Error, chr discrepancy in gtf info for chr20 ENSEMBL exon 29297095 29297246 . - . gene_id "5_8S_rRNA^ENSG00000283568.1"; transcript_id "ENST00000637374.1"; gene_type "rRNA"; gene_name "5_8S_rRNA"; transcript_type "rRNA"; transcript_name "5_8S_rRNA.9-201"; exon_number 1; exon_id "ENSE00003799614.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "5_8S_rRNA^ENSG00000283568.1"; orig_coord_info "chr20,29297095,29297246,-"; Error, chr discrepancy in gtf info for chr20 ENSEMBL exon 29741510 29741661 . - . gene_id "5_8S_rRNA^ENSG00000283291.1"; transcript_id "ENST00000638132.1"; gene_type "rRNA"; gene_name "5_8S_rRNA"; transcript_type "rRNA"; transcript_name "5_8S_rRNA.8-201"; exon_number 1; exon_id "ENSE00003794628.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "5_8S_rRNA^ENSG00000283291.1"; orig_coord_info "chr20,29741510,29741661,-"; Error, chr discrepancy in gtf info for chr20 ENSEMBL exon 30484925 30485076 . - . gene_id "5_8S_rRNA^ENSG00000275877.1"; transcript_id "ENST00000614365.1"; gene_type "rRNA"; gene_name "5_8S_rRNA"; transcript_type "rRNA"; transcript_name "5_8S_rRNA.3-201"; exon_number 1; exon_id "ENSE00003742842.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "5_8S_rRNA^ENSG00000275877.1"; orig_coord_info "chr20,30484925,30485076,-"; Error, chr discrepancy in gtf info for chr21 ENSEMBL exon 8256781 8256933 . + . gene_id "5_8S_rRNA^ENSG00000277739.1"; transcript_id "ENST00000610460.1"; gene_type "rRNA"; gene_name "5_8S_rRNA"; transcript_type "rRNA"; transcript_name "5_8S_rRNA.5-201"; exon_number 1; exon_id "ENSE00003746458.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "5_8S_rRNA^ENSG00000277739.1"; orig_coord_info "chr21,8256781,8256933,+"; Error, chr discrepancy in gtf info for chr22 ENSEMBL exon 11249809 11249959 . - . gene_id "5_8S_rRNA^ENSG00000276871.1"; transcript_id "ENST00000612732.1"; gene_type "rRNA"; gene_name "5_8S_rRNA"; transcript_type "rRNA"; transcript_name "5_8S_rRNA.4-201"; exon_number 1; exon_id "ENSE00003735240.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "5_8S_rRNA^ENSG00000276871.1"; orig_coord_info "chr22,11249809,11249959,-"; Done. -parsing GTF file: /tmp/nxf.2o2Rfz1nfN/aih-tih-sc-6d9e6f-R1_A23YTGFLT4_1.gtf * Running CMD: /usr/local/bin/STAR --runThreadN 8 --genomeDir /tmp/nxf.2o2Rfz1nfN/ctat_genome_lib_build_dir/ref_genome.fa.star.idx --outSAMtype BAM SortedByCoordinate --twopassMode None --alignSJDBoverhangMin 10 --genomeSuffixLengthMax 10000 --limitBAMsortRAM 47271261705 --alignInsertionFlush Right --alignMatesGapMax 100000 --alignIntronMax 100000 --outSAMattributes All --readFilesIn /tmp/nxf.2o2Rfz1nfN/aih-tih-sc-6d9e6f-R1_A23YTGFLT4_1_1.fastp.fastq.gz /tmp/nxf.2o2Rfz1nfN/aih-tih-sc-6d9e6f-R1_A23YTGFLT4_1_2.fastp.fastq.gz --genomeFastaFiles /tmp/nxf.2o2Rfz1nfN/fi_workdir/aih-tih-sc-6d9e6f-R1_A23YTGFLT4_1.fa --outSAMfilter KeepAllAddedReferences --sjdbGTFfile /tmp/nxf.2o2Rfz1nfN/fi_workdir/aih-tih-sc-6d9e6f-R1_A23YTGFLT4_1.gtf --alignSJstitchMismatchNmax 5 -1 5 5 --scoreGapNoncan -6 --readFilesCommand 'gunzip -c' * Running CMD: mv Aligned.sortedByCoord.out.bam aih-tih-sc-6d9e6f-R1_A23YTGFLT4_1.star.sortedByCoord.out.bam * Running CMD: samtools index aih-tih-sc-6d9e6f-R1_A23YTGFLT4_1.star.sortedByCoord.out.bam 11:10:31 : INFO : Done. -parsing GTF file: /tmp/nxf.2o2Rfz1nfN/fi_workdir/aih-tih-sc-6d9e6f-R1_A23YTGFLT4_1.gtf -parsing /tmp/nxf.2o2Rfz1nfN/fi_workdir/aih-tih-sc-6d9e6f-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam [10000] [20000] [30000] [40000] [50000] [60000] [70000] [80000] [90000] [100000] [110000] [120000] [130000] [140000] [150000] [160000] [170000] [180000] [190000] [200000] [210000] [220000] [230000] [240000] [250000] [260000] [270000] [280000] [290000] [300000] [310000] [320000] [330000] [340000] [350000] [360000] [370000] [380000] [390000] [400000] [410000] [420000] [430000] [440000] [450000] [460000] [470000] [480000] 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[4540000] [4550000] [4560000] [4570000] [4580000] [4590000] [4600000] [4610000] [4620000] [4630000] [4640000] [4650000] [4660000] -done parsing /tmp/nxf.2o2Rfz1nfN/fi_workdir/aih-tih-sc-6d9e6f-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam. Extracting junction info. junction read elimination tally: $VAR1 = { 'num genes matched < 2' => 90, 'num_hits: 3 != num_counted_on_fusion_contigs 2 ' => 202, 'num_hits: 4 != num_counted_on_fusion_contigs 3 ' => 12, 'low complexity anchor region' => 8, 'excessive soft clipping' => 33751, 'exons hit < 2' => 2, 'small anchor length' => 16, 'num_hits: 4 != num_counted_on_fusion_contigs 2 ' => 52, 'num_hits: 2 != num_counted_on_fusion_contigs 1 ' => 258, 'num_hits: 3 != num_counted_on_fusion_contigs 1 ' => 71, 'seq-similar region overlap' => 304, ' ** passed ** ' => 6748, 'num_hits: 6 != num_counted_on_fusion_contigs 3 ' => 42, 'num_hits: 4 != num_counted_on_fusion_contigs 1 ' => 1, 'per_id < 96' => 17061 }; -writing fusion junction support info. -outputting the spanning read info: /tmp/nxf.2o2Rfz1nfN/fi_workdir/aih-tih-sc-6d9e6f-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam.fusion_spanning_info. - counting read alignments among fusion contigs. [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] -fusion SPANNING read extraction for scaff: AATF--AC243830.2 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] -fusion SPANNING read extraction for scaff: AATF--AC243830.3 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] -fusion SPANNING read extraction for scaff: AC091132.4--AC103810.6 [1000] [2000] [3000] [4000] [5000] -fusion SPANNING read extraction for scaff: AC092807.3--DDAH1 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] -fusion SPANNING read extraction for scaff: AKAP7--PTPRK [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] [90000] -fusion SPANNING read extraction for scaff: AMOTL2--ME1 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] -fusion SPANNING read extraction for scaff: ATXN8OS--KLHL1 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] -fusion SPANNING read extraction for scaff: C1QTNF3--AMACR [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] -fusion SPANNING read extraction for scaff: CACNB1--ADAP2 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] -fusion SPANNING read extraction for scaff: CILK1--AL033504.1 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] [90000] [91000] [92000] [93000] [94000] [95000] [96000] [97000] [98000] [99000] [100000] [101000] [102000] [103000] [104000] [105000] [106000] [107000] [108000] -fusion SPANNING read extraction for scaff: ERBB4--AL020994.1 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] -fusion SPANNING read extraction for scaff: EXT1--AC084114.1 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] -fusion SPANNING read extraction for scaff: EXT1--MED30 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] -fusion SPANNING read extraction for scaff: FBXL20--LRRC37A11P [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] -fusion SPANNING read extraction for scaff: FLACC1--TRAK2 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] -fusion SPANNING read extraction for scaff: FSIP1--AC013652.1 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] -fusion SPANNING read extraction for scaff: KLRC4--KLRK1 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] -fusion SPANNING read extraction for scaff: LINC02693--AATF [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] [90000] [91000] [92000] [93000] [94000] [95000] [96000] [97000] [98000] [99000] [100000] [101000] [102000] [103000] [104000] [105000] [106000] [107000] [108000] [109000] [110000] [111000] [112000] [113000] [114000] [115000] [116000] [117000] [118000] [119000] [120000] [121000] [122000] [123000] [124000] [125000] [126000] [127000] [128000] [129000] [130000] [131000] [132000] [133000] [134000] [135000] [136000] [137000] [138000] [139000] [140000] [141000] [142000] [143000] [144000] [145000] [146000] [147000] [148000] [149000] [150000] [151000] [152000] [153000] [154000] [155000] [156000] [157000] [158000] [159000] [160000] [161000] [162000] [163000] [164000] [165000] [166000] [167000] [168000] [169000] [170000] [171000] [172000] [173000] [174000] [175000] [176000] [177000] [178000] [179000] [180000] [181000] [182000] [183000] [184000] [185000] [186000] [187000] [188000] [189000] [190000] [191000] [192000] [193000] [194000] [195000] [196000] [197000] [198000] [199000] [200000] [201000] [202000] [203000] [204000] [205000] [206000] [207000] [208000] [209000] [210000] [211000] [212000] [213000] [214000] [215000] [216000] [217000] [218000] [219000] [220000] [221000] [222000] [223000] [224000] [225000] [226000] [227000] [228000] [229000] [230000] [231000] [232000] [233000] [234000] [235000] [236000] [237000] [238000] [239000] [240000] [241000] [242000] [243000] [244000] [245000] [246000] [247000] [248000] [249000] [250000] [251000] [252000] [253000] [254000] [255000] [256000] [257000] [258000] [259000] [260000] [261000] [262000] [263000] [264000] [265000] [266000] [267000] [268000] [269000] [270000] [271000] [272000] [273000] [274000] [275000] [276000] [277000] [278000] [279000] [280000] [281000] [282000] [283000] [284000] [285000] [286000] [287000] [288000] [289000] [290000] [291000] [292000] [293000] [294000] [295000] [296000] [297000] [298000] [299000] [300000] [301000] [302000] [303000] [304000] [305000] [306000] [307000] [308000] [309000] [310000] [311000] [312000] [313000] [314000] [315000] [316000] [317000] [318000] [319000] [320000] [321000] [322000] [323000] [324000] [325000] [326000] [327000] [328000] [329000] [330000] [331000] [332000] [333000] [334000] [335000] [336000] [337000] [338000] [339000] [340000] [341000] [342000] [343000] [344000] [345000] [346000] [347000] [348000] [349000] [350000] [351000] [352000] [353000] [354000] [355000] [356000] [357000] [358000] [359000] [360000] [361000] [362000] [363000] [364000] [365000] [366000] [367000] [368000] [369000] [370000] [371000] [372000] [373000] [374000] [375000] [376000] [377000] [378000] [379000] [380000] [381000] [382000] [383000] [384000] [385000] [386000] [387000] [388000] [389000] [390000] [391000] [392000] [393000] [394000] [395000] [396000] [397000] [398000] [399000] [400000] [401000] [402000] [403000] [404000] [405000] [406000] [407000] [408000] [409000] [410000] [411000] [412000] [413000] [414000] [415000] [416000] [417000] [418000] [419000] [420000] [421000] [422000] [423000] [424000] [425000] [426000] [427000] -fusion SPANNING read extraction for scaff: NF1--IKZF3 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] [90000] [91000] [92000] -fusion SPANNING read extraction for scaff: NFKB2--DENND10 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] -fusion SPANNING read extraction for scaff: NPEPPSP1--AC003101.1 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] -fusion SPANNING read extraction for scaff: NPEPPSP1--MIR4725 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] [90000] [91000] [92000] [93000] [94000] [95000] [96000] [97000] [98000] [99000] [100000] [101000] [102000] [103000] [104000] [105000] [106000] [107000] [108000] [109000] [110000] [111000] [112000] [113000] [114000] [115000] [116000] [117000] [118000] [119000] [120000] [121000] [122000] [123000] [124000] [125000] [126000] [127000] [128000] [129000] [130000] [131000] [132000] [133000] [134000] [135000] [136000] [137000] [138000] [139000] [140000] [141000] [142000] [143000] [144000] [145000] [146000] [147000] [148000] [149000] [150000] [151000] [152000] [153000] [154000] [155000] [156000] [157000] [158000] [159000] [160000] [161000] [162000] [163000] [164000] [165000] [166000] [167000] [168000] [169000] [170000] [171000] [172000] [173000] [174000] [175000] [176000] [177000] [178000] [179000] [180000] [181000] [182000] [183000] [184000] [185000] [186000] [187000] [188000] [189000] [190000] [191000] [192000] [193000] [194000] [195000] [196000] [197000] [198000] [199000] [200000] [201000] [202000] [203000] [204000] [205000] [206000] [207000] [208000] [209000] [210000] [211000] [212000] -fusion SPANNING read extraction for scaff: NSD3--5_8S_rRNA [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] [90000] [91000] [92000] [93000] [94000] [95000] [96000] [97000] [98000] [99000] [100000] [101000] [102000] [103000] [104000] [105000] [106000] [107000] [108000] [109000] [110000] [111000] [112000] [113000] [114000] [115000] [116000] [117000] [118000] [119000] [120000] [121000] [122000] [123000] [124000] [125000] [126000] [127000] [128000] [129000] [130000] [131000] [132000] [133000] [134000] [135000] [136000] [137000] [138000] [139000] [140000] [141000] [142000] [143000] [144000] [145000] [146000] [147000] [148000] [149000] [150000] [151000] [152000] [153000] [154000] [155000] [156000] [157000] [158000] [159000] [160000] [161000] [162000] [163000] [164000] [165000] [166000] [167000] [168000] [169000] [170000] [171000] [172000] [173000] [174000] [175000] [176000] [177000] [178000] [179000] [180000] [181000] [182000] [183000] [184000] [185000] [186000] [187000] [188000] [189000] [190000] [191000] [192000] [193000] [194000] [195000] [196000] [197000] [198000] [199000] [200000] [201000] [202000] [203000] [204000] [205000] [206000] [207000] [208000] [209000] [210000] [211000] [212000] -fusion SPANNING read extraction for scaff: NSD3--CR383658.1 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] -fusion SPANNING read extraction for scaff: PAPSS1--HADH [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] -fusion SPANNING read extraction for scaff: PCDHA10--PCDHAC1 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] -fusion SPANNING read extraction for scaff: PCDHA10--PCDHAC2 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] -fusion SPANNING read extraction for scaff: PCDHA10--PCDHA13 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] -fusion SPANNING read extraction for scaff: PCDHA4--PCDHAC1 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] -fusion SPANNING read extraction for scaff: PCDHA4--PCDHAC2 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] -fusion SPANNING read extraction for scaff: PCDHA4--PCDHA13 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] [90000] [91000] [92000] [93000] [94000] [95000] [96000] [97000] [98000] [99000] [100000] [101000] [102000] [103000] [104000] [105000] [106000] [107000] [108000] [109000] [110000] [111000] [112000] [113000] [114000] [115000] [116000] [117000] [118000] [119000] [120000] [121000] [122000] [123000] [124000] [125000] [126000] [127000] [128000] [129000] [130000] [131000] [132000] [133000] [134000] [135000] [136000] [137000] [138000] [139000] [140000] [141000] [142000] [143000] [144000] [145000] [146000] [147000] [148000] [149000] [150000] [151000] [152000] [153000] [154000] [155000] [156000] [157000] [158000] [159000] [160000] [161000] [162000] [163000] [164000] [165000] [166000] [167000] [168000] [169000] [170000] [171000] [172000] [173000] [174000] [175000] [176000] [177000] [178000] [179000] [180000] [181000] [182000] [183000] [184000] [185000] [186000] [187000] [188000] [189000] [190000] [191000] [192000] [193000] [194000] [195000] [196000] [197000] [198000] [199000] [200000] [201000] [202000] [203000] [204000] [205000] [206000] [207000] [208000] [209000] [210000] [211000] [212000] [213000] [214000] [215000] [216000] [217000] [218000] [219000] [220000] [221000] [222000] [223000] [224000] [225000] [226000] [227000] [228000] [229000] [230000] [231000] [232000] [233000] [234000] [235000] [236000] [237000] [238000] [239000] [240000] [241000] [242000] [243000] [244000] [245000] [246000] [247000] [248000] [249000] [250000] [251000] [252000] [253000] [254000] [255000] [256000] [257000] [258000] [259000] [260000] [261000] [262000] [263000] [264000] [265000] [266000] [267000] [268000] [269000] [270000] [271000] [272000] [273000] [274000] [275000] [276000] [277000] [278000] [279000] [280000] [281000] [282000] [283000] [284000] [285000] [286000] [287000] [288000] [289000] [290000] [291000] [292000] [293000] [294000] [295000] [296000] [297000] [298000] [299000] [300000] [301000] [302000] [303000] [304000] [305000] [306000] [307000] [308000] [309000] [310000] [311000] [312000] [313000] [314000] [315000] [316000] [317000] [318000] [319000] [320000] [321000] [322000] [323000] [324000] [325000] [326000] [327000] [328000] [329000] [330000] [331000] [332000] [333000] [334000] [335000] [336000] [337000] [338000] [339000] [340000] [341000] [342000] [343000] [344000] [345000] [346000] [347000] [348000] [349000] [350000] [351000] [352000] [353000] [354000] [355000] [356000] [357000] [358000] [359000] [360000] [361000] [362000] [363000] [364000] [365000] [366000] [367000] [368000] [369000] [370000] [371000] [372000] [373000] [374000] [375000] [376000] [377000] [378000] [379000] [380000] [381000] [382000] [383000] [384000] [385000] [386000] [387000] [388000] [389000] [390000] [391000] [392000] [393000] [394000] [395000] [396000] [397000] [398000] [399000] [400000] [401000] [402000] [403000] [404000] [405000] [406000] [407000] [408000] [409000] [410000] [411000] [412000] [413000] [414000] [415000] [416000] [417000] [418000] [419000] [420000] [421000] [422000] [423000] [424000] -fusion SPANNING read extraction for scaff: PGAP3--MED1 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] [90000] [91000] [92000] [93000] [94000] [95000] [96000] [97000] [98000] [99000] [100000] [101000] [102000] [103000] [104000] [105000] [106000] [107000] [108000] [109000] [110000] [111000] [112000] [113000] [114000] [115000] [116000] [117000] [118000] [119000] [120000] [121000] [122000] [123000] [124000] [125000] [126000] [127000] [128000] -fusion SPANNING read extraction for scaff: PHF12--HSPA4L [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] [90000] [91000] [92000] [93000] [94000] [95000] [96000] [97000] [98000] [99000] [100000] [101000] [102000] [103000] [104000] [105000] [106000] [107000] [108000] [109000] [110000] [111000] [112000] [113000] [114000] [115000] -fusion SPANNING read extraction for scaff: PHF12--LINC02693 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] [90000] [91000] [92000] [93000] [94000] [95000] [96000] [97000] [98000] [99000] [100000] [101000] [102000] [103000] [104000] [105000] [106000] [107000] [108000] [109000] [110000] [111000] [112000] [113000] [114000] [115000] [116000] [117000] [118000] [119000] -fusion SPANNING read extraction for scaff: PHF12--RPL21P120 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] [90000] [91000] [92000] [93000] [94000] [95000] [96000] [97000] [98000] [99000] [100000] [101000] [102000] [103000] [104000] [105000] [106000] [107000] [108000] [109000] [110000] [111000] [112000] [113000] [114000] [115000] [116000] [117000] [118000] [119000] [120000] [121000] [122000] [123000] [124000] [125000] [126000] [127000] [128000] [129000] [130000] [131000] [132000] [133000] [134000] [135000] [136000] [137000] [138000] [139000] [140000] [141000] [142000] [143000] [144000] [145000] [146000] [147000] [148000] [149000] [150000] -fusion SPANNING read extraction for scaff: PREX1--MAP1LC3A [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] -fusion SPANNING read extraction for scaff: PTPRK--TRDN [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] -fusion SPANNING read extraction for scaff: RANBP9--AKAP7 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] -fusion SPANNING read extraction for scaff: RAPGEF5--UNC5D [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] [90000] [91000] [92000] [93000] [94000] [95000] [96000] [97000] [98000] [99000] [100000] [101000] [102000] [103000] [104000] [105000] [106000] [107000] [108000] [109000] [110000] [111000] [112000] [113000] [114000] [115000] [116000] [117000] [118000] [119000] [120000] [121000] [122000] [123000] [124000] [125000] [126000] [127000] [128000] [129000] [130000] [131000] [132000] [133000] [134000] [135000] [136000] [137000] [138000] [139000] [140000] [141000] [142000] [143000] [144000] [145000] [146000] [147000] [148000] [149000] [150000] [151000] [152000] [153000] [154000] [155000] [156000] [157000] [158000] [159000] [160000] -fusion SPANNING read extraction for scaff: RAPGEF5--EGFR [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] [90000] [91000] [92000] [93000] [94000] [95000] [96000] [97000] [98000] [99000] [100000] [101000] [102000] [103000] [104000] [105000] [106000] [107000] [108000] [109000] [110000] [111000] [112000] [113000] [114000] [115000] [116000] [117000] [118000] [119000] [120000] [121000] [122000] [123000] [124000] [125000] [126000] [127000] [128000] [129000] [130000] [131000] [132000] [133000] [134000] [135000] [136000] [137000] [138000] [139000] [140000] [141000] [142000] [143000] [144000] [145000] [146000] [147000] [148000] [149000] [150000] [151000] [152000] [153000] [154000] [155000] [156000] [157000] [158000] [159000] [160000] [161000] [162000] [163000] [164000] [165000] [166000] [167000] [168000] [169000] [170000] [171000] [172000] [173000] [174000] [175000] [176000] [177000] [178000] [179000] [180000] [181000] [182000] [183000] [184000] [185000] [186000] [187000] [188000] [189000] [190000] [191000] [192000] [193000] [194000] [195000] [196000] [197000] [198000] [199000] [200000] [201000] [202000] [203000] [204000] [205000] [206000] [207000] [208000] [209000] [210000] [211000] [212000] [213000] [214000] [215000] [216000] [217000] [218000] [219000] [220000] [221000] [222000] [223000] [224000] [225000] [226000] [227000] [228000] [229000] [230000] [231000] [232000] [233000] [234000] [235000] [236000] [237000] [238000] [239000] [240000] [241000] [242000] [243000] [244000] [245000] [246000] [247000] [248000] -fusion SPANNING read extraction for scaff: RERE--SHANK2 [1000] [2000] [3000] [4000] [5000] [6000] -fusion SPANNING read extraction for scaff: RIMS1--TRDN [1000] -fusion SPANNING read extraction for scaff: RNU4-66P--TRDN [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] -fusion SPANNING read extraction for scaff: RNU6-54P--KLHL1 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] [90000] [91000] [92000] [93000] [94000] [95000] [96000] [97000] [98000] [99000] [100000] [101000] [102000] [103000] [104000] [105000] [106000] [107000] [108000] [109000] [110000] [111000] [112000] [113000] [114000] [115000] [116000] [117000] [118000] [119000] [120000] [121000] [122000] [123000] [124000] [125000] [126000] [127000] [128000] [129000] [130000] [131000] [132000] [133000] [134000] [135000] [136000] [137000] [138000] [139000] [140000] [141000] [142000] [143000] [144000] [145000] [146000] [147000] [148000] [149000] -fusion SPANNING read extraction for scaff: RPL23A--GOSR1 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] -fusion SPANNING read extraction for scaff: SMG7--CACNA1E [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] -fusion SPANNING read extraction for scaff: STK4--ARHGEF3 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] -fusion SPANNING read extraction for scaff: STON1--GTF2A1L [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] [90000] [91000] [92000] [93000] [94000] [95000] [96000] [97000] -fusion SPANNING read extraction for scaff: STX16--NPEPL1 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] -fusion SPANNING read extraction for scaff: TLK2--AC240565.1 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] -fusion SPANNING read extraction for scaff: TLK2--FAM157A [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] -fusion SPANNING read extraction for scaff: TLK2P1--AC110079.1 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] -fusion SPANNING read extraction for scaff: TMTC2--ACSS3 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] -fusion SPANNING read extraction for scaff: TRAK1--ULK4 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] [90000] [91000] [92000] [93000] [94000] [95000] [96000] [97000] [98000] [99000] [100000] [101000] [102000] [103000] [104000] [105000] [106000] [107000] [108000] [109000] [110000] [111000] [112000] [113000] [114000] [115000] [116000] [117000] [118000] [119000] [120000] [121000] [122000] [123000] [124000] [125000] [126000] [127000] [128000] [129000] [130000] [131000] [132000] [133000] [134000] [135000] [136000] [137000] [138000] [139000] [140000] [141000] [142000] [143000] [144000] [145000] [146000] [147000] [148000] [149000] [150000] [151000] [152000] [153000] [154000] [155000] [156000] [157000] [158000] [159000] [160000] [161000] [162000] [163000] [164000] [165000] [166000] [167000] [168000] [169000] [170000] [171000] [172000] [173000] [174000] [175000] [176000] [177000] [178000] [179000] [180000] [181000] [182000] [183000] [184000] [185000] [186000] [187000] [188000] [189000] [190000] [191000] [192000] [193000] [194000] [195000] [196000] [197000] [198000] [199000] [200000] [201000] [202000] [203000] [204000] [205000] [206000] [207000] [208000] [209000] [210000] [211000] [212000] [213000] [214000] [215000] [216000] [217000] [218000] [219000] [220000] [221000] [222000] [223000] [224000] [225000] [226000] [227000] [228000] [229000] [230000] [231000] [232000] [233000] [234000] [235000] [236000] [237000] [238000] [239000] [240000] [241000] [242000] [243000] [244000] [245000] [246000] [247000] [248000] [249000] [250000] [251000] [252000] [253000] [254000] [255000] [256000] [257000] [258000] [259000] [260000] [261000] [262000] [263000] [264000] [265000] [266000] [267000] [268000] [269000] [270000] [271000] [272000] [273000] [274000] [275000] [276000] [277000] [278000] [279000] [280000] [281000] [282000] [283000] [284000] [285000] [286000] [287000] [288000] [289000] [290000] [291000] [292000] [293000] [294000] [295000] [296000] [297000] [298000] [299000] [300000] [301000] [302000] [303000] [304000] [305000] [306000] [307000] [308000] [309000] [310000] [311000] [312000] [313000] [314000] [315000] [316000] [317000] [318000] [319000] [320000] [321000] [322000] [323000] [324000] [325000] [326000] [327000] [328000] [329000] [330000] [331000] [332000] [333000] [334000] [335000] [336000] [337000] [338000] [339000] [340000] [341000] [342000] [343000] [344000] [345000] [346000] [347000] [348000] [349000] [350000] [351000] [352000] [353000] [354000] [355000] [356000] [357000] [358000] [359000] [360000] [361000] [362000] [363000] [364000] [365000] [366000] [367000] [368000] [369000] [370000] [371000] [372000] -fusion SPANNING read extraction for scaff: TRPS1--LINC00824 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] -fusion SPANNING read extraction for scaff: TVP23C--CDRT4 -filtered reads reasons: $VAR1 = { 'seq similar region alignment' => 30276, 'lacks exon overlap' => 64288 }; EM: Starting log likelihood: -11266.373384 EM: Round [1] log likelihood: -11264.432884 EM: Round [2] log likelihood: -11264.017460 EM: Round [3] log likelihood: -11263.650587 EM: Round [4] log likelihood: -11263.323048 EM: Round [5] log likelihood: -11263.029602 EM: Round [6] log likelihood: -11262.765881 EM: Round [7] log likelihood: -11262.528204 EM: Round [8] log likelihood: -11262.313450 EM: Round [9] log likelihood: -11262.118951 EM: Round [10] log likelihood: -11261.942415 EM: Round [11] log likelihood: -11261.781863 EM: Round [12] log likelihood: -11261.635575 EM: Round [13] log likelihood: -11261.502051 EM: Round [14] log likelihood: -11261.379976 EM: Round [15] log likelihood: -11261.268195 EM: Round [16] log likelihood: -11261.165687 EM: Round [17] log likelihood: -11261.071549 EM: Round [18] log likelihood: -11260.984978 EM: Round [19] log likelihood: -11260.905261 EM: Round [20] log likelihood: -11260.831759 EM: Round [21] log likelihood: -11260.763900 EM: Round [22] log likelihood: -11260.701171 EM: Round [23] log likelihood: -11260.643113 EM: Round [24] log likelihood: -11260.589310 EM: Round [25] log likelihood: -11260.539387 EM: Round [26] log likelihood: -11260.493007 EM: Round [27] log likelihood: -11260.449863 EM: Round [28] log likelihood: -11260.409678 EM: Round [29] log likelihood: -11260.372201 EM: Round [30] log likelihood: -11260.337202 EM: Round [31] log likelihood: -11260.304474 EM: Round [32] log likelihood: -11260.273828 EM: Round [33] log likelihood: -11260.245092 EM: Round [34] log likelihood: -11260.218109 EM: Round [35] log likelihood: -11260.192736 EM: Round [36] log likelihood: -11260.168842 EM: Round [37] log likelihood: -11260.146309 EM: Round [38] log likelihood: -11260.125027 EM: Round [39] log likelihood: -11260.104896 EM: Round [40] log likelihood: -11260.085826 EM: Round [41] log likelihood: -11260.067734 EM: Round [42] log likelihood: -11260.050543 EM: Round [43] log likelihood: -11260.034184 EM: Round [44] log likelihood: -11260.018592 EM: Round [45] log likelihood: -11260.003709 EM: Round [46] log likelihood: -11259.989481 EM: Round [47] log likelihood: -11259.975860 EM: Round [48] log likelihood: -11259.962800 EM: Round [49] log likelihood: -11259.950260 EM: Round [50] log likelihood: -11259.938202 EM: Round [51] log likelihood: -11259.926591 EM: Round [52] log likelihood: -11259.915396 EM: Round [53] log likelihood: -11259.904587 EM: Round [54] log likelihood: -11259.894136 EM: Round [55] log likelihood: -11259.884021 EM: Round [56] log likelihood: -11259.874216 EM: Round [57] log likelihood: -11259.864703 EM: Round [58] log likelihood: -11259.855462 EM: Round [59] log likelihood: -11259.846475 EM: Round [60] log likelihood: -11259.837726 EM: Round [61] log likelihood: -11259.829200 EM: Round [62] log likelihood: -11259.820883 EM: Round [63] log likelihood: -11259.812763 EM: Round [64] log likelihood: -11259.804829 EM: Round [65] log likelihood: -11259.797068 EM: Round [66] log likelihood: -11259.789473 EM: Round [67] log likelihood: -11259.782033 EM: Round [68] log likelihood: -11259.774740 EM: Round [69] log likelihood: -11259.767587 EM: Round [70] log likelihood: -11259.760566 EM: Round [71] log likelihood: -11259.753671 EM: Round [72] log likelihood: -11259.746896 EM: Round [73] log likelihood: -11259.740235 EM: Round [74] log likelihood: -11259.733682 EM: Round [75] log likelihood: -11259.727234 EM: Round [76] log likelihood: -11259.720885 EM: Round [77] log likelihood: -11259.714632 EM: Round [78] log likelihood: -11259.708470 EM: Round [79] log likelihood: -11259.702397 EM: Round [80] log likelihood: -11259.696408 EM: Round [81] log likelihood: -11259.690501 EM: Round [82] log likelihood: -11259.684673 EM: Round [83] log likelihood: -11259.678920 EM: Round [84] log likelihood: -11259.673242 EM: Round [85] log likelihood: -11259.667635 EM: Round [86] log likelihood: -11259.662097 EM: Round [87] log likelihood: -11259.656626 EM: Round [88] log likelihood: -11259.651220 EM: Round [89] log likelihood: -11259.645878 EM: Round [90] log likelihood: -11259.640597 EM: Round [91] log likelihood: -11259.635377 EM: Round [92] log likelihood: -11259.630215 EM: Round [93] log likelihood: -11259.625110 EM: Round [94] log likelihood: -11259.620062 EM: Round [95] log likelihood: -11259.615068 EM: Round [96] log likelihood: -11259.610128 EM: Round [97] log likelihood: -11259.605240 EM: Round [98] log likelihood: -11259.600404 EM: Round [99] log likelihood: -11259.595617 EM: Round [100] log likelihood: -11259.590880 EM: Round [101] log likelihood: -11259.586192 EM: Round [102] log likelihood: -11259.581551 EM: Round [103] log likelihood: -11259.576957 EM: Round [104] log likelihood: -11259.572409 EM: Round [105] log likelihood: -11259.567906 EM: Round [106] log likelihood: -11259.563447 EM: Round [107] log likelihood: -11259.559032 EM: Round [108] log likelihood: -11259.554660 EM: Round [109] log likelihood: -11259.550331 EM: Round [110] log likelihood: -11259.546043 EM: Round [111] log likelihood: -11259.541796 EM: Round [112] log likelihood: -11259.537590 EM: Round [113] log likelihood: -11259.533424 EM: Round [114] log likelihood: -11259.529297 EM: Round [115] log likelihood: -11259.525209 EM: Round [116] log likelihood: -11259.521159 EM: Round [117] log likelihood: -11259.517147 EM: Round [118] log likelihood: -11259.513173 EM: Round [119] log likelihood: -11259.509235 EM: Round [120] log likelihood: -11259.505334 EM: Round [121] log likelihood: -11259.501469 EM: Round [122] log likelihood: -11259.497639 EM: Round [123] log likelihood: -11259.493844 EM: Round [124] log likelihood: -11259.490084 EM: Round [125] log likelihood: -11259.486358 EM: Round [126] log likelihood: -11259.482666 EM: Round [127] log likelihood: -11259.479007 EM: Round [128] log likelihood: -11259.475382 EM: Round [129] log likelihood: -11259.471788 EM: Round [130] log likelihood: -11259.468228 EM: Round [131] log likelihood: -11259.464699 EM: Round [132] log likelihood: -11259.461202 EM: Round [133] log likelihood: -11259.457735 EM: Round [134] log likelihood: -11259.454300 EM: Round [135] log likelihood: -11259.450895 EM: Round [136] log likelihood: -11259.447521 EM: Round [137] log likelihood: -11259.444176 EM: Round [138] log likelihood: -11259.440861 EM: Round [139] log likelihood: -11259.437575 EM: Round [140] log likelihood: -11259.434317 EM: Round [141] log likelihood: -11259.431089 EM: Round [142] log likelihood: -11259.427889 EM: Round [143] log likelihood: -11259.424716 EM: Round [144] log likelihood: -11259.421571 EM: Round [145] log likelihood: -11259.418454 EM: Round [146] log likelihood: -11259.415364 EM: Round [147] log likelihood: -11259.412301 EM: Round [148] log likelihood: -11259.409264 EM: Round [149] log likelihood: -11259.406253 EM: Round [150] log likelihood: -11259.403269 EM: Round [151] log likelihood: -11259.400310 EM: Round [152] log likelihood: -11259.397376 EM: Round [153] log likelihood: -11259.394468 EM: Round [154] log likelihood: -11259.391585 EM: Round [155] log likelihood: -11259.388726 EM: Round [156] log likelihood: -11259.385892 EM: Round [157] log likelihood: -11259.383082 EM: Round [158] log likelihood: -11259.380297 EM: Round [159] log likelihood: -11259.377534 EM: Round [160] log likelihood: -11259.374796 EM: Round [161] log likelihood: -11259.372080 EM: Round [162] log likelihood: -11259.369388 EM: Round [163] log likelihood: -11259.366718 EM: Round [164] log likelihood: -11259.364071 EM: Round [165] log likelihood: -11259.361447 EM: Round [166] log likelihood: -11259.358844 EM: Round [167] log likelihood: -11259.356264 EM: Round [168] log likelihood: -11259.353705 EM: Round [169] log likelihood: -11259.351167 EM: Round [170] log likelihood: -11259.348651 EM: Round [171] log likelihood: -11259.346156 EM: Round [172] log likelihood: -11259.343682 EM: Round [173] log likelihood: -11259.341229 EM: Round [174] log likelihood: -11259.338796 EM: Round [175] log likelihood: -11259.336383 EM: Round [176] log likelihood: -11259.333990 EM: Round [177] log likelihood: -11259.331618 EM: Round [178] log likelihood: -11259.329265 EM: Round [179] log likelihood: -11259.326931 EM: Round [180] log likelihood: -11259.324617 EM: Round [181] log likelihood: -11259.322322 EM: Round [182] log likelihood: -11259.320046 EM: Round [183] log likelihood: -11259.317789 EM: Round [184] log likelihood: -11259.315550 EM: Round [185] log likelihood: -11259.313330 EM: Round [186] log likelihood: -11259.311129 EM: Round [187] log likelihood: -11259.308945 EM: Round [188] log likelihood: -11259.306779 EM: Round [189] log likelihood: -11259.304631 EM: Round [190] log likelihood: -11259.302501 EM: Round [191] log likelihood: -11259.300388 EM: Round [192] log likelihood: -11259.298292 EM: Round [193] log likelihood: -11259.296213 EM: Round [194] log likelihood: -11259.294152 EM: Round [195] log likelihood: -11259.292107 EM: Round [196] log likelihood: -11259.290079 EM: Round [197] log likelihood: -11259.288067 EM: Round [198] log likelihood: -11259.286072 EM: Round [199] log likelihood: -11259.284093 EM: Round [200] log likelihood: -11259.282130 EM: Round [201] log likelihood: -11259.280183 EM: Round [202] log likelihood: -11259.278251 EM: Round [203] log likelihood: -11259.276336 EM: Round [204] log likelihood: -11259.274435 EM: Round [205] log likelihood: -11259.272550 EM: Round [206] log likelihood: -11259.270681 EM: Round [207] log likelihood: -11259.268826 EM: Round [208] log likelihood: -11259.266986 EM: Round [209] log likelihood: -11259.265162 EM: Round [210] log likelihood: -11259.263351 EM: Round [211] log likelihood: -11259.261556 EM: Round [212] log likelihood: -11259.259774 EM: Round [213] log likelihood: -11259.258007 EM: Round [214] log likelihood: -11259.256254 EM: Round [215] log likelihood: -11259.254515 EM: Round [216] log likelihood: -11259.252791 EM: Round [217] log likelihood: -11259.251079 EM: Round [218] log likelihood: -11259.249382 EM: Round [219] log likelihood: -11259.247698 EM: Round [220] log likelihood: -11259.246027 EM: Round [221] log likelihood: -11259.244370 EM: Round [222] log likelihood: -11259.242726 EM: Round [223] log likelihood: -11259.241095 EM: Round [224] log likelihood: -11259.239477 EM: Round [225] log likelihood: -11259.237872 EM: Round [226] log likelihood: -11259.236279 EM: Round [227] log likelihood: -11259.234699 EM: Round [228] log likelihood: -11259.233132 EM: Round [229] log likelihood: -11259.231577 EM: Round [230] log likelihood: -11259.230034 EM: Round [231] log likelihood: -11259.228503 EM: Round [232] log likelihood: -11259.226985 EM: Round [233] log likelihood: -11259.225479 EM: Round [234] log likelihood: -11259.223984 EM: Round [235] log likelihood: -11259.222501 EM: Round [236] log likelihood: -11259.221030 EM: Round [237] log likelihood: -11259.219570 EM: Round [238] log likelihood: -11259.218122 EM: Round [239] log likelihood: -11259.216685 EM: Round [240] log likelihood: -11259.215260 EM: Round [241] log likelihood: -11259.213845 EM: Round [242] log likelihood: -11259.212442 EM: Round [243] log likelihood: -11259.211050 EM: Round [244] log likelihood: -11259.209669 EM: Round [245] log likelihood: -11259.208298 EM: Round [246] log likelihood: -11259.206938 EM: Round [247] log likelihood: -11259.205589 EM: Round [248] log likelihood: -11259.204250 EM: Round [249] log likelihood: -11259.202922 EM: Round [250] log likelihood: -11259.201604 EM: Round [251] log likelihood: -11259.200296 EM: Round [252] log likelihood: -11259.198999 EM: Round [253] log likelihood: -11259.197711 EM: Round [254] log likelihood: -11259.196434 EM: Round [255] log likelihood: -11259.195166 EM: Round [256] log likelihood: -11259.193909 EM: Round [257] log likelihood: -11259.192661 EM: Round [258] log likelihood: -11259.191422 EM: Round [259] log likelihood: -11259.190194 EM: Round [260] log likelihood: -11259.188975 EM: Round [261] log likelihood: -11259.187765 EM: Round [262] log likelihood: -11259.186564 EM: Round [263] log likelihood: -11259.185373 EM: Round [264] log likelihood: -11259.184191 EM: Round [265] log likelihood: -11259.183019 EM: Round [266] log likelihood: -11259.181855 EM: Round [267] log likelihood: -11259.180700 EM: Round [268] log likelihood: -11259.179554 EM: Round [269] log likelihood: -11259.178417 EM: Round [270] log likelihood: -11259.177289 EM: Round [271] log likelihood: -11259.176169 EM: Round [272] log likelihood: -11259.175058 EM: Round [273] log likelihood: -11259.173956 EM: Round [274] log likelihood: -11259.172862 EM: Round [275] log likelihood: -11259.171776 EM: Round [276] log likelihood: -11259.170699 EM: Round [277] log likelihood: -11259.169630 EM: Round [278] log likelihood: -11259.168569 EM: Round [279] log likelihood: -11259.167517 EM: Round [280] log likelihood: -11259.166472 EM: Round [281] log likelihood: -11259.165435 EM: Round [282] log likelihood: -11259.164407 EM: Round [283] log likelihood: -11259.163386 EM: Round [284] log likelihood: -11259.162373 EM: Round [285] log likelihood: -11259.161367 EM: Round [286] log likelihood: -11259.160370 EM: Round [287] log likelihood: -11259.159380 EM: Round [288] log likelihood: -11259.158397 EM: Round [289] log likelihood: -11259.157422 EM: Round [290] log likelihood: -11259.156454 EM: Round [291] log likelihood: -11259.155494 EM: Round [292] log likelihood: -11259.154541 EM: Round [293] log likelihood: -11259.153596 EM: Round [294] log likelihood: -11259.152657 EM: Round [295] log likelihood: -11259.151726 EM: Round [296] log likelihood: -11259.150801 EM: Round [297] log likelihood: -11259.149884 EM: Round [298] log likelihood: -11259.148974 EM: Round [299] log likelihood: -11259.148070 EM: Round [300] log likelihood: -11259.147174 EM: Round [301] log likelihood: -11259.146284 EM: Round [302] log likelihood: -11259.145401 EM: Round [303] log likelihood: -11259.144525 EM: Round [304] log likelihood: -11259.143655 EM: Round [305] log likelihood: -11259.142792 EM: Round [306] log likelihood: -11259.141935 EM: Round [307] log likelihood: -11259.141085 EM: Round [308] log likelihood: -11259.140241 EM: Round [309] log likelihood: -11259.139404 EM: Round [310] log likelihood: -11259.138573 EM: Round [311] log likelihood: -11259.137748 EM: Round [312] log likelihood: -11259.136930 EM: Round [313] log likelihood: -11259.136117 EM: Round [314] log likelihood: -11259.135311 EM: Round [315] log likelihood: -11259.134511 EM: Round [316] log likelihood: -11259.133717 EM: Round [317] log likelihood: -11259.132929 EM: Round [318] log likelihood: -11259.132146 EM: Round [319] log likelihood: -11259.131370 EM: Round [320] log likelihood: -11259.130599 EM: Round [321] log likelihood: -11259.129835 EM: Round [322] log likelihood: -11259.129076 EM: Round [323] log likelihood: -11259.128322 EM: Round [324] log likelihood: -11259.127575 EM: Round [325] log likelihood: -11259.126833 EM: Round [326] log likelihood: -11259.126096 EM: Round [327] log likelihood: -11259.125365 EM: Round [328] log likelihood: -11259.124640 EM: Round [329] log likelihood: -11259.123920 EM: Round [330] log likelihood: -11259.123205 EM: Round [331] log likelihood: -11259.122496 EM: Round [332] log likelihood: -11259.121792 EM: Round [333] log likelihood: -11259.121093 EM: Round [334] log likelihood: -11259.120399 EM: Round [335] log likelihood: -11259.119711 EM: Round [336] log likelihood: -11259.119028 EM: Round [337] log likelihood: -11259.118350 EM: Round [338] log likelihood: -11259.117677 EM: Round [339] log likelihood: -11259.117009 EM: Round [340] log likelihood: -11259.116346 EM: Round [341] log likelihood: -11259.115688 EM: Round [342] log likelihood: -11259.115035 EM: Round [343] log likelihood: -11259.114386 EM: Round [344] log likelihood: -11259.113743 EM: Round [345] log likelihood: -11259.113104 EM: Round [346] log likelihood: -11259.112470 EM: Round [347] log likelihood: -11259.111841 EM: Round [348] log likelihood: -11259.111217 EM: Round [349] log likelihood: -11259.110597 EM: Round [350] log likelihood: -11259.109982 EM: Round [351] log likelihood: -11259.109371 EM: Round [352] log likelihood: -11259.108765 EM: Round [353] log likelihood: -11259.108163 EM: Round [354] log likelihood: -11259.107566 EM: Round [355] log likelihood: -11259.106973 EM: Round [356] log likelihood: -11259.106385 EM: Round [357] log likelihood: -11259.105801 EM: Round [358] log likelihood: -11259.105221 EM: Round [359] log likelihood: -11259.104646 EM: Round [360] log likelihood: -11259.104075 EM: Round [361] log likelihood: -11259.103508 EM: Round [362] log likelihood: -11259.102946 EM: Round [363] log likelihood: -11259.102387 EM: Round [364] log likelihood: -11259.101833 EM: Round [365] log likelihood: -11259.101283 EM: Round [366] log likelihood: -11259.100737 EM: Round [367] log likelihood: -11259.100194 EM: Round [368] log likelihood: -11259.099656 EM: Round [369] log likelihood: -11259.099122 EM: Round [370] log likelihood: -11259.098592 EM: Round [371] log likelihood: -11259.098066 EM: Round [372] log likelihood: -11259.097544 EM: Round [373] log likelihood: -11259.097025 EM: Round [374] log likelihood: -11259.096510 EM: Round [375] log likelihood: -11259.096000 EM: Round [376] log likelihood: -11259.095492 EM: Round [377] log likelihood: -11259.094989 EM: Round [378] log likelihood: -11259.094490 EM: Round [379] log likelihood: -11259.093994 EM: Round [380] log likelihood: -11259.093501 EM: Round [381] log likelihood: -11259.093013 EM: Round [382] log likelihood: -11259.092528 EM: Round [383] log likelihood: -11259.092046 EM: Round [384] log likelihood: -11259.091568 EM: Round [385] log likelihood: -11259.091094 EM: Round [386] log likelihood: -11259.090623 EM: Round [387] log likelihood: -11259.090155 EM: Round [388] log likelihood: -11259.089691 EM: Round [389] log likelihood: -11259.089231 EM: Round [390] log likelihood: -11259.088774 EM: Round [391] log likelihood: -11259.088320 EM: Round [392] log likelihood: -11259.087869 EM: Round [393] log likelihood: -11259.087422 EM: Round [394] log likelihood: -11259.086978 EM: Round [395] log likelihood: -11259.086538 EM: Round [396] log likelihood: -11259.086100 EM: Round [397] log likelihood: -11259.085666 EM: Round [398] log likelihood: -11259.085235 EM: Round [399] log likelihood: -11259.084807 EM: Round [400] log likelihood: -11259.084383 EM: Round [401] log likelihood: -11259.083961 EM: Round [402] log likelihood: -11259.083542 EM: Round [403] log likelihood: -11259.083127 EM: Round [404] log likelihood: -11259.082715 EM: Round [405] log likelihood: -11259.082305 EM: Round [406] log likelihood: -11259.081899 EM: Round [407] log likelihood: -11259.081496 EM: Round [408] log likelihood: -11259.081095 EM: Round [409] log likelihood: -11259.080698 EM: Round [410] log likelihood: -11259.080303 EM: Round [411] log likelihood: -11259.079912 EM: Round [412] log likelihood: -11259.079523 EM: Round [413] log likelihood: -11259.079137 EM: Round [414] log likelihood: -11259.078754 EM: Round [415] log likelihood: -11259.078373 EM: Round [416] log likelihood: -11259.077996 EM: Round [417] log likelihood: -11259.077621 EM: Round [418] log likelihood: -11259.077249 EM: Round [419] log likelihood: -11259.076880 EM: Round [420] log likelihood: -11259.076513 EM: Round [421] log likelihood: -11259.076149 EM: Round [422] log likelihood: -11259.075788 EM: Round [423] log likelihood: -11259.075429 EM: Round [424] log likelihood: -11259.075073 EM: Round [425] log likelihood: -11259.074720 EM: Round [426] log likelihood: -11259.074369 EM: Round [427] log likelihood: -11259.074021 EM: Round [428] log likelihood: -11259.073675 EM: Round [429] log likelihood: -11259.073332 EM: Round [430] log likelihood: -11259.072991 EM: Round [431] log likelihood: -11259.072653 EM: Round [432] log likelihood: -11259.072317 EM: Round [433] log likelihood: -11259.071984 EM: Round [434] log likelihood: -11259.071653 EM: Round [435] log likelihood: -11259.071325 EM: Round [436] log likelihood: -11259.070999 EM: Round [437] log likelihood: -11259.070675 EM: Round [438] log likelihood: -11259.070354 EM: Round [439] log likelihood: -11259.070035 EM: Round [440] log likelihood: -11259.069718 EM: Round [441] log likelihood: -11259.069404 EM: Round [442] log likelihood: -11259.069091 EM: Round [443] log likelihood: -11259.068782 EM: Round [444] log likelihood: -11259.068474 EM: Round [445] log likelihood: -11259.068169 EM: Round [446] log likelihood: -11259.067866 EM: Round [447] log likelihood: -11259.067565 EM: Round [448] log likelihood: -11259.067266 EM: Round [449] log likelihood: -11259.066970 EM: Round [450] log likelihood: -11259.066675 EM: Round [451] log likelihood: -11259.066383 EM: Round [452] log likelihood: -11259.066093 EM: Round [453] log likelihood: -11259.065805 EM: Round [454] log likelihood: -11259.065519 EM: Round [455] log likelihood: -11259.065235 EM: Round [456] log likelihood: -11259.064954 EM: Round [457] log likelihood: -11259.064674 EM: Round [458] log likelihood: -11259.064396 EM: Round [459] log likelihood: -11259.064121 EM: Round [460] log likelihood: -11259.063847 EM: Round [461] log likelihood: -11259.063575 EM: Round [462] log likelihood: -11259.063306 EM: Round [463] log likelihood: -11259.063038 EM: Round [464] log likelihood: -11259.062772 EM: Round [465] log likelihood: -11259.062508 EM: Round [466] log likelihood: -11259.062246 EM: Round [467] log likelihood: -11259.061986 EM: Round [468] log likelihood: -11259.061728 EM: Round [469] log likelihood: -11259.061472 EM: Round [470] log likelihood: -11259.061218 EM: Round [471] log likelihood: -11259.060965 EM: Round [472] log likelihood: -11259.060714 EM: Round [473] log likelihood: -11259.060465 EM: Round [474] log likelihood: -11259.060218 EM: Round [475] log likelihood: -11259.059973 EM: Round [476] log likelihood: -11259.059729 EM: Round [477] log likelihood: -11259.059488 EM: Round [478] log likelihood: -11259.059248 EM: Round [479] log likelihood: -11259.059009 EM: Round [480] log likelihood: -11259.058773 EM: Round [481] log likelihood: -11259.058538 EM: Round [482] log likelihood: -11259.058305 EM: Round [483] log likelihood: -11259.058073 EM: Round [484] log likelihood: -11259.057843 EM: Round [485] log likelihood: -11259.057615 EM: Round [486] log likelihood: -11259.057389 EM: Round [487] log likelihood: -11259.057164 EM: Round [488] log likelihood: -11259.056941 EM: Round [489] log likelihood: -11259.056719 EM: Round [490] log likelihood: -11259.056499 EM: Round [491] log likelihood: -11259.056281 EM: Round [492] log likelihood: -11259.056064 EM: Round [493] log likelihood: -11259.055849 EM: Round [494] log likelihood: -11259.055635 EM: Round [495] log likelihood: -11259.055423 EM: Round [496] log likelihood: -11259.055212 EM: Round [497] log likelihood: -11259.055003 EM: Round [498] log likelihood: -11259.054796 EM: Round [499] log likelihood: -11259.054590 EM: Round [500] log likelihood: -11259.054385 EM: Round [501] log likelihood: -11259.054182 EM: Round [502] log likelihood: -11259.053980 EM: Round [503] log likelihood: -11259.053780 EM: Round [504] log likelihood: -11259.053581 EM: Round [505] log likelihood: -11259.053384 EM: Round [506] log likelihood: -11259.053188 EM: Round [507] log likelihood: -11259.052994 EM: Round [508] log likelihood: -11259.052801 EM: Round [509] log likelihood: -11259.052609 EM: Round [510] log likelihood: -11259.052419 EM: Round [511] log likelihood: -11259.052230 EM: Round [512] log likelihood: -11259.052042 EM: Round [513] log likelihood: -11259.051856 EM: Round [514] log likelihood: -11259.051671 EM: Round [515] log likelihood: -11259.051488 EM: Round [516] log likelihood: -11259.051305 EM: Round [517] log likelihood: -11259.051125 EM: Round [518] log likelihood: -11259.050945 EM: Round [519] log likelihood: -11259.050767 EM: Round [520] log likelihood: -11259.050590 EM: Round [521] log likelihood: -11259.050414 EM: Round [522] log likelihood: -11259.050240 EM: Round [523] log likelihood: -11259.050066 EM: Round [524] log likelihood: -11259.049894 EM: Round [525] log likelihood: -11259.049724 EM: Round [526] log likelihood: -11259.049554 EM: Round [527] log likelihood: -11259.049386 EM: Round [528] log likelihood: -11259.049219 EM: Round [529] log likelihood: -11259.049053 EM: Round [530] log likelihood: -11259.048888 EM: Round [531] log likelihood: -11259.048725 EM: Round [532] log likelihood: -11259.048563 EM: Round [533] log likelihood: -11259.048402 EM: Round [534] log likelihood: -11259.048242 EM: Round [535] log likelihood: -11259.048083 EM: Round [536] log likelihood: -11259.047925 EM: Round [537] log likelihood: -11259.047769 EM: Round [538] log likelihood: -11259.047613 EM: Round [539] log likelihood: -11259.047459 EM: Round [540] log likelihood: -11259.047306 EM: Round [541] log likelihood: -11259.047154 EM: Round [542] log likelihood: -11259.047003 EM: Round [543] log likelihood: -11259.046853 EM: Round [544] log likelihood: -11259.046704 EM: Round [545] log likelihood: -11259.046557 EM: Round [546] log likelihood: -11259.046410 EM: Round [547] log likelihood: -11259.046264 EM: Round [548] log likelihood: -11259.046120 EM: Round [549] log likelihood: -11259.045976 EM: Round [550] log likelihood: -11259.045834 EM: Round [551] log likelihood: -11259.045692 EM: Round [552] log likelihood: -11259.045552 EM: Round [553] log likelihood: -11259.045412 EM: Round [554] log likelihood: -11259.045274 EM: Round [555] log likelihood: -11259.045136 EM: Round [556] log likelihood: -11259.045000 EM: Round [557] log likelihood: -11259.044865 EM: Round [558] log likelihood: -11259.044730 EM: Round [559] log likelihood: -11259.044597 EM: Round [560] log likelihood: -11259.044464 EM: Round [561] log likelihood: -11259.044332 EM: Round [562] log likelihood: -11259.044202 EM: Round [563] log likelihood: -11259.044072 EM: Round [564] log likelihood: -11259.043943 EM: Round [565] log likelihood: -11259.043815 EM: Round [566] log likelihood: -11259.043688 EM: Round [567] log likelihood: -11259.043562 EM: Round [568] log likelihood: -11259.043437 EM: Round [569] log likelihood: -11259.043313 EM: Round [570] log likelihood: -11259.043190 EM: Round [571] log likelihood: -11259.043067 EM: Round [572] log likelihood: -11259.042946 EM: Round [573] log likelihood: -11259.042825 EM: Round [574] log likelihood: -11259.042705 EM: Round [575] log likelihood: -11259.042586 EM: Round [576] log likelihood: -11259.042468 EM: Round [577] log likelihood: -11259.042351 EM: Round [578] log likelihood: -11259.042234 EM: Round [579] log likelihood: -11259.042119 EM: Round [580] log likelihood: -11259.042004 EM: Round [581] log likelihood: -11259.041890 EM: Round [582] log likelihood: -11259.041777 EM: Round [583] log likelihood: -11259.041664 EM: Round [584] log likelihood: -11259.041553 EM: Round [585] log likelihood: -11259.041442 EM: Round [586] log likelihood: -11259.041332 EM: Round [587] log likelihood: -11259.041223 EM: Round [588] log likelihood: -11259.041115 EM: Round [589] log likelihood: -11259.041007 EM: Round [590] log likelihood: -11259.040900 EM: Round [591] log likelihood: -11259.040794 EM: Round [592] log likelihood: -11259.040689 EM: Round [593] log likelihood: -11259.040585 EM: Round [594] log likelihood: -11259.040481 EM: Round [595] log likelihood: -11259.040378 EM: Round [596] log likelihood: -11259.040276 EM: Round [597] log likelihood: -11259.040174 EM: Round [598] log likelihood: -11259.040073 EM: Round [599] log likelihood: -11259.039973 EM: Round [600] log likelihood: -11259.039874 EM: Stopping iterations at round 600 due to insufficient improvement in likelihood. [bam_sort_core] merging from 0 files and 8 in-memory blocks... -extracting read coordinates from /tmp/nxf.2o2Rfz1nfN/aih-tih-sc-6d9e6f-R1_A23YTGFLT4_1.consolidated.bam into /tmp/nxf.2o2Rfz1nfN/aih-tih-sc-6d9e6f-R1_A23YTGFLT4_1.consolidated.bam.read_coords CMD: touch /tmp/nxf.2o2Rfz1nfN/aih-tih-sc-6d9e6f-R1_A23YTGFLT4_1.consolidated.bam.read_coords.ok CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k2,2 -k4,4n /tmp/nxf.2o2Rfz1nfN/aih-tih-sc-6d9e6f-R1_A23YTGFLT4_1.consolidated.bam.read_coords > /tmp/nxf.2o2Rfz1nfN/aih-tih-sc-6d9e6f-R1_A23YTGFLT4_1.consolidated.bam.read_coords.sort_by_readname CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k3,3n /tmp/nxf.2o2Rfz1nfN/aih-tih-sc-6d9e6f-R1_A23YTGFLT4_1.consolidated.bam.frag_coords > /tmp/nxf.2o2Rfz1nfN/aih-tih-sc-6d9e6f-R1_A23YTGFLT4_1.consolidated.bam.frag_coords.coord_sorted CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.2o2Rfz1nfN/fi_workdir/aih-tih-sc-6d9e6f-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo --genome_lib_dir ctat_genome_lib_build_dir CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.2o2Rfz1nfN/fi_workdir/aih-tih-sc-6d9e6f-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter --genome_lib_dir ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 50 CMD: cp /tmp/nxf.2o2Rfz1nfN/fi_workdir/aih-tih-sc-6d9e6f-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter.post_promisc_filter /tmp/nxf.2o2Rfz1nfN/aih-tih-sc-6d9e6f-R1_A23YTGFLT4_1.post_blast_and_promiscuity_filter -done, see /tmp/nxf.2o2Rfz1nfN/aih-tih-sc-6d9e6f-R1_A23YTGFLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass EM: Starting log likelihood: -10731.030005 EM: Round [1] log likelihood: -10730.368708 EM: Round [2] log likelihood: -10730.368272 EM: Round [3] log likelihood: -10730.368271 EM: Stopping iterations at round 3 due to insufficient improvement in likelihood. -total frags in /tmp/nxf.2o2Rfz1nfN/aih-tih-sc-6d9e6f-R1_A23YTGFLT4_1_1.fastp.fastq.gz: 296397279 Warning - not locating file: /tmp/nxf.2o2Rfz1nfN/aih-tih-sc-6d9e6f-R1_A23YTGFLT4_1.gmap_trinity_GG.fusions.gff3.bed WARNING, no entry stored in dbm for [ENSG00000212719.13] WARNING, no entry stored in dbm for [ENSG00000212719.13] WARNING, no entry stored in dbm for [ENSG00000212719.13] WARNING, no entry stored in dbm for [ENSG00000212719.13] WARNING, no entry stored in dbm for [ENSG00000212719.13] WARNING, no entry stored in dbm for [ENSG00000212719.13] WARNING, no entry stored in dbm for [ENSG00000212719.13] WARNING, no entry stored in dbm for [ENSG00000212719.13] WARNING, no entry stored in dbm for [ENSG00000212719.13] WARNING, no entry stored in dbm for [ENSG00000280136.2] WARNING, no entry stored in dbm for [ENSG00000259345.7] WARNING, no entry stored in dbm for [ENSG00000259345.7] WARNING, no entry stored in dbm for [ENSG00000259345.7] WARNING, no entry stored in dbm for [ENSG00000259345.7] WARNING, no entry stored in dbm for [ENSG00000259345.7] WARNING, no entry stored in dbm for [ENSG00000259345.7] WARNING, no entry stored in dbm for [ENSG00000259345.7] WARNING, no entry stored in dbm for [ENSG00000259345.7] WARNING, no entry stored in dbm for [ENSG00000226049.3] WARNING, no entry stored in dbm for [ENSG00000260404.3] WARNING, no entry stored in dbm for [ENSG00000212719.13] WARNING, no entry stored in dbm for [ENSG00000212719.13] WARNING, no entry stored in dbm for [ENSG00000223726.1] WARNING, no entry stored in dbm for [ENSG00000214553.10] WARNING, no entry stored in dbm for [ENSG00000214553.10] WARNING, no entry stored in dbm for [ENSG00000214553.10] WARNING, no entry stored in dbm for [ENSG00000214553.10] WARNING, no entry stored in dbm for [ENSG00000267198.1] WARNING, no entry stored in dbm for [ENSG00000272134.1] WARNING, no entry stored in dbm for [ENSG00000267198.1] WARNING, no entry stored in dbm for [ENSG00000272134.1] WARNING, no entry stored in dbm for [ENSG00000282057.1] WARNING, no entry stored in dbm for [ENSG00000282057.1] WARNING, no entry stored in dbm for [ENSG00000282057.1] WARNING, no entry stored in dbm for [ENSG00000254275.6] WARNING, no entry stored in dbm for [ENSG00000274487.2] WARNING, no entry stored in dbm for [ENSG00000228768.3] ls: cannot access 'IGV_inputs': No such file or directory