File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/09e394ee4acb6d159f80487a7dca35/.command.log
Size
9.8 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-b8457f-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/5ec6f5588b18963e5f21eace2e271d/aih-tih-sc-b8457f-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/09e394ee4acb6d159f80487a7dca35/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e3/4437c35e11e269952b8a7fe3e84d41/aih-tih-sc-b8457f-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/09e394ee4acb6d159f80487a7dca35/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
TP53--ARHGAP44
starfusion
arriba
NOL10--ASAP2
starfusion
arriba
PUM2--MBOAT2
starfusion
arriba
COX7A2L--SPRED2
starfusion
arriba
ARHGAP44--TP53
starfusion
arriba
ALMS1--MIR3681HG
starfusion
arriba
SPTBN1--EHBP1
starfusion
arriba
NBPF10--CD160
starfusion
arriba
STAMBP--SPRED2
starfusion
arriba
USP34--NOTO
starfusion
arriba
TLK2P1--AC110079.1
starfusion
AC136431.1--PKD1P5
starfusion
TLK2--AC240565.1
starfusion
SERTAD2--NBAS
starfusion
arriba
WDR43--EML4-AS1
starfusion
arriba
STX16--NPEPL1
starfusion
arriba
ZNF519--ANKRD20A11P
starfusion
HSD17B4--MT-RNR2
starfusion
PRKCE--AC092155.1
starfusion
arriba
RCN3--FCGRT
starfusion
CRIM1--SERTAD2
arriba
CRIM1--RN7SL341P
arriba
NOTCH1--LINC01451
arriba
NOTCH1--AL590226.1
arriba
LDAH--AC013460.1
arriba
LDAH--RNU6ATAC37P
arriba
TCF7L2--AC010998.3
arriba
TCF7L2--RPL19P16
arriba
TVP23C--CDRT4
arriba
MBOAT2--AC093702.1
arriba
MBOAT2--LINC01121
arriba
NOTCH2NLA--CD160
arriba
CRYZL2P--SEC16B
arriba
SPTBN1--AC092155.1
arriba
RN7SL341P--NBAS
arriba
TCF7L2--AC010998.1
arriba
EXOC6B--SPRED2
arriba
VSNL1--RN7SKP27
arriba
VSNL1--AC018467.1
arriba
SPRED2--LINC01115
arriba
SPRED2--LINC01939
arriba
AC015911.9--SLFN12L
arriba
AKR1C6P--AKR1C2
arriba
U8--AKR1C2
arriba

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Processing TP53--ARHGAP44:   0%|          | 0/44 [00:00<?, ?it/s]
Processing TP53--ARHGAP44:   2%|▏         | 1/44 [00:00<00:04,  9.14it/s]
Processing NOL10--ASAP2:   2%|▏         | 1/44 [00:00<00:04,  9.14it/s]  
Processing NOL10--ASAP2:   5%|▍         | 2/44 [00:00<00:04,  9.41it/s]
Processing PUM2--MBOAT2:   5%|▍         | 2/44 [00:00<00:04,  9.41it/s]
Processing PUM2--MBOAT2:   7%|▋         | 3/44 [00:00<00:04,  9.50it/s]
Processing COX7A2L--SPRED2:   7%|▋         | 3/44 [00:00<00:04,  9.50it/s]
Processing COX7A2L--SPRED2:   9%|▉         | 4/44 [00:00<00:04,  9.54it/s]
Processing ARHGAP44--TP53:   9%|▉         | 4/44 [00:00<00:04,  9.54it/s] 
Processing ARHGAP44--TP53:  11%|█▏        | 5/44 [00:00<00:04,  9.56it/s]
Processing ALMS1--MIR3681HG:  11%|█▏        | 5/44 [00:00<00:04,  9.56it/s]
Processing ALMS1--MIR3681HG:  14%|█▎        | 6/44 [00:00<00:03,  9.58it/s]
Processing SPTBN1--EHBP1:  14%|█▎        | 6/44 [00:00<00:03,  9.58it/s]   
Processing SPTBN1--EHBP1:  16%|█▌        | 7/44 [00:00<00:03,  9.59it/s]
Processing NBPF10--CD160:  16%|█▌        | 7/44 [00:00<00:03,  9.59it/s]
Processing NBPF10--CD160:  18%|█▊        | 8/44 [00:00<00:03,  9.60it/s]
Processing STAMBP--SPRED2:  18%|█▊        | 8/44 [00:00<00:03,  9.60it/s]
Processing STAMBP--SPRED2:  20%|██        | 9/44 [00:00<00:03,  9.60it/s]
Processing USP34--NOTO:  20%|██        | 9/44 [00:00<00:03,  9.60it/s]   
Processing USP34--NOTO:  23%|██▎       | 10/44 [00:01<00:03,  9.60it/s]
Processing TLK2P1--AC110079.1:  23%|██▎       | 10/44 [00:01<00:03,  9.60it/s]
Processing TLK2P1--AC110079.1:  25%|██▌       | 11/44 [00:01<00:03,  9.61it/s]
Processing AC136431.1--PKD1P5:  25%|██▌       | 11/44 [00:01<00:03,  9.61it/s]
Processing AC136431.1--PKD1P5:  27%|██▋       | 12/44 [00:01<00:03,  9.61it/s]
Processing TLK2--AC240565.1:  27%|██▋       | 12/44 [00:01<00:03,  9.61it/s]  
Processing TLK2--AC240565.1:  30%|██▉       | 13/44 [00:01<00:03,  9.62it/s]
Processing SERTAD2--NBAS:  30%|██▉       | 13/44 [00:01<00:03,  9.62it/s]   
Processing SERTAD2--NBAS:  32%|███▏      | 14/44 [00:01<00:03,  9.62it/s]
Processing WDR43--EML4-AS1:  32%|███▏      | 14/44 [00:01<00:03,  9.62it/s]
Processing WDR43--EML4-AS1:  34%|███▍      | 15/44 [00:01<00:03,  9.62it/s]
Processing STX16--NPEPL1:  34%|███▍      | 15/44 [00:01<00:03,  9.62it/s]  
Processing STX16--NPEPL1:  36%|███▋      | 16/44 [00:01<00:02,  9.62it/s]
Processing ZNF519--ANKRD20A11P:  36%|███▋      | 16/44 [00:01<00:02,  9.62it/s]
Processing ZNF519--ANKRD20A11P:  39%|███▊      | 17/44 [00:01<00:02,  9.62it/s]
Processing HSD17B4--MT-RNR2:  39%|███▊      | 17/44 [00:01<00:02,  9.62it/s]   
Processing HSD17B4--MT-RNR2:  41%|████      | 18/44 [00:01<00:02,  9.62it/s]
Processing PRKCE--AC092155.1:  41%|████      | 18/44 [00:01<00:02,  9.62it/s]
Processing PRKCE--AC092155.1:  43%|████▎     | 19/44 [00:01<00:02,  9.62it/s]
Processing RCN3--FCGRT:  43%|████▎     | 19/44 [00:01<00:02,  9.62it/s]      
Processing RCN3--FCGRT:  45%|████▌     | 20/44 [00:02<00:02,  9.62it/s]
Processing CRIM1--SERTAD2:  45%|████▌     | 20/44 [00:02<00:02,  9.62it/s]
Processing CRIM1--SERTAD2:  48%|████▊     | 21/44 [00:02<00:02,  9.62it/s]
Processing CRIM1--RN7SL341P:  48%|████▊     | 21/44 [00:02<00:02,  9.62it/s]
Processing CRIM1--RN7SL341P:  50%|█████     | 22/44 [00:02<00:02,  9.62it/s]
Processing NOTCH1--LINC01451:  50%|█████     | 22/44 [00:02<00:02,  9.62it/s]
Processing NOTCH1--LINC01451:  52%|█████▏    | 23/44 [00:02<00:02,  9.62it/s]
Processing NOTCH1--AL590226.1:  52%|█████▏    | 23/44 [00:02<00:02,  9.62it/s]
Processing NOTCH1--AL590226.1:  55%|█████▍    | 24/44 [00:02<00:02,  9.62it/s]
Processing LDAH--AC013460.1:  55%|█████▍    | 24/44 [00:02<00:02,  9.62it/s]  
Processing LDAH--AC013460.1:  57%|█████▋    | 25/44 [00:02<00:01,  9.62it/s]
Processing LDAH--RNU6ATAC37P:  57%|█████▋    | 25/44 [00:02<00:01,  9.62it/s]
Processing LDAH--RNU6ATAC37P:  59%|█████▉    | 26/44 [00:02<00:01,  9.63it/s]
Processing TCF7L2--AC010998.3:  59%|█████▉    | 26/44 [00:02<00:01,  9.63it/s]
Processing TCF7L2--AC010998.3:  61%|██████▏   | 27/44 [00:02<00:01,  9.63it/s]
Processing TCF7L2--RPL19P16:  61%|██████▏   | 27/44 [00:02<00:01,  9.63it/s]  
Processing TCF7L2--RPL19P16:  64%|██████▎   | 28/44 [00:02<00:01,  9.63it/s]
Processing TVP23C--CDRT4:  64%|██████▎   | 28/44 [00:02<00:01,  9.63it/s]   
Processing TVP23C--CDRT4:  66%|██████▌   | 29/44 [00:03<00:01,  9.63it/s]
Processing MBOAT2--AC093702.1:  66%|██████▌   | 29/44 [00:03<00:01,  9.63it/s]
Processing MBOAT2--AC093702.1:  68%|██████▊   | 30/44 [00:03<00:01,  9.63it/s]
Processing MBOAT2--LINC01121:  68%|██████▊   | 30/44 [00:03<00:01,  9.63it/s] 
Processing MBOAT2--LINC01121:  70%|███████   | 31/44 [00:03<00:01,  9.63it/s]
Processing NOTCH2NLA--CD160:  70%|███████   | 31/44 [00:03<00:01,  9.63it/s] 
Processing NOTCH2NLA--CD160:  73%|███████▎  | 32/44 [00:03<00:01,  9.63it/s]
Processing CRYZL2P--SEC16B:  73%|███████▎  | 32/44 [00:03<00:01,  9.63it/s] 
Processing CRYZL2P--SEC16B:  75%|███████▌  | 33/44 [00:03<00:01,  9.63it/s]
Processing SPTBN1--AC092155.1:  75%|███████▌  | 33/44 [00:03<00:01,  9.63it/s]
Processing SPTBN1--AC092155.1:  77%|███████▋  | 34/44 [00:03<00:01,  9.63it/s]
Processing RN7SL341P--NBAS:  77%|███████▋  | 34/44 [00:03<00:01,  9.63it/s]   
Processing RN7SL341P--NBAS:  80%|███████▉  | 35/44 [00:03<00:00,  9.63it/s]
Processing TCF7L2--AC010998.1:  80%|███████▉  | 35/44 [00:03<00:00,  9.63it/s]
Processing TCF7L2--AC010998.1:  82%|████████▏ | 36/44 [00:03<00:00,  9.63it/s]
Processing EXOC6B--SPRED2:  82%|████████▏ | 36/44 [00:03<00:00,  9.63it/s]    
Processing EXOC6B--SPRED2:  84%|████████▍ | 37/44 [00:03<00:00,  9.62it/s]
Processing VSNL1--RN7SKP27:  84%|████████▍ | 37/44 [00:03<00:00,  9.62it/s]
Processing VSNL1--RN7SKP27:  86%|████████▋ | 38/44 [00:03<00:00,  9.63it/s]
Processing VSNL1--AC018467.1:  86%|████████▋ | 38/44 [00:03<00:00,  9.63it/s]
Processing VSNL1--AC018467.1:  89%|████████▊ | 39/44 [00:04<00:00,  9.62it/s]
Processing SPRED2--LINC01115:  89%|████████▊ | 39/44 [00:04<00:00,  9.62it/s]
Processing SPRED2--LINC01115:  91%|█████████ | 40/44 [00:04<00:00,  9.63it/s]
Processing SPRED2--LINC01939:  91%|█████████ | 40/44 [00:04<00:00,  9.63it/s]
Processing SPRED2--LINC01939:  93%|█████████▎| 41/44 [00:04<00:00,  9.63it/s]
Processing AC015911.9--SLFN12L:  93%|█████████▎| 41/44 [00:04<00:00,  9.63it/s]
Processing AC015911.9--SLFN12L:  95%|█████████▌| 42/44 [00:04<00:00,  9.62it/s]
Processing AKR1C6P--AKR1C2:  95%|█████████▌| 42/44 [00:04<00:00,  9.62it/s]    
Processing AKR1C6P--AKR1C2:  98%|█████████▊| 43/44 [00:04<00:00,  9.62it/s]
Processing U8--AKR1C2:  98%|█████████▊| 43/44 [00:04<00:00,  9.62it/s]     
Processing U8--AKR1C2: 100%|██████████| 44/44 [00:04<00:00,  9.62it/s]
Processing U8--AKR1C2: 100%|██████████| 44/44 [00:04<00:00,  9.61it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory