Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/a0688930551e426909ca1d9d6d7364/aih-tih-sc-01c779-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/6c19befcf70d89acc2df9be6a0ba77/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/6c19befcf70d89acc2df9be6a0ba77/.command.run ==> STAGING COMPLETE (3 inputs) PAIRED_END_BAM_INPUT Processed 1000000 records Processed 2000000 records Processed 3000000 records Processed 4000000 records Processed 5000000 records Processed 6000000 records Processed 7000000 records Processed 8000000 records Processed 9000000 records Processed 10000000 records Processed 11000000 records Processed 12000000 records Processed 13000000 records Processed 14000000 records Processed 15000000 records Processed 16000000 records Processed 17000000 records Processed 18000000 records Processed 19000000 records Processed 20000000 records Processed 21000000 records Processed 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Processed 132000000 records Processed 133000000 records Processed 134000000 records Processed 135000000 records Processed 136000000 records Processed 137000000 records Processed 138000000 records Processed 139000000 records Processed 140000000 records Processed 141000000 records Processed 142000000 records Processed 143000000 records Processed 144000000 records Processed 145000000 records Processed 146000000 records Processed 147000000 records Processed 148000000 records Processed 149000000 records Processed 150000000 records Processed 151000000 records Processed 152000000 records Processed 153000000 records Processed 154000000 records Processed 155000000 records Processed 156000000 records Processed 157000000 records Processed 158000000 records Processed 159000000 records Processed 160000000 records Processed 161000000 records Processed 162000000 records Processed 163000000 records Processed 164000000 records Processed 165000000 records Processed 166000000 records Processed 167000000 records Processed 168000000 records Processed 169000000 records Processed 170000000 records Processed 171000000 records Processed 172000000 records Processed 173000000 records Processed 174000000 records Processed 175000000 records Processed 176000000 records Processed 177000000 records Processed 178000000 records Processed 179000000 records Processed 180000000 records Processed 181000000 records Processed 182000000 records Processed 183000000 records Processed 184000000 records Processed 185000000 records Processed 186000000 records Processed 187000000 records Processed 188000000 records Processed 189000000 records Processed 190000000 records Processed 191000000 records Processed 192000000 records Processed 193000000 records Processed 194000000 records Processed 195000000 records Processed 196000000 records Processed 197000000 records Processed 198000000 records Processed 199000000 records Processed 200000000 records Processed 201000000 records Processed 202000000 records Processed 203000000 records Processed 204000000 records Processed 205000000 records Processed 206000000 records Processed 207000000 records Processed 208000000 records Processed 209000000 records Processed 210000000 records Processed 211000000 records Processed 212000000 records Processed 213000000 records Processed 214000000 records Processed 215000000 records Processed 216000000 records Processed 217000000 records Processed 218000000 records Processed 219000000 records Processed 220000000 records Processed 221000000 records Processed 222000000 records Processed 223000000 records Processed 224000000 records Processed 225000000 records Processed 226000000 records Processed 227000000 records Processed 228000000 records Processed 229000000 records Processed 230000000 records Processed 231000000 records Processed 232000000 records Processed 233000000 records Processed 234000000 records Processed 235000000 records Processed 236000000 records Processed 237000000 records Processed 238000000 records Processed 239000000 records Processed 240000000 records Processed 241000000 records Processed 242000000 records Processed 243000000 records Processed 244000000 records Processed 245000000 records Processed 246000000 records Processed 247000000 records Processed 248000000 records Processed 249000000 records Processed 250000000 records Processed 251000000 records Processed 252000000 records Processed 253000000 records Processed 254000000 records Processed 255000000 records Processed 256000000 records Processed 257000000 records Processed 258000000 records Processed 259000000 records Processed 260000000 records Processed 261000000 records Processed 262000000 records Processed 263000000 records Processed 264000000 records Processed 265000000 records Processed 266000000 records Processed 267000000 records Processed 268000000 records Processed 269000000 records Processed 270000000 records Processed 271000000 records Processed 272000000 records Processed 273000000 records Processed 274000000 records Processed 275000000 records Processed 276000000 records Processed 277000000 records Processed 278000000 records Processed 279000000 records Processed 280000000 records Processed 281000000 records Processed 282000000 records Processed 283000000 records Processed 284000000 records Processed 285000000 records Processed 286000000 records Processed 287000000 records Processed 288000000 records Processed 289000000 records Processed 290000000 records Processed 291000000 records Processed 292000000 records Processed 293000000 records Processed 294000000 records Processed 295000000 records Processed 296000000 records Processed 297000000 records Processed 298000000 records Processed 299000000 records Processed 300000000 records Processed 301000000 records Processed 302000000 records Processed 303000000 records Processed 304000000 records Processed 305000000 records Processed 306000000 records Processed 307000000 records Processed 308000000 records Processed 309000000 records Processed 310000000 records Processed 311000000 records Processed 312000000 records Processed 313000000 records Processed 314000000 records Processed 315000000 records Processed 316000000 records Processed 317000000 records Processed 318000000 records Processed 319000000 records Processed 320000000 records Processed 321000000 records Processed 322000000 records Processed 323000000 records Processed 324000000 records Processed 325000000 records Processed 326000000 records Processed 327000000 records Processed 328000000 records Processed 329000000 records Processed 330000000 records Processed 331000000 records Processed 332000000 records Processed 333000000 records Processed 334000000 records Processed 335000000 records Processed 336000000 records Processed 337000000 records Processed 338000000 records Processed 339000000 records Processed 340000000 records Processed 341000000 records Processed 342000000 records Processed 343000000 records Processed 344000000 records Processed 345000000 records Processed 346000000 records Processed 347000000 records Processed 348000000 records Processed 349000000 records Processed 350000000 records Processed 351000000 records Processed 352000000 records Processed 353000000 records Processed 354000000 records Processed 355000000 records Processed 356000000 records Processed 357000000 records Processed 358000000 records Processed 359000000 records Processed 360000000 records Processed 361000000 records Processed 362000000 records Processed 363000000 records Processed 364000000 records Processed 365000000 records Processed 366000000 records Processed 367000000 records Processed 368000000 records Processed 369000000 records Processed 370000000 records Processed 371000000 records Processed 372000000 records Processed 373000000 records Processed 374000000 records Processed 375000000 records Processed 376000000 records Processed 377000000 records Processed 378000000 records Processed 379000000 records Processed 380000000 records Processed 381000000 records Processed 382000000 records Processed 383000000 records Processed 384000000 records Processed 385000000 records Processed 386000000 records Processed 387000000 records Processed 388000000 records Processed 389000000 records Processed 390000000 records Processed 391000000 records Processed 392000000 records Processed 393000000 records Processed 394000000 records Processed 395000000 records Processed 396000000 records Processed 397000000 records Processed 398000000 records Processed 399000000 records Processed 400000000 records Processed 401000000 records Processed 402000000 records Processed 403000000 records Processed 404000000 records Processed 405000000 records Processed 406000000 records Processed 407000000 records Processed 408000000 records Processed 409000000 records Processed 410000000 records Processed 411000000 records Processed 412000000 records Processed 413000000 records Processed 414000000 records Processed 415000000 records Processed 416000000 records Processed 417000000 records Processed 418000000 records Processed 419000000 records Processed 420000000 records Processed 421000000 records Processed 422000000 records Processed 423000000 records Processed 424000000 records Processed 425000000 records Processed 426000000 records Processed 427000000 records Processed 428000000 records Processed 429000000 records Processed 430000000 records Processed 431000000 records Processed 432000000 records Processed 433000000 records Processed 434000000 records Processed 435000000 records Processed 436000000 records Processed 437000000 records Processed 438000000 records Processed 439000000 records Processed 440000000 records Processed 441000000 records Processed 442000000 records Processed 443000000 records Processed 444000000 records Processed 445000000 records Processed 446000000 records Processed 447000000 records Processed 448000000 records Processed 449000000 records Processed 450000000 records Processed 451000000 records Processed 452000000 records Processed 453000000 records Processed 454000000 records Processed 455000000 records Processed 456000000 records Processed 457000000 records Processed 458000000 records Processed 459000000 records Processed 460000000 records Processed 461000000 records Processed 462000000 records Processed 463000000 records Processed 464000000 records Processed 465000000 records Processed 466000000 records Processed 467000000 records Processed 468000000 records Processed 469000000 records Processed 470000000 records Processed 471000000 records Processed 472000000 records Processed 473000000 records Processed 474000000 records Processed 475000000 records Processed 476000000 records Processed 477000000 records Processed 478000000 records Processed 479000000 records Processed 480000000 records Processed 481000000 records Processed 482000000 records Processed 483000000 records Processed 484000000 records Processed 485000000 records Processed 486000000 records Processed 487000000 records Processed 488000000 records Processed 489000000 records Processed 490000000 records Processed 491000000 records Processed 492000000 records Processed 493000000 records Processed 494000000 records Processed 495000000 records Processed 496000000 records Processed 497000000 records Processed 498000000 records Processed 499000000 records Processed 500000000 records Processed 501000000 records Processed 502000000 records Processed 503000000 records Processed 504000000 records Processed 505000000 records Processed 506000000 records Processed 507000000 records Processed 508000000 records Processed 509000000 records Processed 510000000 records Processed 511000000 records Processed 512000000 records Processed 513000000 records Processed 514000000 records Processed 515000000 records Processed 516000000 records Processed 517000000 records Processed 518000000 records Processed 519000000 records Processed 520000000 records Processed 521000000 records Processed 522000000 records Processed 523000000 records Processed 524000000 records Processed 525000000 records Processed 526000000 records Processed 527000000 records Processed 528000000 records Processed 529000000 records Processed 530000000 records Processed 531000000 records Processed 532000000 records Processed 533000000 records Processed 534000000 records Processed 535000000 records Processed 536000000 records Processed 537000000 records Processed 538000000 records Processed 539000000 records Processed 540000000 records Processed 541000000 records paired = 268646947 unpaired = 4014633 MERGED PAIRED END READS = 268646947 MATES PROCESSED = 541308527 TOTAL READS = 272661580 DISTINCT READS = 1.23047e+08 DISTINCT COUNTS = 736 MAX COUNT = 623740 COUNTS OF 1 = 6.39453e+07 MAX TERMS = 100 OBSERVED COUNTS (623741) 1 63945335 2 28613556 3 13739531 4 6846110 5 3594820 6 2012436 7 1200640 8 762004 9 510750 10 357364 11 259147 12 195902 13 151302 14 119457 15 95549 16 77768 17 64632 18 53931 19 45803 20 38792 21 33344 22 29287 23 25303 24 22164 25 19534 26 17569 27 15513 28 13992 29 12636 30 11520 31 10171 32 9276 33 8255 34 7761 35 7006 36 6510 37 5904 38 5579 39 5258 40 4720 41 4348 42 4018 43 3888 44 3606 45 3381 46 3125 47 2904 48 2730 49 2585 50 2507 51 2319 52 2148 53 2015 54 1994 55 1774 56 1681 57 1614 58 1579 59 1491 60 1406 61 1290 62 1252 63 1213 64 1155 65 1155 66 1063 67 1054 68 973 69 888 70 891 71 831 72 804 73 770 74 757 75 719 76 668 77 588 78 643 79 629 80 526 81 557 82 522 83 498 84 481 85 465 86 437 87 453 88 477 89 434 90 390 91 405 92 353 93 367 94 353 95 328 96 341 97 304 98 348 99 282 100 317 101 265 102 305 103 269 104 269 105 286 106 285 107 235 108 199 109 220 110 201 111 224 112 205 113 183 114 180 115 207 116 200 117 159 118 177 119 167 120 149 121 168 122 185 123 149 124 157 125 142 126 147 127 142 128 130 129 134 130 140 131 129 132 131 133 109 134 117 135 111 136 127 137 113 138 112 139 107 140 108 141 87 142 92 143 107 144 107 145 89 146 92 147 88 148 96 149 89 150 82 151 76 152 67 153 92 154 60 155 68 156 69 157 56 158 69 159 74 160 62 161 60 162 65 163 83 164 64 165 70 166 53 167 65 168 66 169 57 170 61 171 42 172 64 173 53 174 57 175 54 176 53 177 39 178 61 179 44 180 50 181 61 182 36 183 46 184 33 185 49 186 49 187 43 188 35 189 50 190 31 191 38 192 21 193 53 194 32 195 42 196 29 197 40 198 45 199 37 200 34 201 28 202 25 203 33 204 35 205 24 206 27 207 31 208 32 209 29 210 23 211 27 212 21 213 17 214 30 215 16 216 23 217 33 218 22 219 24 220 22 221 17 222 21 223 25 224 32 225 27 226 26 227 22 228 22 229 29 230 16 231 17 232 18 233 19 234 18 235 19 236 19 237 19 238 18 239 24 240 15 241 18 242 10 243 19 244 18 245 23 246 16 247 20 248 22 249 12 250 14 251 14 252 20 253 12 254 14 255 13 256 13 257 14 258 14 259 20 260 11 261 17 262 19 263 15 264 15 265 13 266 18 267 17 268 12 269 13 270 17 271 14 272 14 273 16 274 12 275 11 276 20 277 8 278 11 279 12 280 9 281 9 282 9 283 8 284 14 285 11 286 8 287 11 288 10 289 11 290 9 291 16 292 13 293 6 294 8 295 12 296 7 297 11 298 6 299 12 300 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2 477 3 479 5 482 2 483 1 484 1 485 4 486 2 487 3 488 1 489 6 490 1 491 3 493 2 494 1 495 2 496 1 497 1 499 1 500 1 502 2 503 1 504 3 506 1 507 4 509 1 510 1 511 1 513 1 515 3 517 1 518 2 519 2 520 2 521 1 523 1 524 2 525 1 526 2 527 1 528 3 530 1 532 2 533 1 534 1 535 1 536 5 537 4 538 1 541 2 542 2 543 2 544 1 545 1 546 3 547 2 548 3 549 4 550 1 552 1 553 2 554 1 555 1 556 2 558 3 559 2 560 3 561 3 562 1 566 2 567 3 570 2 571 1 572 1 573 3 574 1 577 2 580 1 581 1 583 1 585 1 590 2 591 1 592 1 594 1 595 1 596 1 597 1 600 1 601 1 602 1 603 2 604 2 605 1 606 1 607 2 608 1 609 3 612 1 614 1 615 1 616 1 617 2 618 1 620 4 621 2 622 2 623 3 625 1 626 1 627 1 629 2 634 2 635 2 637 1 638 1 644 1 645 1 648 2 649 2 651 1 652 1 654 1 656 1 657 1 658 2 660 3 663 2 664 1 665 1 666 1 667 2 669 3 673 1 674 1 675 1 677 1 680 2 682 2 683 2 684 2 685 2 686 2 693 1 694 3 695 2 697 1 700 1 705 1 718 1 725 1 729 1 730 4 732 2 733 1 734 1 741 2 748 1 750 1 755 1 758 2 759 3 763 1 764 2 765 4 766 1 771 1 774 1 776 1 777 1 779 1 780 1 782 2 788 1 793 1 799 3 800 1 801 2 809 1 830 1 834 1 835 1 842 1 847 1 851 1 855 2 863 1 864 1 865 1 870 2 871 1 873 1 877 1 887 2 889 1 895 1 912 1 918 1 923 1 924 1 937 1 938 1 944 1 949 1 959 1 971 1 976 1 986 1 998 1 1006 1 1009 1 1014 1 1018 1 1021 1 1030 1 1031 1 1040 1 1044 1 1045 1 1046 1 1047 1 1054 1 1059 1 1064 1 1065 2 1080 1 1093 1 1094 1 1135 1 1142 1 1144 2 1145 1 1149 1 1189 1 1191 1 1225 1 1238 1 1245 1 1296 1 1300 1 1303 2 1321 1 1349 1 1409 1 1425 1 1445 1 1477 1 1480 1 1499 1 1534 1 1563 1 1577 1 1591 2 1605 1 1663 1 1824 1 1935 1 1960 1 2013 1 2053 1 2179 1 2264 1 2273 1 2483 1 2638 1 2744 1 3127 1 3224 1 8979 1 12852 1 43207 1 623740 1 [ESTIMATING YIELD CURVE] [BOOTSTRAPPING HISTOGRAM] ........_................._.............._._.._....._................... .._........._........._.._......._._.... [COMPUTING CONFIDENCE INTERVALS] [WRITING OUTPUT]