File Info

Filename
aih-tih-sc-9b89b4-R1_A23YTGFLT4_1.Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/7d219a263a9f0ab532c9f9ca4aa63b/aih-tih-sc-9b89b4-R1_A23YTGFLT4_1.Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 07:41:27
                             Started mapping on |	Jun 08 07:43:31
                                    Finished on |	Jun 08 08:41:04
       Mapping speed, Million of reads per hour |	309.20

                          Number of input reads |	296573757
                      Average input read length |	244
                                    UNIQUE READS:
                   Uniquely mapped reads number |	285553669
                        Uniquely mapped reads % |	96.28%
                          Average mapped length |	244.11
                       Number of splices: Total |	323794267
            Number of splices: Annotated (sjdb) |	320231021
                       Number of splices: GT/AG |	320937485
                       Number of splices: GC/AG |	1967110
                       Number of splices: AT/AC |	236681
               Number of splices: Non-canonical |	652991
                      Mismatch rate per base, % |	0.29%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.04
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.60
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	6424098
             % of reads mapped to multiple loci |	2.17%
        Number of reads mapped to too many loci |	175038
             % of reads mapped to too many loci |	0.06%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	512681
       % of reads unmapped: too many mismatches |	0.17%
            Number of reads unmapped: too short |	1945594
                 % of reads unmapped: too short |	0.66%
                Number of reads unmapped: other |	166659
                     % of reads unmapped: other |	0.06%
                                  CHIMERIC READS:
                       Number of chimeric reads |	3200161
                            % of chimeric reads |	1.08%