File Info
- Filename
- aih-tih-sc-150e73-R1_A23YTGFLT4_1.fusions.csv
- Full Path
- s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/d511a1ff2b50805cb6b298aba2fe57/aih-tih-sc-150e73-R1_A23YTGFLT4_1.fusions.csv
- Size
- 4.5 KB
- Task
- NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-150e73-R1_A23YTGFLT4_1)
- Attempt
Content
View in new tab| Fusion | Databases | Score | Explained score | arriba | starfusion |
| AGO2--TRAPPC9 | Mitelman,FusionGDB2 | 0.375 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.000) | position: chr8:140557089#chr8:140439197,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 59,split_reads2: 203,discordant_mates: 1,coverage1: 1528,coverage2: 3217,confidence: high | position: chr8:140557089:-#chr8:140439197:-,junction_reads: 147,spanning_reads: 1,ffmp: 0.5007 |
| MAL2--DIPK1A | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr8:119208604:+#chr1:92833034:-,junction_reads: 32,spanning_reads: 0,ffmp: 0.1083 | ||
| LINC00665--WDR62 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr19:36315957#chr19:36081433,reading-frame: .,type: inversion,split_reads1: 4,split_reads2: 22,discordant_mates: 1,coverage1: 6,coverage2: 711,confidence: high | position: chr19:36315957:-#chr19:36081433:+,junction_reads: 28,spanning_reads: 0,ffmp: 0.0947 | |
| TTBK2--SH2D3A | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr15:42872611#chr19:6763816,reading-frame: out-of-frame,type: translocation,split_reads1: 4,split_reads2: 17,discordant_mates: 0,coverage1: 221,coverage2: 1355,confidence: high | position: chr15:42872611:-#chr19:6763816:-,junction_reads: 25,spanning_reads: 0,ffmp: 0.0846 | |
| TTC6--MIPOL1 | Mitelman,FusionGDB2 | 0.375 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.000) | position: chr14:37623003#chr14:37546905,reading-frame: out-of-frame,type: duplication,split_reads1: 10,split_reads2: 9,discordant_mates: 0,coverage1: 156,coverage2: 523,confidence: high | position: chr14:37623003:+#chr14:37546905:+,junction_reads: 19,spanning_reads: 0,ffmp: 0.0643 |
| WDR92--PPP3R1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr2:68134702:-#chr2:68188690:-,junction_reads: 17,spanning_reads: 1,ffmp: 0.0596 | ||
| GPR39--AC010974.2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr2:132417898:+#chr2:132816482:+,junction_reads: 15,spanning_reads: 0,ffmp: 0.0507 | ||
| TLK2--AC240565.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:62560126:+#chr17:106864:-,junction_reads: 15,spanning_reads: 1,ffmp: 0.0244 | ||
| ZNF875--ZNF793 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr19:37347872:+#chr19:37508265:+,junction_reads: 12,spanning_reads: 0,ffmp: 0.0406 | ||
| TLK2P1--AC110079.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:34039043:-#chr4:118595912:+,junction_reads: 11,spanning_reads: 0,ffmp: 0.0309 | ||
| CCL28--RN7SL1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:43380608:-#chr14:49586653:+,junction_reads: 10,spanning_reads: 1,ffmp: 0.0325 | ||
| ACTBP6--ACTB | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr8:84948968:+#chr7:5528696:-,junction_reads: 8,spanning_reads: 0,ffmp: 0.0271 | ||
| CPNE4--ACP3 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr3:132295699#chr3:132328267,reading-frame: .,type: deletion/read-through,split_reads1: 52,split_reads2: 117,discordant_mates: 0,coverage1: 260,coverage2: 725,confidence: high | ||
| ACP3--ACP3 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr3:132295699#chr3:132328267,reading-frame: .,type: deletion/read-through,split_reads1: 52,split_reads2: 117,discordant_mates: 0,coverage1: 260,coverage2: 725,confidence: high | ||
| PHF8--REPS2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chrX:53962844#chrX:17211458,reading-frame: out-of-frame,type: deletion,split_reads1: 84,split_reads2: 6,discordant_mates: 0,coverage1: 1211,coverage2: 10,confidence: high | ||
| PHF8--CBX1P4 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chrX:53962844#chrX:17211458,reading-frame: out-of-frame,type: deletion,split_reads1: 84,split_reads2: 6,discordant_mates: 0,coverage1: 1211,coverage2: 10,confidence: high | ||
| TVP23C--CDRT4 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr17:15503098#chr17:15440285,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 28,split_reads2: 23,discordant_mates: 0,coverage1: 537,coverage2: 202,confidence: high | |
| KLRC4--KLRK1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr12:10407636#chr12:10388875,reading-frame: stop-codon,type: deletion/read-through,split_reads1: 7,split_reads2: 10,discordant_mates: 0,coverage1: 125,coverage2: 265,confidence: high | ||
| CERS6--ABCB11 | Mitelman,FusionGDB2 | 0.312 | 0.5 * (0.125) + 0.5 * (0.500 + 0.000) | position: chr2:168631042#chr2:169043262,reading-frame: out-of-frame,type: deletion,split_reads1: 9,split_reads2: 2,discordant_mates: 0,coverage1: 1047,coverage2: 29,confidence: high | |
| CERS6--DHRS9 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr2:168631042#chr2:169043262,reading-frame: out-of-frame,type: deletion,split_reads1: 9,split_reads2: 2,discordant_mates: 0,coverage1: 1047,coverage2: 29,confidence: high |
21 rows