Done.
-parsing GTF file: /tmp/nxf.zgRxuE7wfG/aih-tih-sc-f6bb6f-R1_A23YTGFLT4_1.gtf
* Running CMD: /usr/local/bin/STAR  --runThreadN 8  --genomeDir /tmp/nxf.zgRxuE7wfG/ctat_genome_lib_build_dir/ref_genome.fa.star.idx  --outSAMtype BAM SortedByCoordinate  --twopassMode None  --alignSJDBoverhangMin 10  --genomeSuffixLengthMax 10000 --limitBAMsortRAM 47271261705  --alignInsertionFlush Right   --alignMatesGapMax 100000  --alignIntronMax 100000  --outSAMattributes All  --readFilesIn /tmp/nxf.zgRxuE7wfG/aih-tih-sc-f6bb6f-R1_A23YTGFLT4_1_1.fastp.fastq.gz /tmp/nxf.zgRxuE7wfG/aih-tih-sc-f6bb6f-R1_A23YTGFLT4_1_2.fastp.fastq.gz  --genomeFastaFiles /tmp/nxf.zgRxuE7wfG/fi_workdir/aih-tih-sc-f6bb6f-R1_A23YTGFLT4_1.fa  --outSAMfilter KeepAllAddedReferences  --sjdbGTFfile /tmp/nxf.zgRxuE7wfG/fi_workdir/aih-tih-sc-f6bb6f-R1_A23YTGFLT4_1.gtf  --alignSJstitchMismatchNmax 5 -1 5 5  --scoreGapNoncan -6  --readFilesCommand 'gunzip -c' 
* Running CMD: mv Aligned.sortedByCoord.out.bam aih-tih-sc-f6bb6f-R1_A23YTGFLT4_1.star.sortedByCoord.out.bam
* Running CMD: samtools index aih-tih-sc-f6bb6f-R1_A23YTGFLT4_1.star.sortedByCoord.out.bam
11:03:05 : INFO : Done.
-parsing GTF file: /tmp/nxf.zgRxuE7wfG/fi_workdir/aih-tih-sc-f6bb6f-R1_A23YTGFLT4_1.gtf
-parsing /tmp/nxf.zgRxuE7wfG/fi_workdir/aih-tih-sc-f6bb6f-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam

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[10990000]   -done parsing /tmp/nxf.zgRxuE7wfG/fi_workdir/aih-tih-sc-f6bb6f-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam.  Extracting junction info.
junction read elimination tally: $VAR1 = {
          'num genes matched < 2' => 253,
          'exons hit < 2' => 2,
          'num_hits: 5 != num_counted_on_fusion_contigs 4 ' => 8,
          'num_hits: 3 != num_counted_on_fusion_contigs 2 ' => 350,
          'num_hits: 3 != num_counted_on_fusion_contigs 1 ' => 605,
          'num_hits: 6 != num_counted_on_fusion_contigs 5 ' => 90,
          'num_hits: 5 != num_counted_on_fusion_contigs 3 ' => 3,
          'num_hits: 4 != num_counted_on_fusion_contigs 2 ' => 156,
          'num_hits: 4 != num_counted_on_fusion_contigs 1 ' => 9,
          'num_hits: 4 != num_counted_on_fusion_contigs 3 ' => 282,
          'per_id < 96' => 52070,
          'excessive soft clipping' => 90937,
          'num_hits: 6 != num_counted_on_fusion_contigs 3 ' => 75,
          'num_hits: 6 != num_counted_on_fusion_contigs 1 ' => 36,
          'num_hits: 6 != num_counted_on_fusion_contigs 4 ' => 28,
          'seq-similar region overlap' => 1,
          'low complexity anchor region' => 50,
          'small anchor length' => 563,
          'num_hits: 5 != num_counted_on_fusion_contigs 2 ' => 6,
          'num_hits: 2 != num_counted_on_fusion_contigs 1 ' => 3087,
          'num_hits: 5 != num_counted_on_fusion_contigs 1 ' => 2,
          'num_hits: 8 != num_counted_on_fusion_contigs 4 ' => 68,
          ' ** passed ** ' => 15949,
          'num_hits: 6 != num_counted_on_fusion_contigs 2 ' => 8
        };
-writing fusion junction support info.
-outputting the spanning read info: /tmp/nxf.zgRxuE7wfG/fi_workdir/aih-tih-sc-f6bb6f-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam.fusion_spanning_info.
 - counting read alignments among fusion contigs.

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[57000]   -fusion SPANNING read extraction for scaff: AC009432.1--IQCH

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[56000]   -fusion SPANNING read extraction for scaff: AC009432.2--IQCH

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[56000]   -fusion SPANNING read extraction for scaff: AC022308.1--IQCH

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[10000]   -fusion SPANNING read extraction for scaff: AC092807.3--DDAH1

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[115000]   -fusion SPANNING read extraction for scaff: AC136431.1--PKD1P5

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[783000]   -fusion SPANNING read extraction for scaff: ACTBP6--ACTB

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[39000]   
[40000]   -fusion SPANNING read extraction for scaff: ADAM10--IL16

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[68000]   -fusion SPANNING read extraction for scaff: ADAMTS7P4--SNUPN

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[226000]   -fusion SPANNING read extraction for scaff: AKAP13--SNUPN

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[155000]   
[156000]   -fusion SPANNING read extraction for scaff: AKAP13--SEMA6D

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[154000]   
[155000]   -fusion SPANNING read extraction for scaff: AKAP13--ADAMTS7P4

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[23000]   
[24000]   -fusion SPANNING read extraction for scaff: AL139042.1--CNR1

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[1370000]   -fusion SPANNING read extraction for scaff: AL390334.1--NFIB

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[265000]   -fusion SPANNING read extraction for scaff: APH1A--PI4KB

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[6000]   -fusion SPANNING read extraction for scaff: ARID3B--AC012378.1

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[29000]   -fusion SPANNING read extraction for scaff: ARID3B--SQOR

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[66000]   -fusion SPANNING read extraction for scaff: ARL6IP1--CCP110

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[131000]   -fusion SPANNING read extraction for scaff: ARNT--ADAMTSL4

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[95000]   -fusion SPANNING read extraction for scaff: ARPP19--IQCH

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[40000]   -fusion SPANNING read extraction for scaff: ARPP19--AC009432.1

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[39000]   -fusion SPANNING read extraction for scaff: ARPP19--AC022308.1

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[666000]   -fusion SPANNING read extraction for scaff: ASH1L--ARNT

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[114000]   -fusion SPANNING read extraction for scaff: ATF6--UHMK1

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[68000]   -fusion SPANNING read extraction for scaff: ATF6--UQCRBP2

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[68000]   -fusion SPANNING read extraction for scaff: ATF6--AL583804.1

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[68000]   -fusion SPANNING read extraction for scaff: ATF6--FMO7P

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[132000]   -fusion SPANNING read extraction for scaff: C15orf61--RBPMS2

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[23000]   -fusion SPANNING read extraction for scaff: CA8--LINC01301

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[37000]   
[38000]   -fusion SPANNING read extraction for scaff: CASK--PRTG

[1000]   
[2000]   -fusion SPANNING read extraction for scaff: CCDC33--INSYN1-AS1

[1000]   
[2000]   -fusion SPANNING read extraction for scaff: CCDC33--AC018943.1

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[156000]   -fusion SPANNING read extraction for scaff: CGN--VPS45

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[211000]   -fusion SPANNING read extraction for scaff: CLN6--CLCN3P1

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[204000]   -fusion SPANNING read extraction for scaff: CLN6--AL135790.1

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[204000]   -fusion SPANNING read extraction for scaff: CLN6--AL161788.1

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[173000]   -fusion SPANNING read extraction for scaff: COBL--GLI3

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[12000]   
[13000]   -fusion SPANNING read extraction for scaff: CRYZL2P--SEC16B

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[357000]   -fusion SPANNING read extraction for scaff: DYSF--PPP1CB

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[85000]   
[86000]   -fusion SPANNING read extraction for scaff: ETFA--RBPMS2

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[106000]   
[107000]   -fusion SPANNING read extraction for scaff: EXOC6B--CLIC3

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[171000]   -fusion SPANNING read extraction for scaff: FAM126B--CFLAR

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[109000]   -fusion SPANNING read extraction for scaff: FGFR1--IDO2

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[97000]   -fusion SPANNING read extraction for scaff: FGFR1--AC007991.3

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[211000]   -fusion SPANNING read extraction for scaff: GTF2IP23--FBN1

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[187000]   
[188000]   -fusion SPANNING read extraction for scaff: IL16--ZNF609

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[108000]   
[109000]   -fusion SPANNING read extraction for scaff: IQCH-AS1--ADAM10

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[165000]   
[166000]   -fusion SPANNING read extraction for scaff: JAK2--HIVEP1

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[52000]   -fusion SPANNING read extraction for scaff: JARID2--HULC

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[155000]   
[156000]   -fusion SPANNING read extraction for scaff: KDM2A--GRK2

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[16000]   -fusion SPANNING read extraction for scaff: LCLAT1--HMGB1P25

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[16000]   -fusion SPANNING read extraction for scaff: LCLAT1--RPL30P3

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[56000]   
[57000]   -fusion SPANNING read extraction for scaff: LINC02852--IQCH

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[120000]   -fusion SPANNING read extraction for scaff: MAP2K5--SCAPER

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[89000]   -fusion SPANNING read extraction for scaff: MPDZ--AL353595.1

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[337000]   -fusion SPANNING read extraction for scaff: NECTIN4--CDKAL1

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[51000]   -fusion SPANNING read extraction for scaff: NR2C2--AC138776.1

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[51000]   -fusion SPANNING read extraction for scaff: NR2C2--AC114947.1

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[51000]   -fusion SPANNING read extraction for scaff: NR2C2--AC097374.1

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[51000]   -fusion SPANNING read extraction for scaff: NR2C2--AC140113.1

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[51000]   -fusion SPANNING read extraction for scaff: NR2C2--AC134878.1

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[164000]   -fusion SPANNING read extraction for scaff: PCLAF--AKAP13

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[9000]   -fusion SPANNING read extraction for scaff: PCLAF--AC100830.1

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[30000]   -fusion SPANNING read extraction for scaff: PCLAF--RBPMS2

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[384000]   -fusion SPANNING read extraction for scaff: PCNT--RYR2

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[52000]   
[53000]   -fusion SPANNING read extraction for scaff: PFN2--RNF13

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[75000]   
[76000]   -fusion SPANNING read extraction for scaff: PLEKHO2--PBX3

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[59000]   
[60000]   
[61000]   -fusion SPANNING read extraction for scaff: PLEKHO2--AL589923.1

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[125000]   -fusion SPANNING read extraction for scaff: PRSS27--TPSB2

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[41000]   -fusion SPANNING read extraction for scaff: PRTG--FER1L6

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[46000]   -fusion SPANNING read extraction for scaff: PTPN9--PARP6

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[16000]   -fusion SPANNING read extraction for scaff: PTPN9--CCDC33

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[25000]   -fusion SPANNING read extraction for scaff: RAB11FIP1--FP236383.3

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[26000]   -fusion SPANNING read extraction for scaff: RARS1--AC117834.1

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[38000]   -fusion SPANNING read extraction for scaff: RBL1--AC104042.1

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[38000]   -fusion SPANNING read extraction for scaff: RBL1--AC061997.1

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[215000]   -fusion SPANNING read extraction for scaff: RELA--RELA-DT

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[20000]   -fusion SPANNING read extraction for scaff: RNF13--ANKUB1

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[210000]   
[211000]   -fusion SPANNING read extraction for scaff: RNU6-1254P--FBN1

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[18000]   
[19000]   
[20000]   -fusion SPANNING read extraction for scaff: RNU6-745P--CTDSPL2

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[94000]   
[95000]   
[96000]   -fusion SPANNING read extraction for scaff: RPS15A--CCP110

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[60000]   
[61000]   
[62000]   
[63000]   
[64000]   
[65000]   
[66000]   -fusion SPANNING read extraction for scaff: SCARB2--CXCL11

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[6000]   
[7000]   
[8000]   -fusion SPANNING read extraction for scaff: SKAP1--EPHA1-AS1

[1000]   
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[6000]   
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[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   -fusion SPANNING read extraction for scaff: SLFN11--SLFN12

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[100000]   
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[173000]   
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[199000]   
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[202000]   
[203000]   
[204000]   
[205000]   -fusion SPANNING read extraction for scaff: SNUPN--MTSS1

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[7000]   
[8000]   
[9000]   -fusion SPANNING read extraction for scaff: SNX24--PRDM6

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[30000]   
[31000]   -fusion SPANNING read extraction for scaff: SORD--AC009558.1

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[30000]   
[31000]   
[32000]   -fusion SPANNING read extraction for scaff: SORD--SEMA6D

[1000]   
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[6000]   
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[8000]   
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[22000]   
[23000]   -fusion SPANNING read extraction for scaff: SQOR--LINC02055

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[71000]   
[72000]   
[73000]   -fusion SPANNING read extraction for scaff: TLE3--CTDSPL2

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[8000]   
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[46000]   
[47000]   -fusion SPANNING read extraction for scaff: TLK2--AC240565.1

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[8000]   
[9000]   -fusion SPANNING read extraction for scaff: TLK2P1--AC110079.1

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[14000]   -fusion SPANNING read extraction for scaff: UBE2Q2P1--GOLGA6L10

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[30000]   -fusion SPANNING read extraction for scaff: USP3--AC019294.2

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[26000]   -fusion SPANNING read extraction for scaff: VKORC1L1--AC090517.5

[1000]   
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[3000]   -fusion SPANNING read extraction for scaff: ZNF229--AL357052.1

[1000]   
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[9000]   
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[12000]   
[13000]   -fusion SPANNING read extraction for scaff: ZNF566--FP671120.8

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[13000]   
[14000]   -fusion SPANNING read extraction for scaff: ZNF566--MIR6724-2
-filtered reads reasons: $VAR1 = {
          'seq similar region alignment' => 7249,
          'lacks exon overlap' => 139853
        };
EM: Starting log likelihood: -33664.949382
EM: Round [1] log likelihood: -33649.438480
EM: Round [2] log likelihood: -33649.028917
EM: Round [3] log likelihood: -33648.941788
EM: Round [4] log likelihood: -33648.879918
EM: Round [5] log likelihood: -33648.823997
EM: Round [6] log likelihood: -33648.771982
EM: Round [7] log likelihood: -33648.723385
EM: Round [8] log likelihood: -33648.677897
EM: Round [9] log likelihood: -33648.635255
EM: Round [10] log likelihood: -33648.595225
EM: Round [11] log likelihood: -33648.557600
EM: Round [12] log likelihood: -33648.522195
EM: Round [13] log likelihood: -33648.488844
EM: Round [14] log likelihood: -33648.457396
EM: Round [15] log likelihood: -33648.427715
EM: Round [16] log likelihood: -33648.399679
EM: Round [17] log likelihood: -33648.373174
EM: Round [18] log likelihood: -33648.348099
EM: Round [19] log likelihood: -33648.324361
EM: Round [20] log likelihood: -33648.301873
EM: Round [21] log likelihood: -33648.280556
EM: Round [22] log likelihood: -33648.260339
EM: Round [23] log likelihood: -33648.241154
EM: Round [24] log likelihood: -33648.222940
EM: Round [25] log likelihood: -33648.205639
EM: Round [26] log likelihood: -33648.189198
EM: Round [27] log likelihood: -33648.173568
EM: Round [28] log likelihood: -33648.158702
EM: Round [29] log likelihood: -33648.144560
EM: Round [30] log likelihood: -33648.131099
EM: Round [31] log likelihood: -33648.118284
EM: Round [32] log likelihood: -33648.106080
EM: Round [33] log likelihood: -33648.094453
EM: Round [34] log likelihood: -33648.083374
EM: Round [35] log likelihood: -33648.072814
EM: Round [36] log likelihood: -33648.062746
EM: Round [37] log likelihood: -33648.053145
EM: Round [38] log likelihood: -33648.043987
EM: Round [39] log likelihood: -33648.035249
EM: Round [40] log likelihood: -33648.026912
EM: Round [41] log likelihood: -33648.018954
EM: Round [42] log likelihood: -33648.011357
EM: Round [43] log likelihood: -33648.004104
EM: Round [44] log likelihood: -33647.997178
EM: Round [45] log likelihood: -33647.990563
EM: Round [46] log likelihood: -33647.984244
EM: Round [47] log likelihood: -33647.978207
EM: Round [48] log likelihood: -33647.972438
EM: Round [49] log likelihood: -33647.966925
EM: Round [50] log likelihood: -33647.961657
EM: Round [51] log likelihood: -33647.956620
EM: Round [52] log likelihood: -33647.951806
EM: Round [53] log likelihood: -33647.947203
EM: Round [54] log likelihood: -33647.942802
EM: Round [55] log likelihood: -33647.938593
EM: Round [56] log likelihood: -33647.934567
EM: Round [57] log likelihood: -33647.930718
EM: Round [58] log likelihood: -33647.927035
EM: Round [59] log likelihood: -33647.923512
EM: Round [60] log likelihood: -33647.920142
EM: Round [61] log likelihood: -33647.916918
EM: Round [62] log likelihood: -33647.913832
EM: Round [63] log likelihood: -33647.910880
EM: Round [64] log likelihood: -33647.908055
EM: Round [65] log likelihood: -33647.905352
EM: Round [66] log likelihood: -33647.902764
EM: Round [67] log likelihood: -33647.900287
EM: Round [68] log likelihood: -33647.897917
EM: Round [69] log likelihood: -33647.895648
EM: Round [70] log likelihood: -33647.893476
EM: Round [71] log likelihood: -33647.891396
EM: Round [72] log likelihood: -33647.889405
EM: Round [73] log likelihood: -33647.887499
EM: Round [74] log likelihood: -33647.885674
EM: Round [75] log likelihood: -33647.883927
EM: Round [76] log likelihood: -33647.882254
EM: Round [77] log likelihood: -33647.880652
EM: Round [78] log likelihood: -33647.879118
EM: Round [79] log likelihood: -33647.877649
EM: Round [80] log likelihood: -33647.876242
EM: Round [81] log likelihood: -33647.874895
EM: Round [82] log likelihood: -33647.873605
EM: Round [83] log likelihood: -33647.872369
EM: Round [84] log likelihood: -33647.871185
EM: Round [85] log likelihood: -33647.870052
EM: Round [86] log likelihood: -33647.868966
EM: Round [87] log likelihood: -33647.867926
EM: Round [88] log likelihood: -33647.866930
EM: Round [89] log likelihood: -33647.865976
EM: Round [90] log likelihood: -33647.865062
EM: Round [91] log likelihood: -33647.864186
EM: Round [92] log likelihood: -33647.863348
EM: Round [93] log likelihood: -33647.862544
EM: Round [94] log likelihood: -33647.861775
EM: Round [95] log likelihood: -33647.861038
EM: Round [96] log likelihood: -33647.860331
EM: Round [97] log likelihood: -33647.859655
EM: Round [98] log likelihood: -33647.859007
EM: Round [99] log likelihood: -33647.858386
EM: Round [100] log likelihood: -33647.857791
EM: Round [101] log likelihood: -33647.857221
EM: Round [102] log likelihood: -33647.856675
EM: Round [103] log likelihood: -33647.856151
EM: Round [104] log likelihood: -33647.855650
EM: Round [105] log likelihood: -33647.855170
EM: Round [106] log likelihood: -33647.854710
EM: Round [107] log likelihood: -33647.854269
EM: Round [108] log likelihood: -33647.853846
EM: Round [109] log likelihood: -33647.853442
EM: Round [110] log likelihood: -33647.853054
EM: Round [111] log likelihood: -33647.852682
EM: Round [112] log likelihood: -33647.852326
EM: Round [113] log likelihood: -33647.851985
EM: Round [114] log likelihood: -33647.851658
EM: Round [115] log likelihood: -33647.851345
EM: Round [116] log likelihood: -33647.851045
EM: Round [117] log likelihood: -33647.850758
EM: Round [118] log likelihood: -33647.850482
EM: Round [119] log likelihood: -33647.850218
EM: Round [120] log likelihood: -33647.849965
EM: Round [121] log likelihood: -33647.849723
EM: Round [122] log likelihood: -33647.849490
EM: Round [123] log likelihood: -33647.849268
EM: Round [124] log likelihood: -33647.849055
EM: Round [125] log likelihood: -33647.848850
EM: Round [126] log likelihood: -33647.848654
EM: Round [127] log likelihood: -33647.848467
EM: Round [128] log likelihood: -33647.848287
EM: Round [129] log likelihood: -33647.848115
EM: Round [130] log likelihood: -33647.847950
EM: Round [131] log likelihood: -33647.847791
EM: Round [132] log likelihood: -33647.847640
EM: Round [133] log likelihood: -33647.847494
EM: Round [134] log likelihood: -33647.847355
EM: Round [135] log likelihood: -33647.847222
EM: Round [136] log likelihood: -33647.847094
EM: Round [137] log likelihood: -33647.846971
EM: Round [138] log likelihood: -33647.846854
EM: Round [139] log likelihood: -33647.846741
EM: Round [140] log likelihood: -33647.846634
EM: Round [141] log likelihood: -33647.846530
EM: Round [142] log likelihood: -33647.846431
EM: Stopping iterations at round 142 due to insufficient improvement in likelihood.
[bam_sort_core] merging from 0 files and 8 in-memory blocks...
-extracting read coordinates from /tmp/nxf.zgRxuE7wfG/aih-tih-sc-f6bb6f-R1_A23YTGFLT4_1.consolidated.bam into /tmp/nxf.zgRxuE7wfG/aih-tih-sc-f6bb6f-R1_A23YTGFLT4_1.consolidated.bam.read_coords

CMD: touch /tmp/nxf.zgRxuE7wfG/aih-tih-sc-f6bb6f-R1_A23YTGFLT4_1.consolidated.bam.read_coords.ok
CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k2,2 -k4,4n /tmp/nxf.zgRxuE7wfG/aih-tih-sc-f6bb6f-R1_A23YTGFLT4_1.consolidated.bam.read_coords > /tmp/nxf.zgRxuE7wfG/aih-tih-sc-f6bb6f-R1_A23YTGFLT4_1.consolidated.bam.read_coords.sort_by_readname
CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k3,3n /tmp/nxf.zgRxuE7wfG/aih-tih-sc-f6bb6f-R1_A23YTGFLT4_1.consolidated.bam.frag_coords > /tmp/nxf.zgRxuE7wfG/aih-tih-sc-f6bb6f-R1_A23YTGFLT4_1.consolidated.bam.frag_coords.coord_sorted
CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.zgRxuE7wfG/fi_workdir/aih-tih-sc-f6bb6f-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo --genome_lib_dir ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.zgRxuE7wfG/fi_workdir/aih-tih-sc-f6bb6f-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter  --genome_lib_dir ctat_genome_lib_build_dir  --max_promiscuity 10  --min_pct_dom_promiscuity 50 
CMD: cp /tmp/nxf.zgRxuE7wfG/fi_workdir/aih-tih-sc-f6bb6f-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter.post_promisc_filter /tmp/nxf.zgRxuE7wfG/aih-tih-sc-f6bb6f-R1_A23YTGFLT4_1.post_blast_and_promiscuity_filter
-done, see /tmp/nxf.zgRxuE7wfG/aih-tih-sc-f6bb6f-R1_A23YTGFLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass
EM: Starting log likelihood: -31930.784400
EM: Round [1] log likelihood: -31921.002353
EM: Round [2] log likelihood: -31920.662164
EM: Round [3] log likelihood: -31920.639327
EM: Round [4] log likelihood: -31920.637324
EM: Round [5] log likelihood: -31920.637145
EM: Round [6] log likelihood: -31920.637129
EM: Stopping iterations at round 6 due to insufficient improvement in likelihood.
-total frags in /tmp/nxf.zgRxuE7wfG/aih-tih-sc-f6bb6f-R1_A23YTGFLT4_1_1.fastp.fastq.gz: 296799642
Warning - not locating file: /tmp/nxf.zgRxuE7wfG/aih-tih-sc-f6bb6f-R1_A23YTGFLT4_1.gmap_trinity_GG.fusions.gff3.bed
WARNING, no entry stored in dbm for [ENSG00000259673.6]
WARNING, no entry stored in dbm for [ENSG00000285331.2]
WARNING, no entry stored in dbm for [ENSG00000189136.9]
WARNING, no entry stored in dbm for [ENSG00000232000.3]
WARNING, no entry stored in dbm for [ENSG00000232000.3]
WARNING, no entry stored in dbm for [ENSG00000232000.3]
WARNING, no entry stored in dbm for [ENSG00000232000.3]
WARNING, no entry stored in dbm for [ENSG00000232000.3]
WARNING, no entry stored in dbm for [ENSG00000232000.3]
WARNING, no entry stored in dbm for [ENSG00000232000.3]
WARNING, no entry stored in dbm for [ENSG00000232000.3]
WARNING, no entry stored in dbm for [ENSG00000232000.3]
WARNING, no entry stored in dbm for [ENSG00000232000.3]
WARNING, no entry stored in dbm for [ENSG00000285866.1]
WARNING, no entry stored in dbm for [ENSG00000285866.1]
WARNING, no entry stored in dbm for [ENSG00000285866.1]
WARNING, no entry stored in dbm for [ENSG00000280136.2]
WARNING, no entry stored in dbm for [ENSG00000259360.1]
WARNING, no entry stored in dbm for [ENSG00000259360.1]
WARNING, no entry stored in dbm for [ENSG00000259360.1]
WARNING, no entry stored in dbm for [ENSG00000226049.3]
WARNING, no entry stored in dbm for [ENSG00000260404.3]
WARNING, no entry stored in dbm for [ENSG00000260126.2]
WARNING, no entry stored in dbm for [ENSG00000254681.6]
WARNING, no entry stored in dbm for [ENSG00000258932.5]
WARNING, no entry stored in dbm for [ENSG00000258932.5]
WARNING, no entry stored in dbm for [ENSG00000286406.1]
WARNING, no entry stored in dbm for [ENSG00000280441.3]
WARNING, no entry stored in dbm for [ENSG00000280441.3]
WARNING, no entry stored in dbm for [ENSG00000280441.3]
WARNING, no entry stored in dbm for [ENSG00000280441.3]
WARNING, no entry stored in dbm for [ENSG00000280441.3]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000234426.3]
WARNING, no entry stored in dbm for [ENSG00000234426.3]
WARNING, no entry stored in dbm for [ENSG00000234426.3]
WARNING, no entry stored in dbm for [ENSG00000234426.3]
WARNING, no entry stored in dbm for [ENSG00000234426.3]
WARNING, no entry stored in dbm for [ENSG00000188850.9]
WARNING, no entry stored in dbm for [ENSG00000188850.9]
WARNING, no entry stored in dbm for [ENSG00000188850.9]
WARNING, no entry stored in dbm for [ENSG00000259848.9]
WARNING, no entry stored in dbm for [ENSG00000242193.11]
WARNING, no entry stored in dbm for [ENSG00000242193.11]
WARNING, no entry stored in dbm for [ENSG00000242193.11]
WARNING, no entry stored in dbm for [ENSG00000242193.11]
WARNING, no entry stored in dbm for [ENSG00000285533.2]
WARNING, no entry stored in dbm for [ENSG00000253197.5]
WARNING, no entry stored in dbm for [ENSG00000251396.7]
WARNING, no entry stored in dbm for [ENSG00000251396.7]
WARNING, no entry stored in dbm for [ENSG00000259180.1]
WARNING, no entry stored in dbm for [ENSG00000203413.3]
WARNING, no entry stored in dbm for [ENSG00000225325.1]
ls: cannot access 'IGV_inputs': No such file or directory