Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/22/303a32e9487114565771f1a0a6ad8a/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/22/303a32e9487114565771f1a0a6ad8a/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/4e7e21271351cd402ce957db9f9825/aih-tih-sc-a9fe91-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/e9c99e82bb6fdf07a447eeafcd44e3/aih-tih-sc-a9fe91-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)
[32mRunning application...[0m
AL049629.2--EHF
starfusion
TLK2--AC240565.1
starfusion
TLK2P1--AC110079.1
starfusion
STX16--NPEPL1
starfusion
arriba
PMS2P6--CCDC146
starfusion
PCDHA4--PCDHAC2
arriba
PCDHA4--PCDHA13
arriba
PCDHA4--PCDHAC1
arriba
TVP23C--CDRT4
arriba
YTHDC1--GABRA4
arriba
PCDHA5--PCDHAC1
arriba
PCDHA5--PCDHAC2
arriba
PCDHA5--PCDHA13
arriba
AC015911.9--SLFN12L
arriba
CRYZL2P--SEC16B
arriba
TLK2--FAM157A
arriba
0%| | 0/16 [00:00<?, ?it/s]
Processing AL049629.2--EHF: 0%| | 0/16 [00:00<?, ?it/s]
Processing AL049629.2--EHF: 6%|▋ | 1/16 [00:00<00:01, 9.24it/s]
Processing TLK2--AC240565.1: 6%|▋ | 1/16 [00:00<00:01, 9.24it/s]
Processing TLK2--AC240565.1: 12%|█▎ | 2/16 [00:00<00:01, 9.48it/s]
Processing TLK2P1--AC110079.1: 12%|█▎ | 2/16 [00:00<00:01, 9.48it/s]
Processing TLK2P1--AC110079.1: 19%|█▉ | 3/16 [00:00<00:01, 9.56it/s]
Processing STX16--NPEPL1: 19%|█▉ | 3/16 [00:00<00:01, 9.56it/s]
Processing STX16--NPEPL1: 25%|██▌ | 4/16 [00:00<00:01, 9.59it/s]
Processing PMS2P6--CCDC146: 25%|██▌ | 4/16 [00:00<00:01, 9.59it/s]
Processing PMS2P6--CCDC146: 31%|███▏ | 5/16 [00:00<00:01, 9.62it/s]
Processing PCDHA4--PCDHAC2: 31%|███▏ | 5/16 [00:00<00:01, 9.62it/s]
Processing PCDHA4--PCDHAC2: 38%|███▊ | 6/16 [00:00<00:01, 9.63it/s]
Processing PCDHA4--PCDHA13: 38%|███▊ | 6/16 [00:00<00:01, 9.63it/s]
Processing PCDHA4--PCDHA13: 44%|████▍ | 7/16 [00:00<00:00, 9.64it/s]
Processing PCDHA4--PCDHAC1: 44%|████▍ | 7/16 [00:00<00:00, 9.64it/s]
Processing PCDHA4--PCDHAC1: 50%|█████ | 8/16 [00:00<00:00, 9.64it/s]
Processing TVP23C--CDRT4: 50%|█████ | 8/16 [00:00<00:00, 9.64it/s]
Processing TVP23C--CDRT4: 56%|█████▋ | 9/16 [00:00<00:00, 9.65it/s]
Processing YTHDC1--GABRA4: 56%|█████▋ | 9/16 [00:00<00:00, 9.65it/s]
Processing YTHDC1--GABRA4: 62%|██████▎ | 10/16 [00:01<00:00, 9.65it/s]
Processing PCDHA5--PCDHAC1: 62%|██████▎ | 10/16 [00:01<00:00, 9.65it/s]
Processing PCDHA5--PCDHAC1: 69%|██████▉ | 11/16 [00:01<00:00, 9.65it/s]
Processing PCDHA5--PCDHAC2: 69%|██████▉ | 11/16 [00:01<00:00, 9.65it/s]
Processing PCDHA5--PCDHAC2: 75%|███████▌ | 12/16 [00:01<00:00, 9.65it/s]
Processing PCDHA5--PCDHA13: 75%|███████▌ | 12/16 [00:01<00:00, 9.65it/s]
Processing PCDHA5--PCDHA13: 81%|████████▏ | 13/16 [00:01<00:00, 9.64it/s]
Processing AC015911.9--SLFN12L: 81%|████████▏ | 13/16 [00:01<00:00, 9.64it/s]
Processing AC015911.9--SLFN12L: 88%|████████▊ | 14/16 [00:01<00:00, 9.63it/s]
Processing CRYZL2P--SEC16B: 88%|████████▊ | 14/16 [00:01<00:00, 9.63it/s]
Processing CRYZL2P--SEC16B: 94%|█████████▍| 15/16 [00:01<00:00, 9.63it/s]
Processing TLK2--FAM157A: 94%|█████████▍| 15/16 [00:01<00:00, 9.63it/s]
Processing TLK2--FAM157A: 100%|██████████| 16/16 [00:01<00:00, 9.62it/s]
Processing TLK2--FAM157A: 100%|██████████| 16/16 [00:01<00:00, 9.62it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory