File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/59a0961e399550214f8a152fb8e555/.command.log
Size
10.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-7fa0fb-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/94d57d89cf9d312a9e9a15767fd260/aih-tih-sc-7fa0fb-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/26/2c569e8bd00b7107d669a48e5a03d4/aih-tih-sc-7fa0fb-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/59a0961e399550214f8a152fb8e555/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/59a0961e399550214f8a152fb8e555/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
RPS11--UQCRFS1
starfusion
arriba
FBXL20--AC068413.1
starfusion
arriba
B4GALT1--BRINP1
starfusion
arriba
TRPS1--AC034268.2
starfusion
arriba
CLINT1--TTC1
starfusion
arriba
CLTC--ZFPM2
starfusion
BCAS3--CA10
starfusion
arriba
SAMD12--CA10
starfusion
arriba
SAMD12--AC034154.1
starfusion
arriba
PSMD11--RIMS2
starfusion
arriba
NFX1--GSN
starfusion
arriba
SAMD12--STPG2
starfusion
CEP43--ERBB4
starfusion
AC060809.1--ERBB4
starfusion
VPS13B--UBR5-AS1
starfusion
TLK2P1--AC110079.1
starfusion
SAMD12--ZNF704
starfusion
NSD3--ADAM9
starfusion
LRP12--LINC01837
starfusion
LHX2--GGTA1
starfusion
arriba
NPHP3--ACAD11
arriba
USP32--MED30
arriba
USP32--EXT1
arriba
CASC3--WIPF2
arriba
ZNF394--TAC1
arriba
ZNF394--ASNS
arriba
CACNB1--TRPS1
arriba
CACNB1--LINC00536
arriba
ST6GALNAC6--AL031073.2
arriba
ST6GALNAC6--SPANXN4
arriba
TVP23C--CDRT4
arriba
FBXL20--LINC00536
arriba
TAOK1--ABRA
arriba
TAOK1--AP003789.1
arriba
RRM2B--VPS13B
arriba
VMP1--SRCIN1
arriba
LRP12--AC106881.1
arriba
LRP12--RPL30P6
arriba
ST6GALNAC4--ST6GALNAC4
arriba
DPYS--GRID2
arriba
IKZF3--TUBB4BP6
arriba
IKZF3--BRINP1
arriba
BCAS3--RHBDF2
arriba
BCAS3--CYGB
arriba
PPP4R1--RNU6-245P
arriba
PPP4R1--RPL31P63
arriba
ASTN2--UGCG
arriba
ASTN2--RNU6-710P
arriba

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Processing RPS11--UQCRFS1:   0%|          | 0/48 [00:00<?, ?it/s]
Processing RPS11--UQCRFS1:   2%|▏         | 1/48 [00:00<00:05,  9.19it/s]
Processing FBXL20--AC068413.1:   2%|▏         | 1/48 [00:00<00:05,  9.19it/s]
Processing FBXL20--AC068413.1:   4%|▍         | 2/48 [00:00<00:04,  9.27it/s]
Processing B4GALT1--BRINP1:   4%|▍         | 2/48 [00:00<00:04,  9.27it/s]   
Processing B4GALT1--BRINP1:   6%|▋         | 3/48 [00:00<00:04,  9.36it/s]
Processing TRPS1--AC034268.2:   6%|▋         | 3/48 [00:00<00:04,  9.36it/s]
Processing TRPS1--AC034268.2:   8%|▊         | 4/48 [00:00<00:04,  9.42it/s]
Processing CLINT1--TTC1:   8%|▊         | 4/48 [00:00<00:04,  9.42it/s]     
Processing CLINT1--TTC1:  10%|█         | 5/48 [00:00<00:04,  9.44it/s]
Processing CLTC--ZFPM2:  10%|█         | 5/48 [00:00<00:04,  9.44it/s] 
Processing CLTC--ZFPM2:  12%|█▎        | 6/48 [00:00<00:04,  9.46it/s]
Processing BCAS3--CA10:  12%|█▎        | 6/48 [00:00<00:04,  9.46it/s]
Processing BCAS3--CA10:  15%|█▍        | 7/48 [00:00<00:04,  9.47it/s]
Processing SAMD12--CA10:  15%|█▍        | 7/48 [00:00<00:04,  9.47it/s]
Processing SAMD12--CA10:  17%|█▋        | 8/48 [00:00<00:04,  9.48it/s]
Processing SAMD12--AC034154.1:  17%|█▋        | 8/48 [00:00<00:04,  9.48it/s]
Processing SAMD12--AC034154.1:  19%|█▉        | 9/48 [00:00<00:04,  9.48it/s]
Processing PSMD11--RIMS2:  19%|█▉        | 9/48 [00:00<00:04,  9.48it/s]     
Processing PSMD11--RIMS2:  21%|██        | 10/48 [00:01<00:04,  9.49it/s]
Processing NFX1--GSN:  21%|██        | 10/48 [00:01<00:04,  9.49it/s]    
Processing NFX1--GSN:  23%|██▎       | 11/48 [00:01<00:03,  9.49it/s]
Processing SAMD12--STPG2:  23%|██▎       | 11/48 [00:01<00:03,  9.49it/s]
Processing SAMD12--STPG2:  25%|██▌       | 12/48 [00:01<00:03,  9.43it/s]
Processing CEP43--ERBB4:  25%|██▌       | 12/48 [00:01<00:03,  9.43it/s] 
Processing CEP43--ERBB4:  27%|██▋       | 13/48 [00:01<00:03,  9.41it/s]
Processing AC060809.1--ERBB4:  27%|██▋       | 13/48 [00:01<00:03,  9.41it/s]
Processing AC060809.1--ERBB4:  29%|██▉       | 14/48 [00:01<00:03,  9.39it/s]
Processing VPS13B--UBR5-AS1:  29%|██▉       | 14/48 [00:01<00:03,  9.39it/s] 
Processing VPS13B--UBR5-AS1:  31%|███▏      | 15/48 [00:01<00:03,  9.38it/s]
Processing TLK2P1--AC110079.1:  31%|███▏      | 15/48 [00:01<00:03,  9.38it/s]
Processing TLK2P1--AC110079.1:  33%|███▎      | 16/48 [00:01<00:03,  9.36it/s]
Processing SAMD12--ZNF704:  33%|███▎      | 16/48 [00:01<00:03,  9.36it/s]    
Processing SAMD12--ZNF704:  35%|███▌      | 17/48 [00:01<00:03,  9.34it/s]
Processing NSD3--ADAM9:  35%|███▌      | 17/48 [00:01<00:03,  9.34it/s]   
Processing NSD3--ADAM9:  38%|███▊      | 18/48 [00:01<00:03,  9.33it/s]
Processing LRP12--LINC01837:  38%|███▊      | 18/48 [00:01<00:03,  9.33it/s]
Processing LRP12--LINC01837:  40%|███▉      | 19/48 [00:02<00:03,  9.32it/s]
Processing LHX2--GGTA1:  40%|███▉      | 19/48 [00:02<00:03,  9.32it/s]     
Processing LHX2--GGTA1:  42%|████▏     | 20/48 [00:02<00:03,  9.33it/s]
Processing NPHP3--ACAD11:  42%|████▏     | 20/48 [00:02<00:03,  9.33it/s]
Processing NPHP3--ACAD11:  44%|████▍     | 21/48 [00:02<00:02,  9.33it/s]
Processing USP32--MED30:  44%|████▍     | 21/48 [00:02<00:02,  9.33it/s] 
Processing USP32--MED30:  46%|████▌     | 22/48 [00:02<00:02,  9.34it/s]
Processing USP32--EXT1:  46%|████▌     | 22/48 [00:02<00:02,  9.34it/s] 
Processing USP32--EXT1:  48%|████▊     | 23/48 [00:02<00:02,  9.33it/s]
Processing CASC3--WIPF2:  48%|████▊     | 23/48 [00:02<00:02,  9.33it/s]
Processing CASC3--WIPF2:  50%|█████     | 24/48 [00:02<00:02,  9.34it/s]
Processing ZNF394--TAC1:  50%|█████     | 24/48 [00:02<00:02,  9.34it/s]
Processing ZNF394--TAC1:  52%|█████▏    | 25/48 [00:02<00:02,  9.39it/s]
Processing ZNF394--ASNS:  52%|█████▏    | 25/48 [00:02<00:02,  9.39it/s]
Processing ZNF394--ASNS:  54%|█████▍    | 26/48 [00:02<00:02,  9.38it/s]
Processing CACNB1--TRPS1:  54%|█████▍    | 26/48 [00:02<00:02,  9.38it/s]
Processing CACNB1--TRPS1:  56%|█████▋    | 27/48 [00:02<00:02,  9.39it/s]
Processing CACNB1--LINC00536:  56%|█████▋    | 27/48 [00:02<00:02,  9.39it/s]
Processing CACNB1--LINC00536:  58%|█████▊    | 28/48 [00:02<00:02,  9.41it/s]
Processing ST6GALNAC6--AL031073.2:  58%|█████▊    | 28/48 [00:02<00:02,  9.41it/s]
Processing ST6GALNAC6--AL031073.2:  60%|██████    | 29/48 [00:03<00:02,  9.43it/s]
Processing ST6GALNAC6--SPANXN4:  60%|██████    | 29/48 [00:03<00:02,  9.43it/s]   
Processing ST6GALNAC6--SPANXN4:  62%|██████▎   | 30/48 [00:03<00:01,  9.44it/s]
Processing TVP23C--CDRT4:  62%|██████▎   | 30/48 [00:03<00:01,  9.44it/s]      
Processing TVP23C--CDRT4:  65%|██████▍   | 31/48 [00:03<00:01,  9.45it/s]
Processing FBXL20--LINC00536:  65%|██████▍   | 31/48 [00:03<00:01,  9.45it/s]
Processing FBXL20--LINC00536:  67%|██████▋   | 32/48 [00:03<00:01,  9.45it/s]
Processing TAOK1--ABRA:  67%|██████▋   | 32/48 [00:03<00:01,  9.45it/s]      
Processing TAOK1--ABRA:  69%|██████▉   | 33/48 [00:03<00:01,  9.46it/s]
Processing TAOK1--AP003789.1:  69%|██████▉   | 33/48 [00:03<00:01,  9.46it/s]
Processing TAOK1--AP003789.1:  71%|███████   | 34/48 [00:03<00:01,  9.47it/s]
Processing RRM2B--VPS13B:  71%|███████   | 34/48 [00:03<00:01,  9.47it/s]    
Processing RRM2B--VPS13B:  73%|███████▎  | 35/48 [00:03<00:01,  9.46it/s]
Processing VMP1--SRCIN1:  73%|███████▎  | 35/48 [00:03<00:01,  9.46it/s] 
Processing VMP1--SRCIN1:  75%|███████▌  | 36/48 [00:03<00:01,  9.46it/s]
Processing LRP12--AC106881.1:  75%|███████▌  | 36/48 [00:03<00:01,  9.46it/s]
Processing LRP12--AC106881.1:  77%|███████▋  | 37/48 [00:03<00:01,  9.47it/s]
Processing LRP12--RPL30P6:  77%|███████▋  | 37/48 [00:03<00:01,  9.47it/s]   
Processing LRP12--RPL30P6:  79%|███████▉  | 38/48 [00:04<00:01,  9.47it/s]
Processing ST6GALNAC4--ST6GALNAC4:  79%|███████▉  | 38/48 [00:04<00:01,  9.47it/s]
Processing ST6GALNAC4--ST6GALNAC4:  81%|████████▏ | 39/48 [00:04<00:00,  9.47it/s]
Processing DPYS--GRID2:  81%|████████▏ | 39/48 [00:04<00:00,  9.47it/s]           
Processing DPYS--GRID2:  83%|████████▎ | 40/48 [00:04<00:00,  9.40it/s]
Processing IKZF3--TUBB4BP6:  83%|████████▎ | 40/48 [00:04<00:00,  9.40it/s]
Processing IKZF3--TUBB4BP6:  85%|████████▌ | 41/48 [00:04<00:00,  9.41it/s]
Processing IKZF3--BRINP1:  85%|████████▌ | 41/48 [00:04<00:00,  9.41it/s]  
Processing IKZF3--BRINP1:  88%|████████▊ | 42/48 [00:04<00:00,  9.43it/s]
Processing BCAS3--RHBDF2:  88%|████████▊ | 42/48 [00:04<00:00,  9.43it/s]
Processing BCAS3--RHBDF2:  90%|████████▉ | 43/48 [00:04<00:00,  9.39it/s]
Processing BCAS3--CYGB:  90%|████████▉ | 43/48 [00:04<00:00,  9.39it/s]  
Processing BCAS3--CYGB:  92%|█████████▏| 44/48 [00:04<00:00,  9.42it/s]
Processing PPP4R1--RNU6-245P:  92%|█████████▏| 44/48 [00:04<00:00,  9.42it/s]
Processing PPP4R1--RNU6-245P:  94%|█████████▍| 45/48 [00:04<00:00,  9.44it/s]
Processing PPP4R1--RPL31P63:  94%|█████████▍| 45/48 [00:04<00:00,  9.44it/s] 
Processing PPP4R1--RPL31P63:  96%|█████████▌| 46/48 [00:04<00:00,  9.44it/s]
Processing ASTN2--UGCG:  96%|█████████▌| 46/48 [00:04<00:00,  9.44it/s]     
Processing ASTN2--UGCG:  98%|█████████▊| 47/48 [00:04<00:00,  9.44it/s]
Processing ASTN2--RNU6-710P:  98%|█████████▊| 47/48 [00:04<00:00,  9.44it/s]
Processing ASTN2--RNU6-710P: 100%|██████████| 48/48 [00:05<00:00,  9.44it/s]
Processing ASTN2--RNU6-710P: 100%|██████████| 48/48 [00:05<00:00,  9.41it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory