File Info

Filename
output/Logs/Info.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/363384bcc9e7b276127105238c29e3/output/Logs/Info.log
Size
4.2 KB
Attempt
2026-06-08T06:20:03Z thread 416 Sample sheet being processed by common lib? Yes
2026-06-08T06:20:03Z thread 416 SampleSheet Settings: 
2026-06-08T06:20:03Z thread 416   FastqCompressionFormat = gzip
2026-06-08T06:20:03Z thread 416   NoLaneSplitting = FALSE
2026-06-08T06:20:03Z thread 416   OverrideCycles = Y151;I10;I10;Y151
2026-06-08T06:20:03Z thread 416   SoftwareVersion = 4.3.6
2026-06-08T06:20:03Z thread 416 
2026-06-08T06:20:03Z thread 416 Index Read 2 (i5): The barcode and UMI outputs will be processed and output in Reverse Complement of Sample Sheet inputs. OverrideCycles bases for this read will be interpreted in reverse.
2026-06-08T06:20:03Z thread 416 shared-thread-linux-native-asio output is disabled
2026-06-08T06:20:03Z thread 416 bcl-convert Version 4.4.6
2026-06-08T06:20:03Z thread 416 Copyright (c) 2014-2025 Illumina, Inc.
2026-06-08T06:20:03Z thread 416 Command Line: --tiles s_1 --output-directory output --bcl-input-directory rundir --sample-sheet rundir/SampleSheet.csv 
2026-06-08T06:20:03Z thread 416 Conversion Begins.
2026-06-08T06:20:03Z thread 416 Input BCL Information:
2026-06-08T06:20:03Z thread 416     Read Structure: 2026-06-08T06:20:03Z thread 416 Y1512026-06-08T06:20:03Z thread 416 ;2026-06-08T06:20:03Z thread 416 I102026-06-08T06:20:03Z thread 416 ;2026-06-08T06:20:03Z thread 416 I102026-06-08T06:20:03Z thread 416 ;2026-06-08T06:20:03Z thread 416 Y1512026-06-08T06:20:03Z thread 416 
2026-06-08T06:20:03Z thread 416     RunInfo.xml file lists: 8 lanes, 6272 tiles
2026-06-08T06:20:03Z thread 416     BCL file format: cbcl
2026-06-08T06:20:03Z thread 416     Positions file format: slocs
2026-06-08T06:20:03Z thread 416     Filter file format: filter
2026-06-08T06:20:03Z thread 416 Conversion Information:
2026-06-08T06:20:03Z thread 416     Tile filtering: converting 784/6272 tiles
2026-06-08T06:20:03Z thread 416     Sample Count for Lane 1: 96
2026-06-08T06:20:03Z thread 416     Sample Count for Lane 2: 96
2026-06-08T06:20:03Z thread 416     Lane 2 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:20:03Z thread 416     Sample Count for Lane 3: 96
2026-06-08T06:20:03Z thread 416     Lane 3 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:20:03Z thread 416     Sample Count for Lane 4: 96
2026-06-08T06:20:03Z thread 416     Lane 4 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:20:03Z thread 416     Sample Count for Lane 5: 96
2026-06-08T06:20:03Z thread 416     Lane 5 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:20:03Z thread 416     Sample Count for Lane 6: 96
2026-06-08T06:20:03Z thread 416     Lane 6 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:20:03Z thread 416     Sample Count for Lane 7: 96
2026-06-08T06:20:03Z thread 416     Lane 7 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:20:03Z thread 416     Sample Count for Lane 8: 96
2026-06-08T06:20:03Z thread 416     Lane 8 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:20:03Z thread 416     Expected number of sample FASTQ files to be created: 192
2026-06-08T06:20:03Z thread 416 # CPU hw threads available: 64
2026-06-08T06:20:04Z thread 416 Parallel Tiles: 4. Threads Per Tile: 16
2026-06-08T06:20:04Z thread 416 SW compressors: 64
2026-06-08T06:20:04Z thread 416 SW decompressors: 32
2026-06-08T06:20:04Z thread 416 SW FASTQ compression level: 1
2026-06-08T07:03:28Z thread 416 Lane 1 Post-run Information:
2026-06-08T07:03:28Z thread 416     Total clusters: 3949083474
2026-06-08T07:03:28Z thread 416     Total Genomic Reads: 7898166948
2026-06-08T07:03:28Z thread 416     Total Genomic Input Gigabases 1192.62
2026-06-08T07:03:28Z thread 416     Minimum reads for a sample: 22716
2026-06-08T07:03:28Z thread 416     Maximum reads for a sample: 144040254
2026-06-08T07:03:28Z thread 416     Average reads per sample: 76165353.29
2026-06-08T07:03:28Z thread 416     Undetermined reads: 586293032
2026-06-08T07:03:29Z thread 416 Conversion Complete.