File Info

Filename
aih-tih-sc-24ecfe-R1_A23YTGFLT4_1.Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/efedf9c256727b30ecd682c62a130f/aih-tih-sc-24ecfe-R1_A23YTGFLT4_1.Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 07:26:04
                             Started mapping on |	Jun 08 07:27:58
                                    Finished on |	Jun 08 07:33:46
       Mapping speed, Million of reads per hour |	341.71

                          Number of input reads |	33031530
                      Average input read length |	190
                                    UNIQUE READS:
                   Uniquely mapped reads number |	30464529
                        Uniquely mapped reads % |	92.23%
                          Average mapped length |	189.24
                       Number of splices: Total |	20590787
            Number of splices: Annotated (sjdb) |	20179510
                       Number of splices: GT/AG |	20414978
                       Number of splices: GC/AG |	117004
                       Number of splices: AT/AC |	11669
               Number of splices: Non-canonical |	47136
                      Mismatch rate per base, % |	1.11%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.00
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.57
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	1555823
             % of reads mapped to multiple loci |	4.71%
        Number of reads mapped to too many loci |	38765
             % of reads mapped to too many loci |	0.12%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	219856
       % of reads unmapped: too many mismatches |	0.67%
            Number of reads unmapped: too short |	377389
                 % of reads unmapped: too short |	1.14%
                Number of reads unmapped: other |	37546
                     % of reads unmapped: other |	0.11%
                                  CHIMERIC READS:
                       Number of chimeric reads |	543024
                            % of chimeric reads |	1.64%