Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/4c4855368867e4d7353aa2d29fae99/aih-tih-sc-656590-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3d/ae5b9b812a62953f9f5b0c861dbc74/aih-tih-sc-656590-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/3c8d62dc6d65d71fe07b3391a2e13d/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d8/5e351656d8dcf1d5bd3d7ec45a6172/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d8/5e351656d8dcf1d5bd3d7ec45a6172/.command.run
==> STAGING COMPLETE (5 inputs)

processing ref_annot.bed ... Done
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-656590-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
processing aih-tih-sc-656590-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam ... Finished