File Info
- Filename
- aih-tih-sc-7fa0fb-R1_A23YTGFLT4_1.fusions.csv
- Full Path
- s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/59a0961e399550214f8a152fb8e555/aih-tih-sc-7fa0fb-R1_A23YTGFLT4_1.fusions.csv
- Size
- 11.6 KB
- Task
- NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-7fa0fb-R1_A23YTGFLT4_1)
- Attempt
Content
View in new tab| Fusion | Databases | Score | Explained score | arriba | starfusion |
| RPS11--UQCRFS1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr19:49498046#chr19:29208158,reading-frame: out-of-frame,type: inversion,split_reads1: 300,split_reads2: 300,discordant_mates: 1,coverage1: 12295,coverage2: 3003,confidence: high | position: chr19:49498046:+#chr19:29208158:-,junction_reads: 1190,spanning_reads: 1,ffmp: 6.3869 | |
| FBXL20--AC068413.1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr17:39343180#chr8:121043383,reading-frame: out-of-frame,type: translocation,split_reads1: 54,split_reads2: 2,discordant_mates: 0,coverage1: 6248,coverage2: 5,confidence: high | position: chr17:39343180:-#chr8:121043383:+,junction_reads: 185,spanning_reads: 0,ffmp: 0.9921 | |
| B4GALT1--BRINP1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr9:33166758#chr9:119313405,reading-frame: out-of-frame,type: duplication,split_reads1: 112,split_reads2: 30,discordant_mates: 0,coverage1: 4130,coverage2: 112,confidence: high | position: chr9:33166758:-#chr9:119313405:-,junction_reads: 150,spanning_reads: 0,ffmp: 0.8044 | |
| TRPS1--AC034268.2 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr8:115587001#chr17:53839992,reading-frame: out-of-frame,type: translocation,split_reads1: 62,split_reads2: 29,discordant_mates: 0,coverage1: 5154,coverage2: 42,confidence: high | position: chr8:115587001:-#chr17:53839992:-,junction_reads: 92,spanning_reads: 0,ffmp: 0.4934 | |
| CLINT1--TTC1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr5:157858930#chr5:160049514,reading-frame: out-of-frame,type: inversion,split_reads1: 19,split_reads2: 29,discordant_mates: 0,coverage1: 831,coverage2: 460,confidence: high | position: chr5:157858930:-#chr5:160049514:+,junction_reads: 49,spanning_reads: 0,ffmp: 0.2628 | |
| CLTC--ZFPM2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:59679519:+#chr8:105246293:+,junction_reads: 40,spanning_reads: 0,ffmp: 0.2145 | ||
| BCAS3--CA10 | Mitelman,FusionGDB2 | 0.375 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.000) | position: chr17:60709325#chr17:51931132,reading-frame: out-of-frame,type: inversion,split_reads1: 11,split_reads2: 14,discordant_mates: 0,coverage1: 1192,coverage2: 211,confidence: high | position: chr17:60709325:+#chr17:51931132:-,junction_reads: 31,spanning_reads: 0,ffmp: 0.1662 |
| SAMD12--CA10 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr8:118580715#chr17:52072393,reading-frame: out-of-frame,type: translocation,split_reads1: 10,split_reads2: 13,discordant_mates: 0,coverage1: 3656,coverage2: 70,confidence: high | position: chr8:118580715:-#chr17:52072393:-,junction_reads: 24,spanning_reads: 0,ffmp: 0.1287 | |
| SAMD12--AC034154.1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr8:118580715#chr4:97392728,reading-frame: out-of-frame,type: translocation,split_reads1: 16,split_reads2: 6,discordant_mates: 0,coverage1: 3656,coverage2: 23,confidence: high | position: chr8:118580715:-#chr4:97392728:-,junction_reads: 23,spanning_reads: 0,ffmp: 0.1233 | |
| PSMD11--RIMS2 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr17:32444614#chr8:103809280,reading-frame: out-of-frame,type: translocation,split_reads1: 2,split_reads2: 13,discordant_mates: 0,coverage1: 965,coverage2: 443,confidence: high | position: chr17:32444614:+#chr8:103809280:+,junction_reads: 18,spanning_reads: 0,ffmp: 0.0965 | |
| NFX1--GSN | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr9:33295427#chr9:121326512,reading-frame: out-of-frame,type: deletion,split_reads1: 14,split_reads2: 4,discordant_mates: 0,coverage1: 677,coverage2: 2520,confidence: high | position: chr9:33295427:+#chr9:121326512:+,junction_reads: 18,spanning_reads: 0,ffmp: 0.0965 | |
| SAMD12--STPG2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr8:118580715:-#chr4:97263581:-,junction_reads: 15,spanning_reads: 0,ffmp: 0.0804 | ||
| CEP43--ERBB4 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr6:167050315:+#chr2:211788159:-,junction_reads: 15,spanning_reads: 0,ffmp: 0.0402 | ||
| AC060809.1--ERBB4 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr15:81427545:+#chr2:211788159:-,junction_reads: 15,spanning_reads: 0,ffmp: 0.0402 | ||
| VPS13B--UBR5-AS1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr8:99835738:+#chr8:102244005:+,junction_reads: 13,spanning_reads: 0,ffmp: 0.0697 | ||
| TLK2P1--AC110079.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:34039043:-#chr4:118595912:+,junction_reads: 12,spanning_reads: 0,ffmp: 0.0585 | ||
| SAMD12--ZNF704 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr8:118379560:-#chr8:80643129:-,junction_reads: 11,spanning_reads: 0,ffmp: 0.059 | ||
| NSD3--ADAM9 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr8:38295796:-#chr8:39082641:+,junction_reads: 11,spanning_reads: 0,ffmp: 0.059 | ||
| LRP12--LINC01837 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr8:104495077:-#chr19:31910613:-,junction_reads: 9,spanning_reads: 0,ffmp: 0.0483 | ||
| LHX2--GGTA1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr9:124015525#chr9:121447597,reading-frame: out-of-frame,type: inversion,split_reads1: 6,split_reads2: 2,discordant_mates: 0,coverage1: 45,coverage2: 5,confidence: high | position: chr9:124015525:+#chr9:121447597:-,junction_reads: 8,spanning_reads: 0,ffmp: 0.0429 | |
| NPHP3--ACAD11 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr3:132681914#chr3:132644896,reading-frame: in-frame,type: deletion/read-through,split_reads1: 60,split_reads2: 14,discordant_mates: 0,coverage1: 547,coverage2: 656,confidence: high | ||
| USP32--MED30 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:60345481#chr8:117683689,reading-frame: out-of-frame,type: translocation,split_reads1: 43,split_reads2: 27,discordant_mates: 0,coverage1: 1469,coverage2: 39,confidence: high | ||
| USP32--EXT1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:60345481#chr8:117683689,reading-frame: out-of-frame,type: translocation,split_reads1: 43,split_reads2: 27,discordant_mates: 0,coverage1: 1469,coverage2: 39,confidence: high | ||
| CASC3--WIPF2 | Mitelman,FusionGDB2 | 0.312 | 0.5 * (0.125) + 0.5 * (0.500 + 0.000) | position: chr17:40141607#chr17:40256391,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 37,split_reads2: 26,discordant_mates: 0,coverage1: 7783,coverage2: 2857,confidence: high | |
| ZNF394--TAC1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr7:99498716#chr7:97831748,reading-frame: out-of-frame,type: deletion,split_reads1: 29,split_reads2: 4,discordant_mates: 0,coverage1: 924,coverage2: 13,confidence: high | ||
| ZNF394--ASNS | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr7:99498716#chr7:97831748,reading-frame: out-of-frame,type: deletion,split_reads1: 29,split_reads2: 4,discordant_mates: 0,coverage1: 924,coverage2: 13,confidence: high | ||
| CACNB1--TRPS1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:39191474#chr8:115892659,reading-frame: out-of-frame,type: translocation,split_reads1: 22,split_reads2: 2,discordant_mates: 0,coverage1: 295,coverage2: 3,confidence: high | ||
| CACNB1--LINC00536 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:39191474#chr8:115892659,reading-frame: out-of-frame,type: translocation,split_reads1: 22,split_reads2: 2,discordant_mates: 0,coverage1: 295,coverage2: 3,confidence: high | ||
| ST6GALNAC6--AL031073.2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr9:127894512#chrX:143010792,reading-frame: out-of-frame,type: translocation,split_reads1: 10,split_reads2: 12,discordant_mates: 0,coverage1: 1208,coverage2: 19,confidence: high | ||
| ST6GALNAC6--SPANXN4 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr9:127894512#chrX:143010792,reading-frame: out-of-frame,type: translocation,split_reads1: 10,split_reads2: 12,discordant_mates: 0,coverage1: 1208,coverage2: 19,confidence: high | ||
| TVP23C--CDRT4 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr17:15503098#chr17:15440285,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 12,split_reads2: 10,discordant_mates: 0,coverage1: 263,coverage2: 134,confidence: high | |
| FBXL20--LINC00536 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:39297127#chr8:116066996,reading-frame: out-of-frame,type: translocation/5'-5',split_reads1: 21,split_reads2: 1,discordant_mates: 0,coverage1: 3015,coverage2: 22,confidence: high | ||
| TAOK1--ABRA | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:29522519#chr8:106793379,reading-frame: out-of-frame,type: translocation,split_reads1: 18,split_reads2: 2,discordant_mates: 1,coverage1: 2097,coverage2: 9,confidence: high | ||
| TAOK1--AP003789.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:29522519#chr8:106793379,reading-frame: out-of-frame,type: translocation,split_reads1: 18,split_reads2: 2,discordant_mates: 1,coverage1: 2097,coverage2: 9,confidence: high | ||
| RRM2B--VPS13B | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr8:102238827#chr8:99801982,reading-frame: out-of-frame,type: deletion/5'-5',split_reads1: 12,split_reads2: 8,discordant_mates: 0,coverage1: 798,coverage2: 11,confidence: high | ||
| VMP1--SRCIN1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:59811786#chr17:38590654,reading-frame: out-of-frame,type: duplication/5'-5',split_reads1: 18,split_reads2: 2,discordant_mates: 0,coverage1: 1813,coverage2: 18,confidence: high | ||
| LRP12--AC106881.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr8:104588819#chr4:95624366,reading-frame: out-of-frame,type: translocation,split_reads1: 12,split_reads2: 7,discordant_mates: 0,coverage1: 1270,coverage2: 10,confidence: high | ||
| LRP12--RPL30P6 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr8:104588819#chr4:95624366,reading-frame: out-of-frame,type: translocation,split_reads1: 12,split_reads2: 7,discordant_mates: 0,coverage1: 1270,coverage2: 10,confidence: high | ||
| ST6GALNAC4--ST6GALNAC4 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr9:127913795#chr9:127912418,reading-frame: .,type: duplication,split_reads1: 9,split_reads2: 10,discordant_mates: 0,coverage1: 56,coverage2: 1116,confidence: high | ||
| DPYS--GRID2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr8:104428724#chr4:93395607,reading-frame: .,type: translocation/3'-3',split_reads1: 1,split_reads2: 13,discordant_mates: 0,coverage1: 2,coverage2: 98,confidence: high | ||
| IKZF3--TUBB4BP6 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:39777651#chr9:118852054,reading-frame: out-of-frame,type: translocation,split_reads1: 10,split_reads2: 2,discordant_mates: 0,coverage1: 303,coverage2: 2,confidence: high | ||
| IKZF3--BRINP1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:39777651#chr9:118852054,reading-frame: out-of-frame,type: translocation,split_reads1: 10,split_reads2: 2,discordant_mates: 0,coverage1: 303,coverage2: 2,confidence: high | ||
| BCAS3--RHBDF2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:60747279#chr17:76511420,reading-frame: out-of-frame,type: inversion,split_reads1: 8,split_reads2: 4,discordant_mates: 0,coverage1: 1088,coverage2: 9,confidence: high | ||
| BCAS3--CYGB | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:60747279#chr17:76511420,reading-frame: out-of-frame,type: inversion,split_reads1: 8,split_reads2: 4,discordant_mates: 0,coverage1: 1088,coverage2: 9,confidence: high | ||
| PPP4R1--RNU6-245P | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr18:9588089#chrX:68556645,reading-frame: out-of-frame,type: translocation,split_reads1: 10,split_reads2: 1,discordant_mates: 0,coverage1: 573,coverage2: 1,confidence: high | ||
| PPP4R1--RPL31P63 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr18:9588089#chrX:68556645,reading-frame: out-of-frame,type: translocation,split_reads1: 10,split_reads2: 1,discordant_mates: 0,coverage1: 573,coverage2: 1,confidence: high | ||
| ASTN2--UGCG | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr9:116820617#chr9:111957439,reading-frame: out-of-frame,type: inversion,split_reads1: 7,split_reads2: 3,discordant_mates: 0,coverage1: 421,coverage2: 4,confidence: high | ||
| ASTN2--RNU6-710P | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr9:116820617#chr9:111957439,reading-frame: out-of-frame,type: inversion,split_reads1: 7,split_reads2: 3,discordant_mates: 0,coverage1: 421,coverage2: 4,confidence: high |
49 rows