Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/a085fbd289e2e08075078f1660e007/aih-tih-sc-13d441-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/037916a05a11ac23e2b1951d2bc12c/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/037916a05a11ac23e2b1951d2bc12c/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
Processed 1000000 records
Processed 2000000 records
Processed 3000000 records
Processed 4000000 records
Processed 5000000 records
Processed 6000000 records
Processed 7000000 records
Processed 8000000 records
Processed 9000000 records
Processed 10000000 records
Processed 11000000 records
Processed 12000000 records
Processed 13000000 records
Processed 14000000 records
Processed 15000000 records
Processed 16000000 records
Processed 17000000 records
Processed 18000000 records
Processed 19000000 records
Processed 20000000 records
Processed 21000000 records
Processed 22000000 records
Processed 23000000 records
Processed 24000000 records
Processed 25000000 records
Processed 26000000 records
Processed 27000000 records
Processed 28000000 records
Processed 29000000 records
Processed 30000000 records
Processed 31000000 records
Processed 32000000 records
Processed 33000000 records
Processed 34000000 records
Processed 35000000 records
Processed 36000000 records
Processed 37000000 records
Processed 38000000 records
Processed 39000000 records
Processed 40000000 records
Processed 41000000 records
Processed 42000000 records
Processed 43000000 records
Processed 44000000 records
Processed 45000000 records
Processed 46000000 records
Processed 47000000 records
Processed 48000000 records
Processed 49000000 records
Processed 50000000 records
Processed 51000000 records
Processed 52000000 records
Processed 53000000 records
Processed 54000000 records
Processed 55000000 records
Processed 56000000 records
Processed 57000000 records
Processed 58000000 records
Processed 59000000 records
Processed 60000000 records
Processed 61000000 records
Processed 62000000 records
Processed 63000000 records
Processed 64000000 records
Processed 65000000 records
Processed 66000000 records
Processed 67000000 records
Processed 68000000 records
Processed 69000000 records
Processed 70000000 records
Processed 71000000 records
Processed 72000000 records
Processed 73000000 records
Processed 74000000 records
Processed 75000000 records
Processed 76000000 records
Processed 77000000 records
Processed 78000000 records
Processed 79000000 records
Processed 80000000 records
Processed 81000000 records
Processed 82000000 records
Processed 83000000 records
Processed 84000000 records
Processed 85000000 records
Processed 86000000 records
Processed 87000000 records
Processed 88000000 records
Processed 89000000 records
Processed 90000000 records
Processed 91000000 records
Processed 92000000 records
Processed 93000000 records
Processed 94000000 records
Processed 95000000 records
Processed 96000000 records
Processed 97000000 records
Processed 98000000 records
Processed 99000000 records
Processed 100000000 records
Processed 101000000 records
Processed 102000000 records
Processed 103000000 records
Processed 104000000 records
Processed 105000000 records
Processed 106000000 records
Processed 107000000 records
Processed 108000000 records
Processed 109000000 records
Processed 110000000 records
Processed 111000000 records
Processed 112000000 records
Processed 113000000 records
Processed 114000000 records
Processed 115000000 records
Processed 116000000 records
Processed 117000000 records
Processed 118000000 records
Processed 119000000 records
Processed 120000000 records
Processed 121000000 records
Processed 122000000 records
Processed 123000000 records
Processed 124000000 records
Processed 125000000 records
Processed 126000000 records
Processed 127000000 records
Processed 128000000 records
Processed 129000000 records
Processed 130000000 records
Processed 131000000 records
Processed 132000000 records
Processed 133000000 records
Processed 134000000 records
Processed 135000000 records
Processed 136000000 records
Processed 137000000 records
Processed 138000000 records
Processed 139000000 records
Processed 140000000 records
Processed 141000000 records
Processed 142000000 records
Processed 143000000 records
Processed 144000000 records
Processed 145000000 records
Processed 146000000 records
Processed 147000000 records
Processed 148000000 records
Processed 149000000 records
Processed 150000000 records
Processed 151000000 records
Processed 152000000 records
Processed 153000000 records
Processed 154000000 records
Processed 155000000 records
Processed 156000000 records
Processed 157000000 records
Processed 158000000 records
Processed 159000000 records
Processed 160000000 records
Processed 161000000 records
Processed 162000000 records
Processed 163000000 records
Processed 164000000 records
Processed 165000000 records
Processed 166000000 records
Processed 167000000 records
Processed 168000000 records
Processed 169000000 records
Processed 170000000 records
Processed 171000000 records
Processed 172000000 records
Processed 173000000 records
Processed 174000000 records
Processed 175000000 records
Processed 176000000 records
Processed 177000000 records
Processed 178000000 records
Processed 179000000 records
Processed 180000000 records
Processed 181000000 records
Processed 182000000 records
Processed 183000000 records
Processed 184000000 records
Processed 185000000 records
Processed 186000000 records
Processed 187000000 records
Processed 188000000 records
Processed 189000000 records
Processed 190000000 records
Processed 191000000 records
Processed 192000000 records
Processed 193000000 records
Processed 194000000 records
Processed 195000000 records
Processed 196000000 records
Processed 197000000 records
Processed 198000000 records
Processed 199000000 records
Processed 200000000 records
Processed 201000000 records
Processed 202000000 records
Processed 203000000 records
Processed 204000000 records
Processed 205000000 records
Processed 206000000 records
Processed 207000000 records
Processed 208000000 records
Processed 209000000 records
Processed 210000000 records
Processed 211000000 records
Processed 212000000 records
Processed 213000000 records
Processed 214000000 records
Processed 215000000 records
Processed 216000000 records
Processed 217000000 records
Processed 218000000 records
Processed 219000000 records
Processed 220000000 records
Processed 221000000 records
Processed 222000000 records
Processed 223000000 records
Processed 224000000 records
Processed 225000000 records
Processed 226000000 records
Processed 227000000 records
Processed 228000000 records
Processed 229000000 records
Processed 230000000 records
Processed 231000000 records
Processed 232000000 records
Processed 233000000 records
Processed 234000000 records
Processed 235000000 records
Processed 236000000 records
Processed 237000000 records
Processed 238000000 records
Processed 239000000 records
Processed 240000000 records
Processed 241000000 records
Processed 242000000 records
Processed 243000000 records
Processed 244000000 records
Processed 245000000 records
Processed 246000000 records
Processed 247000000 records
Processed 248000000 records
Processed 249000000 records
Processed 250000000 records
Processed 251000000 records
Processed 252000000 records
Processed 253000000 records
Processed 254000000 records
Processed 255000000 records
Processed 256000000 records
Processed 257000000 records
Processed 258000000 records
Processed 259000000 records
Processed 260000000 records
Processed 261000000 records
Processed 262000000 records
Processed 263000000 records
Processed 264000000 records
Processed 265000000 records
Processed 266000000 records
Processed 267000000 records
Processed 268000000 records
Processed 269000000 records
Processed 270000000 records
Processed 271000000 records
Processed 272000000 records
Processed 273000000 records
Processed 274000000 records
Processed 275000000 records
Processed 276000000 records
Processed 277000000 records
Processed 278000000 records
Processed 279000000 records
Processed 280000000 records
Processed 281000000 records
Processed 282000000 records
Processed 283000000 records
Processed 284000000 records
Processed 285000000 records
Processed 286000000 records
Processed 287000000 records
Processed 288000000 records
Processed 289000000 records
Processed 290000000 records
Processed 291000000 records
Processed 292000000 records
Processed 293000000 records
Processed 294000000 records
Processed 295000000 records
Processed 296000000 records
Processed 297000000 records
Processed 298000000 records
Processed 299000000 records
Processed 300000000 records
Processed 301000000 records
Processed 302000000 records
Processed 303000000 records
Processed 304000000 records
Processed 305000000 records
Processed 306000000 records
Processed 307000000 records
Processed 308000000 records
Processed 309000000 records
Processed 310000000 records
Processed 311000000 records
Processed 312000000 records
Processed 313000000 records
Processed 314000000 records
Processed 315000000 records
Processed 316000000 records
Processed 317000000 records
Processed 318000000 records
Processed 319000000 records
Processed 320000000 records
Processed 321000000 records
Processed 322000000 records
Processed 323000000 records
Processed 324000000 records
Processed 325000000 records
Processed 326000000 records
Processed 327000000 records
Processed 328000000 records
Processed 329000000 records
Processed 330000000 records
Processed 331000000 records
Processed 332000000 records
Processed 333000000 records
Processed 334000000 records
Processed 335000000 records
Processed 336000000 records
Processed 337000000 records
Processed 338000000 records
Processed 339000000 records
Processed 340000000 records
Processed 341000000 records
Processed 342000000 records
Processed 343000000 records
Processed 344000000 records
Processed 345000000 records
Processed 346000000 records
Processed 347000000 records
Processed 348000000 records
Processed 349000000 records
Processed 350000000 records
Processed 351000000 records
Processed 352000000 records
Processed 353000000 records
Processed 354000000 records
Processed 355000000 records
Processed 356000000 records
Processed 357000000 records
Processed 358000000 records
Processed 359000000 records
Processed 360000000 records
Processed 361000000 records
Processed 362000000 records
Processed 363000000 records
Processed 364000000 records
Processed 365000000 records
Processed 366000000 records
Processed 367000000 records
Processed 368000000 records
Processed 369000000 records
Processed 370000000 records
Processed 371000000 records
Processed 372000000 records
Processed 373000000 records
Processed 374000000 records
Processed 375000000 records
Processed 376000000 records
Processed 377000000 records
Processed 378000000 records
Processed 379000000 records
Processed 380000000 records
Processed 381000000 records
Processed 382000000 records
Processed 383000000 records
Processed 384000000 records
Processed 385000000 records
Processed 386000000 records
Processed 387000000 records
Processed 388000000 records
Processed 389000000 records
Processed 390000000 records
Processed 391000000 records
Processed 392000000 records
Processed 393000000 records
Processed 394000000 records
Processed 395000000 records
Processed 396000000 records
Processed 397000000 records
Processed 398000000 records
Processed 399000000 records
Processed 400000000 records
Processed 401000000 records
Processed 402000000 records
Processed 403000000 records
Processed 404000000 records
Processed 405000000 records
Processed 406000000 records
Processed 407000000 records
Processed 408000000 records
Processed 409000000 records
Processed 410000000 records
Processed 411000000 records
Processed 412000000 records
Processed 413000000 records
Processed 414000000 records
Processed 415000000 records
Processed 416000000 records
Processed 417000000 records
Processed 418000000 records
Processed 419000000 records
Processed 420000000 records
Processed 421000000 records
Processed 422000000 records
Processed 423000000 records
Processed 424000000 records
Processed 425000000 records
Processed 426000000 records
Processed 427000000 records
Processed 428000000 records
Processed 429000000 records
Processed 430000000 records
Processed 431000000 records
Processed 432000000 records
Processed 433000000 records
Processed 434000000 records
Processed 435000000 records
Processed 436000000 records
Processed 437000000 records
Processed 438000000 records
Processed 439000000 records
Processed 440000000 records
Processed 441000000 records
Processed 442000000 records
Processed 443000000 records
Processed 444000000 records
Processed 445000000 records
Processed 446000000 records
Processed 447000000 records
Processed 448000000 records
Processed 449000000 records
Processed 450000000 records
Processed 451000000 records
Processed 452000000 records
Processed 453000000 records
Processed 454000000 records
Processed 455000000 records
Processed 456000000 records
Processed 457000000 records
Processed 458000000 records
Processed 459000000 records
Processed 460000000 records
Processed 461000000 records
Processed 462000000 records
Processed 463000000 records
Processed 464000000 records
Processed 465000000 records
Processed 466000000 records
Processed 467000000 records
Processed 468000000 records
Processed 469000000 records
Processed 470000000 records
Processed 471000000 records
Processed 472000000 records
Processed 473000000 records
Processed 474000000 records
Processed 475000000 records
Processed 476000000 records
Processed 477000000 records
Processed 478000000 records
Processed 479000000 records
Processed 480000000 records
Processed 481000000 records
Processed 482000000 records
Processed 483000000 records
Processed 484000000 records
Processed 485000000 records
Processed 486000000 records
Processed 487000000 records
Processed 488000000 records
Processed 489000000 records
Processed 490000000 records
Processed 491000000 records
Processed 492000000 records
Processed 493000000 records
Processed 494000000 records
Processed 495000000 records
Processed 496000000 records
Processed 497000000 records
Processed 498000000 records
Processed 499000000 records
Processed 500000000 records
Processed 501000000 records
Processed 502000000 records
Processed 503000000 records
Processed 504000000 records
Processed 505000000 records
Processed 506000000 records
Processed 507000000 records
Processed 508000000 records
Processed 509000000 records
Processed 510000000 records
Processed 511000000 records
Processed 512000000 records
Processed 513000000 records
Processed 514000000 records
paired = 255600443
unpaired = 3598764
MERGED PAIRED END READS = 255600443
MATES PROCESSED = 514799650
TOTAL READS     = 259199207
DISTINCT READS  = 1.28629e+08
DISTINCT COUNTS = 992
MAX COUNT       = 565312
COUNTS OF 1     = 7.32291e+07
MAX TERMS       = 100
OBSERVED COUNTS (565313)
1	73229086
2	29421450
3	12585534
4	5748207
5	2845774
6	1533796
7	898613
8	566565
9	380393
10	267664
11	196508
12	147844
13	115095
14	91075
15	73731
16	60451
17	50179
18	42268
19	36108
20	30657
21	26616
22	23033
23	20050
24	17638
25	15707
26	14000
27	12658
28	11411
29	10100
30	9313
31	8384
32	7775
33	7051
34	6500
35	5993
36	5423
37	5049
38	4629
39	4308
40	4127
41	3812
42	3652
43	3292
44	3058
45	2958
46	2702
47	2594
48	2438
49	2306
50	2122
51	1972
52	2004
53	1786
54	1794
55	1649
56	1604
57	1446
58	1416
59	1370
60	1316
61	1172
62	1225
63	1117
64	1028
65	1012
66	1017
67	959
68	939
69	870
70	789
71	824
72	753
73	712
74	710
75	734
76	680
77	688
78	648
79	565
80	608
81	565
82	563
83	514
84	495
85	472
86	474
87	445
88	430
89	438
90	402
91	392
92	377
93	353
94	374
95	345
96	336
97	319
98	336
99	324
100	316
101	314
102	321
103	268
104	260
105	281
106	270
107	265
108	252
109	268
110	256
111	225
112	193
113	236
114	216
115	204
116	221
117	198
118	209
119	154
120	210
121	176
122	191
123	182
124	178
125	187
126	143
127	157
128	172
129	150
130	165
131	137
132	131
133	139
134	153
135	138
136	130
137	119
138	114
139	111
140	125
141	117
142	107
143	115
144	116
145	129
146	94
147	100
148	116
149	109
150	122
151	109
152	90
153	89
154	99
155	76
156	85
157	90
158	94
159	100
160	76
161	68
162	98
163	88
164	81
165	60
166	54
167	69
168	74
169	78
170	85
171	72
172	79
173	74
174	59
175	63
176	70
177	81
178	76
179	56
180	60
181	66
182	53
183	60
184	74
185	50
186	56
187	51
188	52
189	57
190	60
191	47
192	52
193	41
194	47
195	63
196	46
197	39
198	46
199	39
200	48
201	38
202	44
203	46
204	48
205	28
206	34
207	47
208	21
209	47
210	46
211	36
212	40
213	39
214	42
215	34
216	38
217	35
218	36
219	29
220	35
221	31
222	35
223	30
224	31
225	43
226	33
227	42
228	27
229	33
230	30
231	23
232	38
233	29
234	33
235	29
236	27
237	28
238	35
239	31
240	27
241	30
242	22
243	28
244	16
245	19
246	17
247	29
248	22
249	38
250	20
251	21
252	21
253	22
254	17
255	19
256	22
257	18
258	23
259	26
260	18
261	18
262	19
263	21
264	22
265	27
266	20
267	13
268	23
269	21
270	17
271	10
272	22
273	11
274	25
275	19
276	32
277	20
278	14
279	27
280	9
281	23
282	18
283	19
284	17
285	21
286	26
287	21
288	14
289	13
290	10
291	17
292	14
293	15
294	20
295	14
296	21
297	14
298	13
299	13
300	15
301	19
302	14
303	15
304	14
305	13
306	14
307	9
308	19
309	11
310	7
311	13
312	23
313	20
314	12
315	13
316	15
317	15
318	12
319	17
320	8
321	10
322	17
323	19
324	18
325	15
326	12
327	10
328	14
329	13
330	9
331	12
332	8
333	12
334	5
335	12
336	12
337	8
338	14
339	9
340	8
341	14
342	12
343	13
344	17
345	9
346	15
347	10
348	14
349	8
350	5
351	8
352	10
353	7
354	8
355	14
356	11
357	9
358	7
359	5
360	9
361	10
362	13
363	9
364	4
365	11
366	11
367	5
368	10
369	9
370	6
371	8
372	8
373	10
374	5
375	5
376	6
377	14
378	7
379	5
380	6
381	5
382	6
383	5
384	7
385	10
386	3
387	8
388	3
389	5
390	8
391	9
392	10
393	8
394	4
395	9
396	4
397	7
398	8
399	7
400	9
401	5
402	5
403	9
404	6
405	5
406	9
407	6
408	7
409	2
410	3
411	3
412	1
413	4
414	5
415	5
416	6
417	7
418	6
419	7
420	6
421	2
422	8
423	8
424	5
425	5
426	3
427	8
428	5
429	8
430	6
431	5
432	3
433	5
434	4
435	4
436	7
437	9
438	5
439	9
440	2
441	13
442	8
443	3
444	2
445	4
446	4
447	5
448	5
449	5
450	3
451	6
452	6
453	3
454	4
455	3
456	8
457	2
458	10
459	4
460	6
461	3
462	5
463	4
464	7
465	4
466	3
467	2
468	6
469	11
470	8
471	4
472	6
473	9
474	5
475	3
476	3
477	4
478	4
479	4
480	2
481	2
482	3
483	8
484	3
485	2
486	5
487	5
488	6
489	6
490	4
491	2
492	8
493	4
494	2
495	2
496	2
497	2
498	7
499	3
500	4
501	4
502	4
503	5
504	3
505	4
506	1
507	3
508	2
509	2
510	6
511	4
512	1
513	1
514	2
515	2
516	3
517	4
518	4
519	4
520	2
521	1
522	3
523	2
524	4
525	2
526	4
527	1
528	3
529	4
530	3
531	6
532	2
533	1
534	3
535	1
536	2
537	3
538	1
539	5
540	4
541	5
542	4
543	1
544	3
545	1
546	2
547	5
548	4
549	1
550	2
551	2
552	1
553	2
554	2
555	5
556	4
557	3
558	4
559	1
560	4
561	2
562	2
564	3
565	3
566	2
567	3
568	3
569	1
570	3
571	2
572	5
573	4
575	2
576	3
577	5
578	1
579	4
580	3
581	5
582	2
583	2
585	2
586	2
587	2
588	1
589	5
590	1
592	2
594	4
595	1
596	3
597	1
598	1
599	3
600	2
601	2
602	4
604	1
605	1
606	1
607	4
609	2
610	1
612	3
613	2
615	1
616	1
617	2
618	1
619	4
621	3
622	1
623	5
624	1
625	2
626	1
627	1
629	6
630	3
631	1
633	3
634	3
635	3
636	3
638	1
639	2
640	2
641	1
642	1
643	3
644	1
645	3
647	2
649	2
650	2
651	1
652	6
653	4
654	2
656	4
657	4
658	1
659	4
660	2
661	5
662	3
664	1
665	4
666	1
667	1
668	2
669	1
670	2
671	2
672	5
673	1
674	2
676	1
677	3
678	1
679	1
680	2
681	1
683	1
684	3
685	2
686	2
687	1
688	1
689	1
691	1
692	7
693	2
694	1
695	1
699	1
700	1
701	1
702	1
704	2
705	2
706	3
707	3
709	1
710	4
712	1
713	1
714	3
716	1
717	2
718	1
721	1
722	3
725	2
727	2
728	2
729	1
730	2
732	5
733	1
736	2
738	2
739	1
741	1
743	3
745	2
746	1
747	1
748	1
749	3
751	1
752	1
754	2
756	1
757	1
758	3
760	3
761	1
763	1
764	1
765	1
766	1
767	1
768	2
769	2
770	1
771	1
772	1
775	2
779	2
780	1
782	1
783	1
786	1
787	1
788	2
789	1
790	2
793	4
794	2
797	1
798	1
799	1
801	1
802	2
803	2
804	3
806	1
807	2
808	1
809	1
810	1
811	2
813	1
816	1
817	1
819	2
822	2
825	2
826	1
827	3
831	1
832	1
833	3
839	1
840	2
843	1
844	1
845	1
847	1
849	2
851	1
855	1
857	2
861	1
863	1
867	1
869	1
872	1
875	1
878	3
880	1
881	1
884	1
885	1
889	2
893	1
894	1
896	2
898	1
901	2
902	1
904	2
905	2
912	1
914	3
915	1
916	2
917	2
922	1
924	1
927	1
930	1
931	1
934	1
935	2
936	1
937	1
939	2
940	1
943	1
944	1
945	2
947	1
950	2
951	1
952	1
954	1
956	1
959	2
960	1
963	1
964	1
967	1
968	1
970	1
971	1
974	1
975	2
977	1
978	1
980	1
985	1
990	1
996	1
998	1
1001	1
1003	1
1005	1
1006	1
1007	2
1010	1
1014	1
1016	1
1023	2
1024	1
1025	3
1027	1
1033	1
1048	1
1050	1
1051	1
1052	1
1055	1
1062	1
1064	1
1067	1
1085	1
1088	1
1093	2
1094	1
1095	1
1102	1
1103	2
1108	1
1109	1
1110	1
1123	1
1135	1
1139	1
1141	1
1143	1
1150	1
1154	1
1158	2
1161	1
1164	1
1165	1
1169	1
1180	1
1181	1
1186	1
1190	1
1192	1
1198	1
1202	1
1204	2
1223	1
1225	1
1231	2
1235	1
1237	1
1238	1
1240	1
1247	1
1252	1
1254	1
1260	1
1264	2
1274	1
1287	1
1295	1
1303	1
1320	1
1321	1
1323	1
1329	1
1334	1
1341	1
1342	1
1346	1
1368	1
1377	1
1382	1
1390	1
1400	1
1403	1
1411	1
1423	1
1424	1
1441	2
1448	1
1459	1
1462	1
1488	1
1489	1
1491	1
1495	1
1507	1
1513	1
1532	2
1563	1
1596	1
1605	1
1607	2
1633	1
1641	1
1642	1
1656	1
1659	1
1661	1
1671	1
1681	1
1723	1
1725	1
1775	1
1781	1
1783	1
1851	2
1861	1
1869	1
1875	1
1885	1
1903	1
1906	1
1913	1
1927	1
1940	1
1946	1
1949	1
1956	1
1961	1
1985	1
1995	1
2033	1
2108	1
2114	1
2177	1
2312	1
2341	1
2396	1
2490	1
2492	1
2515	1
2518	1
2730	1
2879	1
3018	1
3076	1
3121	1
3498	1
3668	1
3868	1
4463	1
5037	1
5790	1
6613	1
7686	1
8959	1
9807	1
31170	1
565312	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
......._...._._......__..._._......__._..__.__.__........._.._._........
..._.__.....__...._...___...._.___..__.........___............__.____..
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]