: 0,ffmp: 0.0439 | |
| SCRIB--ADAM28 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr8:143803383:-#chr8:24320236:+,junction_reads: 12,spanning_reads: 0,ffmp: 0.0405 | ||
| AC243829.5--AC233699.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:36225277:-#chr17:36274199:+,junction_reads: 12,spanning_reads: 0,ffmp: 0.0203 | ||
| MYO7A--EMSY | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr11:77177643#chr11:76446900,reading-frame: out-of-frame,type: duplication,split_reads1: 4,split_reads2: 6,discordant_mates: 0,coverage1: 347,coverage2: 765,confidence: high | position: chr11:77177643:+#chr11:76446900:+,junction_reads: 11,spanning_reads: 0,ffmp: 0.0371 | |
| PARN--AC130456.3 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr16:14586318:-#chr16:19487320:-,junction_reads: 10,spanning_reads: 1,ffmp: 0.0372 | ||
| AP006294.2--ENPP7P3 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr11:3580927:-#chr3:130167943:-,junction_reads: 9,spanning_reads: 0,ffmp: 0.0304 | ||
| SIL1--STING1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:139021171:-#chr5:139482732:-,junction_reads: 8,spanning_reads: 0,ffmp: 0.027 | ||
| UPK3B--AC211486.3 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr7:76511882:+#chr7:75355683:-,junction_reads: 6,spanning_reads: 3,ffmp: 0.0225 | ||
| PTTG1IP--PTTG1IP | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr21:44861163#chr21:44882673,reading-frame: out-of-frame,type: duplication,split_reads1: 170,split_reads2: 85,discordant_mates: 9,coverage1: 6346,coverage2: 135,confidence: high | |
| PTTG1IP--ITGB2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr21:44861163#chr21:44882673,reading-frame: out-of-frame,type: duplication,split_reads1: 170,split_reads2: 85,discordant_mates: 9,coverage1: 6346,coverage2: 135,confidence: high | ||
| HIPK2--TBXAS1 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr7:139777605#chr7:139850281,reading-frame: out-of-frame,type: duplication/5'-5',split_reads1: 148,split_reads2: 59,discordant_mates: 0,coverage1: 8916,coverage2: 95,confidence: high | |
| TVP23C--CDRT4 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr17:15503098#chr17:15440285,reading-frame: stop-codon,type: deletion/read-through,split_reads1: 61,split_reads2: 71,discordant_mates: 3,coverage1: 1307,coverage2: 432,confidence: high | |
| STX16--NPEPL1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr20:58673711#chr20:58691724,reading-frame: .,type: deletion/read-through,split_reads1: 63,split_reads2: 51,discordant_mates: 1,coverage1: 2924,coverage2: 580,confidence: high | ||
| RTEL1--ZGPAT | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr20:63693283#chr20:63733219,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 46,split_reads2: 58,discordant_mates: 1,coverage1: 2623,coverage2: 3381,confidence: high | ||
| PCDHA4--PCDHAC1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140809572#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 37,split_reads2: 36,discordant_mates: 4,coverage1: 809,coverage2: 607,confidence: high | ||
| PCDHA4--PCDHAC2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140809572#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 37,split_reads2: 36,discordant_mates: 4,coverage1: 809,coverage2: 607,confidence: high | ||
| PCDHA4--PCDHA13 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140809572#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 37,split_reads2: 36,discordant_mates: 4,coverage1: 809,coverage2: 607,confidence: high | ||
| RBM14--RBM4B | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr11:66617057#chr11:66677091,reading-frame: out-of-frame,type: inversion,split_reads1: 42,split_reads2: 35,discordant_mates: 0,coverage1: 6627,coverage2: 1765,confidence: high | ||
| NOMO3--CHP2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr16:16243261#chr16:23810840,reading-frame: out-of-frame,type: deletion,split_reads1: 48,split_reads2: 13,discordant_mates: 2,coverage1: 5052,coverage2: 22,confidence: high | ||
| NOMO3--PRKCB | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr16:16243261#chr16:23810840,reading-frame: out-of-frame,type: deletion,split_reads1: 48,split_reads2: 13,discordant_mates: 2,coverage1: 5052,coverage2: 22,confidence: high | ||
| TMC5--PARN | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr16:19490568#chr16:14585402,reading-frame: out-of-frame,type: duplication/5'-5',split_reads1: 43,split_reads2: 4,discordant_mates: 2,coverage1: 2272,coverage2: 6,confidence: high | ||
| FANCA--FANCA | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr16:89814520#chr16:89817972,reading-frame: out-of-frame,type: duplication,split_reads1: 22,split_reads2: 6,discordant_mates: 0,coverage1: 608,coverage2: 15,confidence: high | |
| FANCA--SPIRE2 | Mitelman,FusionGDB2 | 0.312 | 0.5 * (0.125) + 0.5 * (0.500 + 0.000) | position: chr16:89814520#chr16:89817972,reading-frame: out-of-frame,type: duplication,split_reads1: 22,split_reads2: 6,discordant_mates: 0,coverage1: 608,coverage2: 15,confidence: high | |
| SAMD12--AMYH02020865.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr8:118379560#chr9:40529624,reading-frame: out-of-frame,type: translocation/5'-5',split_reads1: 23,split_reads2: 1,discordant_mates: 0,coverage1: 2468,coverage2: 1,confidence: high | ||
| SAMD12--BMS1P14 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr8:118379560#chr9:40529624,reading-frame: out-of-frame,type: translocation,split_reads1: 23,split_reads2: 1,discordant_mates: 0,coverage1: 2468,coverage2: 1,confidence: high | ||
| ZNF720--ABCD1P3 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr16:31723353#chr16:32591834,reading-frame: out-of-frame,type: deletion,split_reads1: 17,split_reads2: 3,discordant_mates: 2,coverage1: 1235,coverage2: 8,confidence: high | ||
| KLRC4--KLRK1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr12:10407636#chr12:10388875,reading-frame: stop-codon,type: deletion/read-through,split_reads1: 13,split_reads2: 6,discordant_mates: 0,coverage1: 87,coverage2: 140,confidence: high | ||
| DNAJC6--PDE1C | Mitelman,FusionGDB2 | 0.312 | 0.5 * (0.125) + 0.5 * (0.500 + 0.000) | position: chr1:65389627#chr7:31775732,reading-frame: in-frame,type: translocation,split_reads1: 5,split_reads2: 13,discordant_mates: 0,coverage1: 21,coverage2: 81,confidence: high | |
| PDE1C--DNAJC6 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr7:31809031#chr1:65384193,reading-frame: out-of-frame,type: translocation,split_reads1: 4,split_reads2: 5,discordant_mates: 0,coverage1: 99,coverage2: 37,confidence: high | ||
| NPHP3--ACAD11 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr3:132681914#chr3:132644896,reading-frame: in-frame,type: deletion/read-through,split_reads1: 8,split_reads2: 8,discordant_mates: 2,coverage1: 368,coverage2: 411,confidence: high | ||
| PPP3CC--XPO7 | Mitelman,FusionGDB2 | 0.312 | 0.5 * (0.125) + 0.5 * (0.500 + 0.000) | position: chr8:22533018#chr8:22018685,reading-frame: out-of-frame,type: duplication,split_reads1: 16,split_reads2: 2,discordant_mates: 0,coverage1: 1757,coverage2: 19,confidence: high | |
| ATP8B1--AC091588.2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr18:57701039#chr18:22303523,reading-frame: out-of-frame,type: deletion,split_reads1: 16,split_reads2: 1,discordant_mates: 0,coverage1: 1370,coverage2: 1,confidence: high | ||
| ATP8B1--AC027449.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr18:57701039#chr18:22303523,reading-frame: out-of-frame,type: deletion,split_reads1: 16,split_reads2: 1,discordant_mates: 0,coverage1: 1370,coverage2: 1,confidence: high | ||
| AC015911.9--SLFN12L | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:35522279#chr17:35480195,reading-frame: .,type: deletion/read-through,split_reads1: 5,split_reads2: 7,discordant_mates: 2,coverage1: 198,coverage2: 108,confidence: high | ||
| CRYZL2P--SEC16B | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr1:178026155#chr1:177968039,reading-frame: .,type: deletion/read-through,split_reads1: 2,split_reads2: 8,discordant_mates: 2,coverage1: 29,coverage2: 247,confidence: high | ||
| ZFR--SUB1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:32363948#chr5:32543387,reading-frame: out-of-frame,type: duplication/5'-5',split_reads1: 6,split_reads2: 5,discordant_mates: 1,coverage1: 1067,coverage2: 7,confidence: high | ||
| NTAN1--AC126763.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr16:15055891#chr16:15340565,reading-frame: out-of-frame,type: inversion,split_reads1: 4,split_reads2: 4,discordant_mates: 0,coverage1: 1163,coverage2: 8,confidence: high | ||
| NTAN1--AC137803.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr16:15055891#chr16:15340565,reading-frame: out-of-frame,type: inversion,split_reads1: 4,split_reads2: 4,discordant_mates: 0,coverage1: 1163,coverage2: 8,confidence: high |
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