File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/d511a1ff2b50805cb6b298aba2fe57/.command.log
Size
4.9 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-150e73-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/d511a1ff2b50805cb6b298aba2fe57/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/d511a1ff2b50805cb6b298aba2fe57/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4c/7ac273957eb44fab07ece40ca75186/aih-tih-sc-150e73-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b3/7a9e1b70796868353bea5a02b973c2/aih-tih-sc-150e73-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
AGO2--TRAPPC9
starfusion
arriba
MAL2--DIPK1A
starfusion
LINC00665--WDR62
starfusion
arriba
TTBK2--SH2D3A
starfusion
arriba
TTC6--MIPOL1
starfusion
arriba
WDR92--PPP3R1
starfusion
GPR39--AC010974.2
starfusion
TLK2--AC240565.1
starfusion
ZNF875--ZNF793
starfusion
TLK2P1--AC110079.1
starfusion
CCL28--RN7SL1
starfusion
ACTBP6--ACTB
starfusion
CPNE4--ACP3
arriba
ACP3--ACP3
arriba
PHF8--REPS2
arriba
PHF8--CBX1P4
arriba
TVP23C--CDRT4
arriba
KLRC4--KLRK1
arriba
CERS6--ABCB11
arriba
CERS6--DHRS9
arriba

  0%|          | 0/20 [00:00<?, ?it/s]
Processing AGO2--TRAPPC9:   0%|          | 0/20 [00:00<?, ?it/s]
Processing AGO2--TRAPPC9:   5%|▌         | 1/20 [00:00<00:02,  9.26it/s]
Processing MAL2--DIPK1A:   5%|▌         | 1/20 [00:00<00:02,  9.26it/s] 
Processing MAL2--DIPK1A:  10%|█         | 2/20 [00:00<00:01,  9.49it/s]
Processing LINC00665--WDR62:  10%|█         | 2/20 [00:00<00:01,  9.49it/s]
Processing LINC00665--WDR62:  15%|█▌        | 3/20 [00:00<00:01,  9.57it/s]
Processing TTBK2--SH2D3A:  15%|█▌        | 3/20 [00:00<00:01,  9.57it/s]   
Processing TTBK2--SH2D3A:  20%|██        | 4/20 [00:00<00:01,  9.60it/s]
Processing TTC6--MIPOL1:  20%|██        | 4/20 [00:00<00:01,  9.60it/s] 
Processing TTC6--MIPOL1:  25%|██▌       | 5/20 [00:00<00:01,  9.62it/s]
Processing WDR92--PPP3R1:  25%|██▌       | 5/20 [00:00<00:01,  9.62it/s]
Processing WDR92--PPP3R1:  30%|███       | 6/20 [00:00<00:01,  9.64it/s]
Processing GPR39--AC010974.2:  30%|███       | 6/20 [00:00<00:01,  9.64it/s]
Processing GPR39--AC010974.2:  35%|███▌      | 7/20 [00:00<00:01,  9.64it/s]
Processing TLK2--AC240565.1:  35%|███▌      | 7/20 [00:00<00:01,  9.64it/s] 
Processing TLK2--AC240565.1:  40%|████      | 8/20 [00:00<00:01,  9.65it/s]
Processing ZNF875--ZNF793:  40%|████      | 8/20 [00:00<00:01,  9.65it/s]  
Processing ZNF875--ZNF793:  45%|████▌     | 9/20 [00:00<00:01,  9.65it/s]
Processing TLK2P1--AC110079.1:  45%|████▌     | 9/20 [00:00<00:01,  9.65it/s]
Processing TLK2P1--AC110079.1:  50%|█████     | 10/20 [00:01<00:01,  9.65it/s]
Processing CCL28--RN7SL1:  50%|█████     | 10/20 [00:01<00:01,  9.65it/s]     
Processing CCL28--RN7SL1:  55%|█████▌    | 11/20 [00:01<00:00,  9.66it/s]
Processing ACTBP6--ACTB:  55%|█████▌    | 11/20 [00:01<00:00,  9.66it/s] 
Processing ACTBP6--ACTB:  60%|██████    | 12/20 [00:01<00:00,  9.66it/s]
Processing CPNE4--ACP3:  60%|██████    | 12/20 [00:01<00:00,  9.66it/s] 
Processing CPNE4--ACP3:  65%|██████▌   | 13/20 [00:01<00:00,  9.66it/s]
Processing ACP3--ACP3:  65%|██████▌   | 13/20 [00:01<00:00,  9.66it/s] 
Processing ACP3--ACP3:  70%|███████   | 14/20 [00:01<00:00,  9.66it/s]
Processing PHF8--REPS2:  70%|███████   | 14/20 [00:01<00:00,  9.66it/s]
Processing PHF8--REPS2:  75%|███████▌  | 15/20 [00:01<00:00,  9.66it/s]
Processing PHF8--CBX1P4:  75%|███████▌  | 15/20 [00:01<00:00,  9.66it/s]
Processing PHF8--CBX1P4:  80%|████████  | 16/20 [00:01<00:00,  9.66it/s]
Processing TVP23C--CDRT4:  80%|████████  | 16/20 [00:01<00:00,  9.66it/s]
Processing TVP23C--CDRT4:  85%|████████▌ | 17/20 [00:01<00:00,  9.66it/s]
Processing KLRC4--KLRK1:  85%|████████▌ | 17/20 [00:01<00:00,  9.66it/s] 
Processing KLRC4--KLRK1:  90%|█████████ | 18/20 [00:01<00:00,  9.66it/s]
Processing CERS6--ABCB11:  90%|█████████ | 18/20 [00:01<00:00,  9.66it/s]
Processing CERS6--ABCB11:  95%|█████████▌| 19/20 [00:01<00:00,  9.66it/s]
Processing CERS6--DHRS9:  95%|█████████▌| 19/20 [00:01<00:00,  9.66it/s] 
Processing CERS6--DHRS9: 100%|██████████| 20/20 [00:02<00:00,  9.66it/s]
Processing CERS6--DHRS9: 100%|██████████| 20/20 [00:02<00:00,  9.64it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory