Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT aih-tih-sc-3282fd-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-3282fd-R1_A23YTGFLT4_1.md.bam --METRICS_FILE aih-tih-sc-3282fd-R1_A23YTGFLT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:20:19.262 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:20:19 GMT 2026] MarkDuplicates --INPUT aih-tih-sc-3282fd-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-3282fd-R1_A23YTGFLT4_1.md.bam --METRICS_FILE aih-tih-sc-3282fd-R1_A23YTGFLT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:20:19 GMT 2026] Executing as ?@nf-c3b679291e1173a9fa8c96c045dfcb12-ea981-bjv2b on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:20:19 MarkDuplicates Start of doWork freeMemory: 105829296; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:20:19 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:20:19 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:20:22 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,387,368
INFO 2026-06-08 08:20:22 MarkDuplicates Tracking 1555 as yet unmatched pairs. 186 records in RAM.
INFO 2026-06-08 08:20:24 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:03s. Time for last 1,000,000: 1s. Last read position: chr1:2,588,339
INFO 2026-06-08 08:20:24 MarkDuplicates Tracking 2922 as yet unmatched pairs. 16 records in RAM.
INFO 2026-06-08 08:20:26 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 1s. Last read position: chr1:8,863,902
INFO 2026-06-08 08:20:26 MarkDuplicates Tracking 4560 as yet unmatched pairs. 301 records in RAM.
INFO 2026-06-08 08:20:28 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 2s. Last read position: chr1:11,790,840
INFO 2026-06-08 08:20:28 MarkDuplicates Tracking 5705 as yet unmatched pairs. 47 records in RAM.
INFO 2026-06-08 08:20:30 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 1s. Last read position: chr1:15,660,453
INFO 2026-06-08 08:20:30 MarkDuplicates Tracking 7083 as yet unmatched pairs. 44 records in RAM.
INFO 2026-06-08 08:20:31 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 1s. Last read position: chr1:17,004,994
INFO 2026-06-08 08:20:31 MarkDuplicates Tracking 8280 as yet unmatched pairs. 57 records in RAM.
INFO 2026-06-08 08:20:34 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 2s. Last read position: chr1:19,739,816
INFO 2026-06-08 08:20:34 MarkDuplicates Tracking 9611 as yet unmatched pairs. 37 records in RAM.
INFO 2026-06-08 08:20:35 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 1s. Last read position: chr1:21,875,895
INFO 2026-06-08 08:20:35 MarkDuplicates Tracking 10989 as yet unmatched pairs. 187 records in RAM.
INFO 2026-06-08 08:20:37 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 1s. Last read position: chr1:23,311,306
INFO 2026-06-08 08:20:37 MarkDuplicates Tracking 12620 as yet unmatched pairs. 413 records in RAM.
INFO 2026-06-08 08:20:39 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 1s. Last read position: chr1:25,901,578
INFO 2026-06-08 08:20:39 MarkDuplicates Tracking 13590 as yet unmatched pairs. 128 records in RAM.
INFO 2026-06-08 08:20:41 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 2s. Last read position: chr1:27,409,987
INFO 2026-06-08 08:20:41 MarkDuplicates Tracking 14978 as yet unmatched pairs. 218 records in RAM.
INFO 2026-06-08 08:20:43 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 1s. Last read position: chr1:30,964,789
INFO 2026-06-08 08:20:43 MarkDuplicates Tracking 16237 as yet unmatched pairs. 155 records in RAM.
INFO 2026-06-08 08:20:45 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 1s. Last read position: chr1:32,280,114
INFO 2026-06-08 08:20:45 MarkDuplicates Tracking 17501 as yet unmatched pairs. 50 records in RAM.
INFO 2026-06-08 08:20:46 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 1s. Last read position: chr1:35,192,597
INFO 2026-06-08 08:20:46 MarkDuplicates Tracking 19181 as yet unmatched pairs. 467 records in RAM.
INFO 2026-06-08 08:20:48 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 1s. Last read position: chr1:37,569,101
INFO 2026-06-08 08:20:48 MarkDuplicates Tracking 19943 as yet unmatched pairs. 24 records in RAM.
INFO 2026-06-08 08:20:49 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 1s. Last read position: chr1:39,965,916
INFO 2026-06-08 08:20:49 MarkDuplicates Tracking 21254 as yet unmatched pairs. 50 records in RAM.
INFO 2026-06-08 08:20:52 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 2s. Last read position: chr1:43,415,979
INFO 2026-06-08 08:20:52 MarkDuplicates Tracking 22540 as yet unmatched pairs. 28 records in RAM.
INFO 2026-06-08 08:20:54 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 1s. Last read position: chr1:45,604,947
INFO 2026-06-08 08:20:54 MarkDuplicates Tracking 23956 as yet unmatched pairs. 100 records in RAM.
INFO 2026-06-08 08:20:55 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 1s. Last read position: chr1:51,806,727
INFO 2026-06-08 08:20:55 MarkDuplicates Tracking 25243 as yet unmatched pairs. 92 records in RAM.
INFO 2026-06-08 08:20:57 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 1s. Last read position: chr1:58,576,672
INFO 2026-06-08 08:20:57 MarkDuplicates Tracking 26976 as yet unmatched pairs. 507 records in RAM.
INFO 2026-06-08 08:20:59 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 2s. Last read position: chr1:70,232,348
INFO 2026-06-08 08:20:59 MarkDuplicates Tracking 27802 as yet unmatched pairs. 176 records in RAM.
INFO 2026-06-08 08:21:00 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 1s. Last read position: chr1:88,983,627
INFO 2026-06-08 08:21:00 MarkDuplicates Tracking 28909 as yet unmatched pairs. 98 records in RAM.
INFO 2026-06-08 08:21:02 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 1s. Last read position: chr1:94,487,961
INFO 2026-06-08 08:21:02 MarkDuplicates Tracking 30073 as yet unmatched pairs. 47 records in RAM.
INFO 2026-06-08 08:21:03 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 1s. Last read position: chr1:109,269,975
INFO 2026-06-08 08:21:03 MarkDuplicates Tracking 31155 as yet unmatched pairs. 22 records in RAM.
INFO 2026-06-08 08:21:05 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 1s. Last read position: chr1:112,667,091
INFO 2026-06-08 08:21:05 MarkDuplicates Tracking 32638 as yet unmatched pairs. 262 records in RAM.
INFO 2026-06-08 08:21:06 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 1s. Last read position: chr1:116,395,275
INFO 2026-06-08 08:21:06 MarkDuplicates Tracking 33888 as yet unmatched pairs. 161 records in RAM.
INFO 2026-06-08 08:21:09 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 2s. Last read position: chr1:119,948,422
INFO 2026-06-08 08:21:09 MarkDuplicates Tracking 35581 as yet unmatched pairs. 731 records in RAM.
INFO 2026-06-08 08:21:11 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 1s. Last read position: chr1:144,063,177
INFO 2026-06-08 08:21:11 MarkDuplicates Tracking 35652 as yet unmatched pairs. 15 records in RAM.
INFO 2026-06-08 08:21:12 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 1s. Last read position: chr1:146,156,167
INFO 2026-06-08 08:21:12 MarkDuplicates Tracking 36669 as yet unmatched pairs. 374 records in RAM.
INFO 2026-06-08 08:21:13 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 1s. Last read position: chr1:148,589,295
INFO 2026-06-08 08:21:13 MarkDuplicates Tracking 36899 as yet unmatched pairs. 51 records in RAM.
INFO 2026-06-08 08:21:14 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 1s. Last read position: chr1:149,852,977
INFO 2026-06-08 08:21:14 MarkDuplicates Tracking 37442 as yet unmatched pairs. 12 records in RAM.
INFO 2026-06-08 08:21:16 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr1:150,750,025
INFO 2026-06-08 08:21:16 MarkDuplicates Tracking 38946 as yet unmatched pairs. 241 records in RAM.
INFO 2026-06-08 08:21:17 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:151,775,837
INFO 2026-06-08 08:21:17 MarkDuplicates Tracking 39926 as yet unmatched pairs. 23 records in RAM.
INFO 2026-06-08 08:21:19 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 1s. Last read position: chr1:154,157,588
INFO 2026-06-08 08:21:19 MarkDuplicates Tracking 42453 as yet unmatched pairs. 1453 records in RAM.
INFO 2026-06-08 08:21:20 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:154,602,048
INFO 2026-06-08 08:21:20 MarkDuplicates Tracking 42252 as yet unmatched pairs. 110 records in RAM.
INFO 2026-06-08 08:21:22 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 1s. Last read position: chr1:155,237,357
INFO 2026-06-08 08:21:22 MarkDuplicates Tracking 43366 as yet unmatched pairs. 69 records in RAM.
INFO 2026-06-08 08:21:23 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:156,061,368
INFO 2026-06-08 08:21:23 MarkDuplicates Tracking 44645 as yet unmatched pairs. 226 records in RAM.
INFO 2026-06-08 08:21:25 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 2s. Last read position: chr1:156,816,079
INFO 2026-06-08 08:21:25 MarkDuplicates Tracking 45856 as yet unmatched pairs. 14 records in RAM.
INFO 2026-06-08 08:21:27 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 2s. Last read position: chr1:160,354,208
INFO 2026-06-08 08:21:27 MarkDuplicates Tracking 47344 as yet unmatched pairs. 256 records in RAM.
INFO 2026-06-08 08:21:30 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 2s. Last read position: chr1:161,518,076
INFO 2026-06-08 08:21:30 MarkDuplicates Tracking 48560 as yet unmatched pairs. 250 records in RAM.
INFO 2026-06-08 08:21:32 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 1s. Last read position: chr1:168,231,833
INFO 2026-06-08 08:21:32 MarkDuplicates Tracking 49540 as yet unmatched pairs. 144 records in RAM.
INFO 2026-06-08 08:21:33 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr1:172,585,907
INFO 2026-06-08 08:21:33 MarkDuplicates Tracking 50629 as yet unmatched pairs. 153 records in RAM.
INFO 2026-06-08 08:21:36 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 2s. Last read position: chr1:182,385,355
INFO 2026-06-08 08:21:36 MarkDuplicates Tracking 52286 as yet unmatched pairs. 541 records in RAM.
INFO 2026-06-08 08:21:37 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr1:186,336,557
INFO 2026-06-08 08:21:37 MarkDuplicates Tracking 53086 as yet unmatched pairs. 234 records in RAM.
INFO 2026-06-08 08:21:39 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr1:200,912,088
INFO 2026-06-08 08:21:39 MarkDuplicates Tracking 54177 as yet unmatched pairs. 189 records in RAM.
INFO 2026-06-08 08:21:40 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 1s. Last read position: chr1:203,709,324
INFO 2026-06-08 08:21:40 MarkDuplicates Tracking 55335 as yet unmatched pairs. 76 records in RAM.
INFO 2026-06-08 08:21:42 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:206,406,423
INFO 2026-06-08 08:21:42 MarkDuplicates Tracking 56471 as yet unmatched pairs. 86 records in RAM.
INFO 2026-06-08 08:21:43 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 1s. Last read position: chr1:207,785,096
INFO 2026-06-08 08:21:43 MarkDuplicates Tracking 57983 as yet unmatched pairs. 493 records in RAM.
INFO 2026-06-08 08:21:45 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr1:220,879,867
INFO 2026-06-08 08:21:45 MarkDuplicates Tracking 58692 as yet unmatched pairs. 4 records in RAM.
INFO 2026-06-08 08:21:47 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 1s. Last read position: chr1:226,377,190
INFO 2026-06-08 08:21:47 MarkDuplicates Tracking 60051 as yet unmatched pairs. 126 records in RAM.
INFO 2026-06-08 08:21:48 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 1s. Last read position: chr1:231,528,801
INFO 2026-06-08 08:21:48 MarkDuplicates Tracking 61605 as yet unmatched pairs. 190 records in RAM.
INFO 2026-06-08 08:21:49 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr1:243,052,153
INFO 2026-06-08 08:21:49 MarkDuplicates Tracking 62717 as yet unmatched pairs. 0 records in RAM.
INFO 2026-06-08 08:21:51 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 2s. Last read position: chr2:1,693,093
INFO 2026-06-08 08:21:51 MarkDuplicates Tracking 64276 as yet unmatched pairs. 64087 records in RAM.
INFO 2026-06-08 08:21:53 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr2:15,379,798
INFO 2026-06-08 08:21:53 MarkDuplicates Tracking 65427 as yet unmatched pairs. 65231 records in RAM.
INFO 2026-06-08 08:21:54 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr2:24,711,072
INFO 2026-06-08 08:21:54 MarkDuplicates Tracking 66708 as yet unmatched pairs. 66510 records in RAM.
INFO 2026-06-08 08:21:57 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 2s. Last read position: chr2:27,217,832
INFO 2026-06-08 08:21:57 MarkDuplicates Tracking 67925 as yet unmatched pairs. 67720 records in RAM.
INFO 2026-06-08 08:21:59 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 1s. Last read position: chr2:28,799,244
INFO 2026-06-08 08:21:59 MarkDuplicates Tracking 69519 as yet unmatched pairs. 69307 records in RAM.
INFO 2026-06-08 08:22:01 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:22:01 MarkDuplicates Tracking 113833 as yet unmatched pairs. 66709 records in RAM.
INFO 2026-06-08 08:22:03 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:22:03 MarkDuplicates Tracking 546358 as yet unmatched pairs. 37082 records in RAM.
INFO 2026-06-08 08:22:05 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 1s. Last read position: chr2:36,916,124
INFO 2026-06-08 08:22:05 MarkDuplicates Tracking 586056 as yet unmatched pairs. 34270 records in RAM.
INFO 2026-06-08 08:22:06 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 1s. Last read position: chr2:43,224,363
INFO 2026-06-08 08:22:06 MarkDuplicates Tracking 584731 as yet unmatched pairs. 32940 records in RAM.
INFO 2026-06-08 08:22:08 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 1s. Last read position: chr2:47,790,929
INFO 2026-06-08 08:22:08 MarkDuplicates Tracking 583126 as yet unmatched pairs. 31335 records in RAM.
INFO 2026-06-08 08:22:10 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 1s. Last read position: chr2:55,232,816
INFO 2026-06-08 08:22:10 MarkDuplicates Tracking 583135 as yet unmatched pairs. 31341 records in RAM.
INFO 2026-06-08 08:22:11 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 1s. Last read position: chr2:64,552,315
INFO 2026-06-08 08:22:11 MarkDuplicates Tracking 580717 as yet unmatched pairs. 28916 records in RAM.
INFO 2026-06-08 08:22:13 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 1s. Last read position: chr2:70,276,733
INFO 2026-06-08 08:22:13 MarkDuplicates Tracking 579593 as yet unmatched pairs. 27792 records in RAM.
INFO 2026-06-08 08:22:14 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 1s. Last read position: chr2:74,371,611
INFO 2026-06-08 08:22:14 MarkDuplicates Tracking 578497 as yet unmatched pairs. 26691 records in RAM.
INFO 2026-06-08 08:22:16 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 1s. Last read position: chr2:85,553,339
INFO 2026-06-08 08:22:16 MarkDuplicates Tracking 577163 as yet unmatched pairs. 25357 records in RAM.
INFO 2026-06-08 08:22:17 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 1s. Last read position: chr2:95,855,815
INFO 2026-06-08 08:22:17 MarkDuplicates Tracking 576202 as yet unmatched pairs. 24395 records in RAM.
INFO 2026-06-08 08:22:19 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 1s. Last read position: chr2:98,537,875
INFO 2026-06-08 08:22:19 MarkDuplicates Tracking 574798 as yet unmatched pairs. 22989 records in RAM.
INFO 2026-06-08 08:22:20 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 1s. Last read position: chr2:106,424,790
INFO 2026-06-08 08:22:20 MarkDuplicates Tracking 573492 as yet unmatched pairs. 21677 records in RAM.
INFO 2026-06-08 08:22:22 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 1s. Last read position: chr2:109,819,760
INFO 2026-06-08 08:22:22 MarkDuplicates Tracking 572727 as yet unmatched pairs. 20910 records in RAM.
INFO 2026-06-08 08:22:23 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 1s. Last read position: chr2:112,433,397
INFO 2026-06-08 08:22:23 MarkDuplicates Tracking 572166 as yet unmatched pairs. 20345 records in RAM.
INFO 2026-06-08 08:22:24 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 1s. Last read position: chr2:127,318,189
INFO 2026-06-08 08:22:24 MarkDuplicates Tracking 571147 as yet unmatched pairs. 19322 records in RAM.
INFO 2026-06-08 08:22:26 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 2s. Last read position: chr2:138,013,954
INFO 2026-06-08 08:22:26 MarkDuplicates Tracking 569904 as yet unmatched pairs. 18076 records in RAM.
INFO 2026-06-08 08:22:28 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr2:159,320,319
INFO 2026-06-08 08:22:28 MarkDuplicates Tracking 568818 as yet unmatched pairs. 16983 records in RAM.
INFO 2026-06-08 08:22:30 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 1s. Last read position: chr2:171,554,723
INFO 2026-06-08 08:22:30 MarkDuplicates Tracking 567696 as yet unmatched pairs. 15859 records in RAM.
INFO 2026-06-08 08:22:31 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 1s. Last read position: chr2:178,537,091
INFO 2026-06-08 08:22:31 MarkDuplicates Tracking 566545 as yet unmatched pairs. 14707 records in RAM.
INFO 2026-06-08 08:22:33 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 1s. Last read position: chr2:188,993,297
INFO 2026-06-08 08:22:33 MarkDuplicates Tracking 565549 as yet unmatched pairs. 13708 records in RAM.
INFO 2026-06-08 08:22:35 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 1s. Last read position: chr2:196,688,938
INFO 2026-06-08 08:22:35 MarkDuplicates Tracking 564033 as yet unmatched pairs. 12192 records in RAM.
INFO 2026-06-08 08:22:36 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 1s. Last read position: chr2:202,302,969
INFO 2026-06-08 08:22:36 MarkDuplicates Tracking 562900 as yet unmatched pairs. 11058 records in RAM.
INFO 2026-06-08 08:22:38 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 2s. Last read position: chr2:212,538,448
INFO 2026-06-08 08:22:38 MarkDuplicates Tracking 561732 as yet unmatched pairs. 9886 records in RAM.
INFO 2026-06-08 08:22:40 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 2s. Last read position: chr2:215,391,632
INFO 2026-06-08 08:22:40 MarkDuplicates Tracking 562115 as yet unmatched pairs. 10268 records in RAM.
INFO 2026-06-08 08:22:42 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 1s. Last read position: chr2:216,137,168
INFO 2026-06-08 08:22:42 MarkDuplicates Tracking 559507 as yet unmatched pairs. 7660 records in RAM.
INFO 2026-06-08 08:22:44 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr2:218,404,301
INFO 2026-06-08 08:22:44 MarkDuplicates Tracking 558174 as yet unmatched pairs. 6327 records in RAM.
INFO 2026-06-08 08:22:45 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr2:224,844,761
INFO 2026-06-08 08:22:45 MarkDuplicates Tracking 556781 as yet unmatched pairs. 4895 records in RAM.
INFO 2026-06-08 08:22:47 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr2:231,239,968
INFO 2026-06-08 08:22:47 MarkDuplicates Tracking 555646 as yet unmatched pairs. 3754 records in RAM.
INFO 2026-06-08 08:22:48 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 1s. Last read position: chr2:235,042,944
INFO 2026-06-08 08:22:48 MarkDuplicates Tracking 554401 as yet unmatched pairs. 2506 records in RAM.
INFO 2026-06-08 08:22:50 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr2:240,529,399
INFO 2026-06-08 08:22:50 MarkDuplicates Tracking 552962 as yet unmatched pairs. 1066 records in RAM.
INFO 2026-06-08 08:22:51 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 1s. Last read position: chr3:4,981,281
INFO 2026-06-08 08:22:51 MarkDuplicates Tracking 551689 as yet unmatched pairs. 32057 records in RAM.
INFO 2026-06-08 08:22:53 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 1s. Last read position: chr3:11,829,820
INFO 2026-06-08 08:22:53 MarkDuplicates Tracking 550387 as yet unmatched pairs. 30743 records in RAM.
INFO 2026-06-08 08:22:55 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 1s. Last read position: chr3:15,675,897
INFO 2026-06-08 08:22:55 MarkDuplicates Tracking 549084 as yet unmatched pairs. 29437 records in RAM.
INFO 2026-06-08 08:22:57 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 2s. Last read position: chr3:33,072,555
INFO 2026-06-08 08:22:57 MarkDuplicates Tracking 547907 as yet unmatched pairs. 28251 records in RAM.
INFO 2026-06-08 08:22:59 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 1s. Last read position: chr3:39,410,903
INFO 2026-06-08 08:22:59 MarkDuplicates Tracking 547397 as yet unmatched pairs. 27740 records in RAM.
INFO 2026-06-08 08:23:01 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 1s. Last read position: chr3:45,159,816
INFO 2026-06-08 08:23:01 MarkDuplicates Tracking 545278 as yet unmatched pairs. 25617 records in RAM.
INFO 2026-06-08 08:23:02 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 1s. Last read position: chr3:47,661,428
INFO 2026-06-08 08:23:02 MarkDuplicates Tracking 544043 as yet unmatched pairs. 24371 records in RAM.
INFO 2026-06-08 08:23:04 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 1s. Last read position: chr3:48,694,924
INFO 2026-06-08 08:23:04 MarkDuplicates Tracking 542753 as yet unmatched pairs. 23079 records in RAM.
INFO 2026-06-08 08:23:05 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr3:49,358,131
INFO 2026-06-08 08:23:05 MarkDuplicates Tracking 541312 as yet unmatched pairs. 21637 records in RAM.
INFO 2026-06-08 08:23:07 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 1s. Last read position: chr3:50,355,415
INFO 2026-06-08 08:23:07 MarkDuplicates Tracking 539969 as yet unmatched pairs. 20294 records in RAM.
INFO 2026-06-08 08:23:08 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr3:52,495,372
INFO 2026-06-08 08:23:08 MarkDuplicates Tracking 538833 as yet unmatched pairs. 19153 records in RAM.
INFO 2026-06-08 08:23:10 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 2s. Last read position: chr3:53,881,981
INFO 2026-06-08 08:23:10 MarkDuplicates Tracking 537242 as yet unmatched pairs. 17560 records in RAM.
INFO 2026-06-08 08:23:12 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 1s. Last read position: chr3:64,616,086
INFO 2026-06-08 08:23:12 MarkDuplicates Tracking 536233 as yet unmatched pairs. 16547 records in RAM.
INFO 2026-06-08 08:23:14 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 1s. Last read position: chr3:97,843,233
INFO 2026-06-08 08:23:14 MarkDuplicates Tracking 535080 as yet unmatched pairs. 15389 records in RAM.
INFO 2026-06-08 08:23:15 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 1s. Last read position: chr3:105,552,564
INFO 2026-06-08 08:23:15 MarkDuplicates Tracking 534037 as yet unmatched pairs. 14345 records in RAM.
INFO 2026-06-08 08:23:17 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr3:119,675,220
INFO 2026-06-08 08:23:17 MarkDuplicates Tracking 532849 as yet unmatched pairs. 13152 records in RAM.
INFO 2026-06-08 08:23:18 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr3:123,318,024
INFO 2026-06-08 08:23:18 MarkDuplicates Tracking 531621 as yet unmatched pairs. 11916 records in RAM.
INFO 2026-06-08 08:23:20 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 1s. Last read position: chr3:128,626,736
INFO 2026-06-08 08:23:20 MarkDuplicates Tracking 530802 as yet unmatched pairs. 11092 records in RAM.
INFO 2026-06-08 08:23:21 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr3:133,574,226
INFO 2026-06-08 08:23:21 MarkDuplicates Tracking 529044 as yet unmatched pairs. 9334 records in RAM.
INFO 2026-06-08 08:23:24 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 2s. Last read position: chr3:143,028,518
INFO 2026-06-08 08:23:24 MarkDuplicates Tracking 527740 as yet unmatched pairs. 8029 records in RAM.
INFO 2026-06-08 08:23:26 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 2s. Last read position: chr3:156,553,722
INFO 2026-06-08 08:23:26 MarkDuplicates Tracking 526996 as yet unmatched pairs. 7279 records in RAM.
INFO 2026-06-08 08:23:27 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 1s. Last read position: chr3:172,247,591
INFO 2026-06-08 08:23:27 MarkDuplicates Tracking 525349 as yet unmatched pairs. 5627 records in RAM.
INFO 2026-06-08 08:23:29 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr3:184,174,946
INFO 2026-06-08 08:23:29 MarkDuplicates Tracking 524394 as yet unmatched pairs. 4671 records in RAM.
INFO 2026-06-08 08:23:30 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr3:186,789,159
INFO 2026-06-08 08:23:30 MarkDuplicates Tracking 523008 as yet unmatched pairs. 3283 records in RAM.
INFO 2026-06-08 08:23:32 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 1s. Last read position: chr3:194,652,838
INFO 2026-06-08 08:23:32 MarkDuplicates Tracking 521776 as yet unmatched pairs. 2048 records in RAM.
INFO 2026-06-08 08:23:33 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 1s. Last read position: chr3:195,779,658
INFO 2026-06-08 08:23:33 MarkDuplicates Tracking 521582 as yet unmatched pairs. 1853 records in RAM.
INFO 2026-06-08 08:23:34 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr3:196,071,423
INFO 2026-06-08 08:23:34 MarkDuplicates Tracking 520448 as yet unmatched pairs. 712 records in RAM.
INFO 2026-06-08 08:23:36 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 1s. Last read position: chr4:1,212,338
INFO 2026-06-08 08:23:36 MarkDuplicates Tracking 519623 as yet unmatched pairs. 18987 records in RAM.
INFO 2026-06-08 08:23:38 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr4:2,829,929
INFO 2026-06-08 08:23:38 MarkDuplicates Tracking 517543 as yet unmatched pairs. 16906 records in RAM.
INFO 2026-06-08 08:23:39 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr4:7,838,687
INFO 2026-06-08 08:23:39 MarkDuplicates Tracking 516276 as yet unmatched pairs. 15628 records in RAM.
INFO 2026-06-08 08:23:41 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr4:24,549,012
INFO 2026-06-08 08:23:41 MarkDuplicates Tracking 515231 as yet unmatched pairs. 14577 records in RAM.
INFO 2026-06-08 08:23:43 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 2s. Last read position: chr4:40,243,729
INFO 2026-06-08 08:23:43 MarkDuplicates Tracking 513749 as yet unmatched pairs. 13089 records in RAM.
INFO 2026-06-08 08:23:45 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 1s. Last read position: chr4:54,267,300
INFO 2026-06-08 08:23:45 MarkDuplicates Tracking 514905 as yet unmatched pairs. 14238 records in RAM.
INFO 2026-06-08 08:23:46 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 1s. Last read position: chr4:54,295,145
INFO 2026-06-08 08:23:46 MarkDuplicates Tracking 512249 as yet unmatched pairs. 11582 records in RAM.
INFO 2026-06-08 08:23:48 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 1s. Last read position: chr4:72,147,246
INFO 2026-06-08 08:23:48 MarkDuplicates Tracking 510172 as yet unmatched pairs. 9501 records in RAM.
INFO 2026-06-08 08:23:49 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 1s. Last read position: chr4:77,611,061
INFO 2026-06-08 08:23:49 MarkDuplicates Tracking 509091 as yet unmatched pairs. 8419 records in RAM.
INFO 2026-06-08 08:23:51 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 1s. Last read position: chr4:86,935,181
INFO 2026-06-08 08:23:51 MarkDuplicates Tracking 507876 as yet unmatched pairs. 7199 records in RAM.
INFO 2026-06-08 08:23:52 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 1s. Last read position: chr4:101,239,998
INFO 2026-06-08 08:23:52 MarkDuplicates Tracking 506695 as yet unmatched pairs. 6015 records in RAM.
INFO 2026-06-08 08:23:54 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 1s. Last read position: chr4:113,759,355
INFO 2026-06-08 08:23:54 MarkDuplicates Tracking 505687 as yet unmatched pairs. 4996 records in RAM.
INFO 2026-06-08 08:23:55 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr4:128,287,446
INFO 2026-06-08 08:23:55 MarkDuplicates Tracking 504385 as yet unmatched pairs. 3693 records in RAM.
INFO 2026-06-08 08:23:57 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 1s. Last read position: chr4:150,490,952
INFO 2026-06-08 08:23:57 MarkDuplicates Tracking 503308 as yet unmatched pairs. 2612 records in RAM.
INFO 2026-06-08 08:23:58 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 1s. Last read position: chr4:168,406,675
INFO 2026-06-08 08:23:58 MarkDuplicates Tracking 502156 as yet unmatched pairs. 1457 records in RAM.
INFO 2026-06-08 08:24:00 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 1s. Last read position: chr4:186,617,716
INFO 2026-06-08 08:24:00 MarkDuplicates Tracking 500881 as yet unmatched pairs. 182 records in RAM.
INFO 2026-06-08 08:24:02 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 2s. Last read position: chr5:10,680,708
INFO 2026-06-08 08:24:02 MarkDuplicates Tracking 499681 as yet unmatched pairs. 29744 records in RAM.
INFO 2026-06-08 08:24:04 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 1s. Last read position: chr5:14,712,880
INFO 2026-06-08 08:24:04 MarkDuplicates Tracking 498129 as yet unmatched pairs. 28190 records in RAM.
INFO 2026-06-08 08:24:05 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr5:37,443,264
INFO 2026-06-08 08:24:05 MarkDuplicates Tracking 497089 as yet unmatched pairs. 27148 records in RAM.
INFO 2026-06-08 08:24:07 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 1s. Last read position: chr5:54,518,193
INFO 2026-06-08 08:24:07 MarkDuplicates Tracking 495850 as yet unmatched pairs. 25906 records in RAM.
INFO 2026-06-08 08:24:08 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 1s. Last read position: chr5:66,155,025
INFO 2026-06-08 08:24:08 MarkDuplicates Tracking 494744 as yet unmatched pairs. 24794 records in RAM.
INFO 2026-06-08 08:24:09 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr5:72,193,955
INFO 2026-06-08 08:24:09 MarkDuplicates Tracking 493971 as yet unmatched pairs. 24018 records in RAM.
INFO 2026-06-08 08:24:11 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr5:80,255,882
INFO 2026-06-08 08:24:11 MarkDuplicates Tracking 492838 as yet unmatched pairs. 22876 records in RAM.
INFO 2026-06-08 08:24:13 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr5:93,587,962
INFO 2026-06-08 08:24:13 MarkDuplicates Tracking 491856 as yet unmatched pairs. 21893 records in RAM.
INFO 2026-06-08 08:24:14 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 1s. Last read position: chr5:109,713,604
INFO 2026-06-08 08:24:14 MarkDuplicates Tracking 490579 as yet unmatched pairs. 20610 records in RAM.
INFO 2026-06-08 08:24:16 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr5:128,174,614
INFO 2026-06-08 08:24:16 MarkDuplicates Tracking 489503 as yet unmatched pairs. 19527 records in RAM.
INFO 2026-06-08 08:24:17 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr5:134,609,645
INFO 2026-06-08 08:24:17 MarkDuplicates Tracking 488338 as yet unmatched pairs. 18361 records in RAM.
INFO 2026-06-08 08:24:19 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr5:138,930,843
INFO 2026-06-08 08:24:19 MarkDuplicates Tracking 487064 as yet unmatched pairs. 17085 records in RAM.
INFO 2026-06-08 08:24:21 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr5:141,179,363
INFO 2026-06-08 08:24:21 MarkDuplicates Tracking 485838 as yet unmatched pairs. 15724 records in RAM.
INFO 2026-06-08 08:24:23 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 2s. Last read position: chr5:142,873,424
INFO 2026-06-08 08:24:23 MarkDuplicates Tracking 484958 as yet unmatched pairs. 14843 records in RAM.
INFO 2026-06-08 08:24:25 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 1s. Last read position: chr5:150,117,826
INFO 2026-06-08 08:24:25 MarkDuplicates Tracking 483894 as yet unmatched pairs. 13778 records in RAM.
INFO 2026-06-08 08:24:26 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,566
INFO 2026-06-08 08:24:26 MarkDuplicates Tracking 498381 as yet unmatched pairs. 28258 records in RAM.
INFO 2026-06-08 08:24:28 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 1s. Last read position: chr5:150,405,109
INFO 2026-06-08 08:24:28 MarkDuplicates Tracking 491669 as yet unmatched pairs. 21546 records in RAM.
INFO 2026-06-08 08:24:29 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 1s. Last read position: chr5:150,406,909
INFO 2026-06-08 08:24:29 MarkDuplicates Tracking 488763 as yet unmatched pairs. 18633 records in RAM.
INFO 2026-06-08 08:24:31 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr5:150,649,643
INFO 2026-06-08 08:24:31 MarkDuplicates Tracking 478863 as yet unmatched pairs. 8733 records in RAM.
INFO 2026-06-08 08:24:32 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr5:154,794,226
INFO 2026-06-08 08:24:32 MarkDuplicates Tracking 477097 as yet unmatched pairs. 6964 records in RAM.
INFO 2026-06-08 08:24:34 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 1s. Last read position: chr5:170,248,665
INFO 2026-06-08 08:24:34 MarkDuplicates Tracking 475876 as yet unmatched pairs. 5734 records in RAM.
INFO 2026-06-08 08:24:35 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 1s. Last read position: chr5:172,950,558
INFO 2026-06-08 08:24:35 MarkDuplicates Tracking 474671 as yet unmatched pairs. 4526 records in RAM.
INFO 2026-06-08 08:24:37 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 1s. Last read position: chr5:177,524,820
INFO 2026-06-08 08:24:37 MarkDuplicates Tracking 473342 as yet unmatched pairs. 3192 records in RAM.
INFO 2026-06-08 08:24:38 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr5:179,774,794
INFO 2026-06-08 08:24:38 MarkDuplicates Tracking 472468 as yet unmatched pairs. 2314 records in RAM.
INFO 2026-06-08 08:24:40 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr5:180,792,046
INFO 2026-06-08 08:24:40 MarkDuplicates Tracking 470788 as yet unmatched pairs. 634 records in RAM.
INFO 2026-06-08 08:24:41 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 1s. Last read position: chr6:6,145,630
INFO 2026-06-08 08:24:41 MarkDuplicates Tracking 469648 as yet unmatched pairs. 33974 records in RAM.
INFO 2026-06-08 08:24:43 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 1s. Last read position: chr6:13,615,521
INFO 2026-06-08 08:24:43 MarkDuplicates Tracking 468192 as yet unmatched pairs. 32513 records in RAM.
INFO 2026-06-08 08:24:45 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 1s. Last read position: chr6:26,124,571
INFO 2026-06-08 08:24:45 MarkDuplicates Tracking 467007 as yet unmatched pairs. 31316 records in RAM.
INFO 2026-06-08 08:24:46 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 1s. Last read position: chr6:29,723,529
INFO 2026-06-08 08:24:46 MarkDuplicates Tracking 465912 as yet unmatched pairs. 30221 records in RAM.
INFO 2026-06-08 08:24:47 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 1s. Last read position: chr6:30,490,344
INFO 2026-06-08 08:24:47 MarkDuplicates Tracking 465320 as yet unmatched pairs. 29628 records in RAM.
INFO 2026-06-08 08:24:49 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr6:31,137,891
INFO 2026-06-08 08:24:49 MarkDuplicates Tracking 463271 as yet unmatched pairs. 27578 records in RAM.
INFO 2026-06-08 08:24:51 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr6:31,626,829
INFO 2026-06-08 08:24:51 MarkDuplicates Tracking 462213 as yet unmatched pairs. 26518 records in RAM.
INFO 2026-06-08 08:24:52 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr6:31,816,967
INFO 2026-06-08 08:24:52 MarkDuplicates Tracking 460989 as yet unmatched pairs. 25293 records in RAM.
INFO 2026-06-08 08:24:54 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 2s. Last read position: chr6:31,995,421
INFO 2026-06-08 08:24:54 MarkDuplicates Tracking 460391 as yet unmatched pairs. 24695 records in RAM.
INFO 2026-06-08 08:24:56 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr6:32,192,176
INFO 2026-06-08 08:24:56 MarkDuplicates Tracking 459172 as yet unmatched pairs. 23476 records in RAM.
INFO 2026-06-08 08:24:57 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 1s. Last read position: chr6:32,852,415
INFO 2026-06-08 08:24:57 MarkDuplicates Tracking 458421 as yet unmatched pairs. 22724 records in RAM.
INFO 2026-06-08 08:24:59 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 1s. Last read position: chr6:33,289,123
INFO 2026-06-08 08:24:59 MarkDuplicates Tracking 456287 as yet unmatched pairs. 20589 records in RAM.
INFO 2026-06-08 08:25:00 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 1s. Last read position: chr6:34,244,875
INFO 2026-06-08 08:25:00 MarkDuplicates Tracking 454967 as yet unmatched pairs. 19268 records in RAM.
INFO 2026-06-08 08:25:02 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 1s. Last read position: chr6:37,005,804
INFO 2026-06-08 08:25:02 MarkDuplicates Tracking 453851 as yet unmatched pairs. 18149 records in RAM.
INFO 2026-06-08 08:25:03 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 1s. Last read position: chr6:43,037,636
INFO 2026-06-08 08:25:03 MarkDuplicates Tracking 452410 as yet unmatched pairs. 16702 records in RAM.
INFO 2026-06-08 08:25:04 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 1s. Last read position: chr6:44,254,740
INFO 2026-06-08 08:25:04 MarkDuplicates Tracking 451067 as yet unmatched pairs. 15359 records in RAM.
INFO 2026-06-08 08:25:07 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 2s. Last read position: chr6:56,459,059
INFO 2026-06-08 08:25:07 MarkDuplicates Tracking 449933 as yet unmatched pairs. 14223 records in RAM.
INFO 2026-06-08 08:25:08 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr6:75,183,903
INFO 2026-06-08 08:25:08 MarkDuplicates Tracking 448742 as yet unmatched pairs. 13031 records in RAM.
INFO 2026-06-08 08:25:09 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 1s. Last read position: chr6:89,081,394
INFO 2026-06-08 08:25:09 MarkDuplicates Tracking 448360 as yet unmatched pairs. 12640 records in RAM.
INFO 2026-06-08 08:25:11 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 1s. Last read position: chr6:106,971,631
INFO 2026-06-08 08:25:11 MarkDuplicates Tracking 446780 as yet unmatched pairs. 11055 records in RAM.
INFO 2026-06-08 08:25:12 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 1s. Last read position: chr6:113,860,441
INFO 2026-06-08 08:25:12 MarkDuplicates Tracking 445374 as yet unmatched pairs. 9640 records in RAM.
INFO 2026-06-08 08:25:14 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 1s. Last read position: chr6:128,397,601
INFO 2026-06-08 08:25:14 MarkDuplicates Tracking 444139 as yet unmatched pairs. 8402 records in RAM.
INFO 2026-06-08 08:25:15 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 1s. Last read position: chr6:137,878,468
INFO 2026-06-08 08:25:15 MarkDuplicates Tracking 442859 as yet unmatched pairs. 7120 records in RAM.
INFO 2026-06-08 08:25:16 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr6:146,062,065
INFO 2026-06-08 08:25:16 MarkDuplicates Tracking 441517 as yet unmatched pairs. 5774 records in RAM.
INFO 2026-06-08 08:25:19 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 2s. Last read position: chr6:153,282,490
INFO 2026-06-08 08:25:19 MarkDuplicates Tracking 440362 as yet unmatched pairs. 4616 records in RAM.
INFO 2026-06-08 08:25:20 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr6:158,783,557
INFO 2026-06-08 08:25:20 MarkDuplicates Tracking 441641 as yet unmatched pairs. 5889 records in RAM.
INFO 2026-06-08 08:25:22 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr6:159,693,172
INFO 2026-06-08 08:25:22 MarkDuplicates Tracking 437507 as yet unmatched pairs. 1752 records in RAM.
INFO 2026-06-08 08:25:23 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr6:168,509,962
INFO 2026-06-08 08:25:23 MarkDuplicates Tracking 436281 as yet unmatched pairs. 520 records in RAM.
INFO 2026-06-08 08:25:25 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr7:2,362,749
INFO 2026-06-08 08:25:25 MarkDuplicates Tracking 434786 as yet unmatched pairs. 29502 records in RAM.
INFO 2026-06-08 08:25:27 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr7:5,527,684
INFO 2026-06-08 08:25:27 MarkDuplicates Tracking 434896 as yet unmatched pairs. 29611 records in RAM.
INFO 2026-06-08 08:25:29 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 1s. Last read position: chr7:5,529,303
INFO 2026-06-08 08:25:29 MarkDuplicates Tracking 435746 as yet unmatched pairs. 30461 records in RAM.
INFO 2026-06-08 08:25:30 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr7:16,627,102
INFO 2026-06-08 08:25:30 MarkDuplicates Tracking 430907 as yet unmatched pairs. 25616 records in RAM.
INFO 2026-06-08 08:25:32 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 1s. Last read position: chr7:26,197,662
INFO 2026-06-08 08:25:32 MarkDuplicates Tracking 432101 as yet unmatched pairs. 26805 records in RAM.
INFO 2026-06-08 08:25:33 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr7:39,505,463
INFO 2026-06-08 08:25:33 MarkDuplicates Tracking 428509 as yet unmatched pairs. 23209 records in RAM.
INFO 2026-06-08 08:25:35 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 1s. Last read position: chr7:44,571,632
INFO 2026-06-08 08:25:35 MarkDuplicates Tracking 427339 as yet unmatched pairs. 22038 records in RAM.
INFO 2026-06-08 08:25:36 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 1s. Last read position: chr7:55,152,559
INFO 2026-06-08 08:25:36 MarkDuplicates Tracking 426556 as yet unmatched pairs. 21252 records in RAM.
INFO 2026-06-08 08:25:38 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr7:67,281,303
INFO 2026-06-08 08:25:38 MarkDuplicates Tracking 424765 as yet unmatched pairs. 19458 records in RAM.
INFO 2026-06-08 08:25:39 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 1s. Last read position: chr7:73,769,510
INFO 2026-06-08 08:25:39 MarkDuplicates Tracking 424164 as yet unmatched pairs. 18854 records in RAM.
INFO 2026-06-08 08:25:40 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr7:75,389,636
INFO 2026-06-08 08:25:40 MarkDuplicates Tracking 423014 as yet unmatched pairs. 17704 records in RAM.
INFO 2026-06-08 08:25:42 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr7:76,497,411
INFO 2026-06-08 08:25:42 MarkDuplicates Tracking 421902 as yet unmatched pairs. 16591 records in RAM.
INFO 2026-06-08 08:25:43 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 1s. Last read position: chr7:90,412,687
INFO 2026-06-08 08:25:43 MarkDuplicates Tracking 420976 as yet unmatched pairs. 15659 records in RAM.
INFO 2026-06-08 08:25:45 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 1s. Last read position: chr7:96,278,347
INFO 2026-06-08 08:25:45 MarkDuplicates Tracking 419717 as yet unmatched pairs. 14397 records in RAM.
INFO 2026-06-08 08:25:46 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 1s. Last read position: chr7:99,892,153
INFO 2026-06-08 08:25:46 MarkDuplicates Tracking 418427 as yet unmatched pairs. 13102 records in RAM.
INFO 2026-06-08 08:25:48 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 1s. Last read position: chr7:100,813,672
INFO 2026-06-08 08:25:48 MarkDuplicates Tracking 417025 as yet unmatched pairs. 11697 records in RAM.
INFO 2026-06-08 08:25:49 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 1s. Last read position: chr7:102,483,851
INFO 2026-06-08 08:25:49 MarkDuplicates Tracking 415973 as yet unmatched pairs. 10645 records in RAM.
INFO 2026-06-08 08:25:50 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr7:103,075,395
INFO 2026-06-08 08:25:50 MarkDuplicates Tracking 415548 as yet unmatched pairs. 10220 records in RAM.
INFO 2026-06-08 08:25:52 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr7:107,926,303
INFO 2026-06-08 08:25:52 MarkDuplicates Tracking 414403 as yet unmatched pairs. 9071 records in RAM.
INFO 2026-06-08 08:25:53 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 1s. Last read position: chr7:127,652,421
INFO 2026-06-08 08:25:53 MarkDuplicates Tracking 414022 as yet unmatched pairs. 8686 records in RAM.
INFO 2026-06-08 08:25:55 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr7:130,173,636
INFO 2026-06-08 08:25:55 MarkDuplicates Tracking 411952 as yet unmatched pairs. 6616 records in RAM.
INFO 2026-06-08 08:25:56 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr7:138,916,855
INFO 2026-06-08 08:25:56 MarkDuplicates Tracking 410811 as yet unmatched pairs. 5467 records in RAM.
INFO 2026-06-08 08:25:58 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr7:142,802,171
INFO 2026-06-08 08:25:58 MarkDuplicates Tracking 409749 as yet unmatched pairs. 4405 records in RAM.
INFO 2026-06-08 08:25:59 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 1s. Last read position: chr7:149,012,151
INFO 2026-06-08 08:25:59 MarkDuplicates Tracking 408586 as yet unmatched pairs. 3240 records in RAM.
INFO 2026-06-08 08:26:01 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 2s. Last read position: chr7:151,076,287
INFO 2026-06-08 08:26:01 MarkDuplicates Tracking 407166 as yet unmatched pairs. 1817 records in RAM.
INFO 2026-06-08 08:26:02 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 1s. Last read position: chr7:157,181,629
INFO 2026-06-08 08:26:02 MarkDuplicates Tracking 405732 as yet unmatched pairs. 381 records in RAM.
INFO 2026-06-08 08:26:04 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 1s. Last read position: chr8:11,849,065
INFO 2026-06-08 08:26:04 MarkDuplicates Tracking 405008 as yet unmatched pairs. 22143 records in RAM.
INFO 2026-06-08 08:26:06 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 2s. Last read position: chr8:22,417,698
INFO 2026-06-08 08:26:06 MarkDuplicates Tracking 403345 as yet unmatched pairs. 20476 records in RAM.
INFO 2026-06-08 08:26:08 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr8:26,408,026
INFO 2026-06-08 08:26:08 MarkDuplicates Tracking 401887 as yet unmatched pairs. 19016 records in RAM.
INFO 2026-06-08 08:26:09 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 1s. Last read position: chr8:33,412,952
INFO 2026-06-08 08:26:09 MarkDuplicates Tracking 400667 as yet unmatched pairs. 17794 records in RAM.
INFO 2026-06-08 08:26:11 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 1s. Last read position: chr8:38,819,851
INFO 2026-06-08 08:26:11 MarkDuplicates Tracking 400082 as yet unmatched pairs. 17209 records in RAM.
INFO 2026-06-08 08:26:12 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr8:42,316,743
INFO 2026-06-08 08:26:12 MarkDuplicates Tracking 398311 as yet unmatched pairs. 15436 records in RAM.
INFO 2026-06-08 08:26:14 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 1s. Last read position: chr8:55,782,752
INFO 2026-06-08 08:26:14 MarkDuplicates Tracking 396807 as yet unmatched pairs. 13930 records in RAM.
INFO 2026-06-08 08:26:15 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 1s. Last read position: chr8:67,299,248
INFO 2026-06-08 08:26:15 MarkDuplicates Tracking 395735 as yet unmatched pairs. 12854 records in RAM.
INFO 2026-06-08 08:26:17 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr8:80,641,448
INFO 2026-06-08 08:26:17 MarkDuplicates Tracking 394388 as yet unmatched pairs. 11504 records in RAM.
INFO 2026-06-08 08:26:18 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr8:98,715,296
INFO 2026-06-08 08:26:18 MarkDuplicates Tracking 393165 as yet unmatched pairs. 10280 records in RAM.
INFO 2026-06-08 08:26:20 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr8:102,305,111
INFO 2026-06-08 08:26:20 MarkDuplicates Tracking 392185 as yet unmatched pairs. 9299 records in RAM.
INFO 2026-06-08 08:26:21 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr8:120,283,765
INFO 2026-06-08 08:26:21 MarkDuplicates Tracking 390916 as yet unmatched pairs. 8029 records in RAM.
INFO 2026-06-08 08:26:23 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr8:133,284,293
INFO 2026-06-08 08:26:23 MarkDuplicates Tracking 389556 as yet unmatched pairs. 6668 records in RAM.
INFO 2026-06-08 08:26:24 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr8:143,580,190
INFO 2026-06-08 08:26:24 MarkDuplicates Tracking 388192 as yet unmatched pairs. 5298 records in RAM.
INFO 2026-06-08 08:26:25 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 1s. Last read position: chr8:143,860,323
INFO 2026-06-08 08:26:25 MarkDuplicates Tracking 387593 as yet unmatched pairs. 4697 records in RAM.
INFO 2026-06-08 08:26:27 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,685
INFO 2026-06-08 08:26:27 MarkDuplicates Tracking 387022 as yet unmatched pairs. 4124 records in RAM.
INFO 2026-06-08 08:26:28 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr8:143,919,811
INFO 2026-06-08 08:26:28 MarkDuplicates Tracking 386040 as yet unmatched pairs. 3142 records in RAM.
INFO 2026-06-08 08:26:29 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 1s. Last read position: chr8:144,096,484
INFO 2026-06-08 08:26:29 MarkDuplicates Tracking 384360 as yet unmatched pairs. 1456 records in RAM.
INFO 2026-06-08 08:26:31 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr9:311,951
INFO 2026-06-08 08:26:31 MarkDuplicates Tracking 382895 as yet unmatched pairs. 25506 records in RAM.
INFO 2026-06-08 08:26:32 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr9:9,442,159
INFO 2026-06-08 08:26:32 MarkDuplicates Tracking 381636 as yet unmatched pairs. 24233 records in RAM.
INFO 2026-06-08 08:26:34 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 1s. Last read position: chr9:32,448,901
INFO 2026-06-08 08:26:34 MarkDuplicates Tracking 380603 as yet unmatched pairs. 23197 records in RAM.
INFO 2026-06-08 08:26:35 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr9:35,045,625
INFO 2026-06-08 08:26:35 MarkDuplicates Tracking 379356 as yet unmatched pairs. 21949 records in RAM.
INFO 2026-06-08 08:26:37 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr9:35,829,546
INFO 2026-06-08 08:26:37 MarkDuplicates Tracking 377962 as yet unmatched pairs. 20554 records in RAM.
INFO 2026-06-08 08:26:38 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr9:69,252,817
INFO 2026-06-08 08:26:38 MarkDuplicates Tracking 376987 as yet unmatched pairs. 19503 records in RAM.
INFO 2026-06-08 08:26:40 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 2s. Last read position: chr9:86,035,493
INFO 2026-06-08 08:26:40 MarkDuplicates Tracking 375804 as yet unmatched pairs. 18318 records in RAM.
INFO 2026-06-08 08:26:42 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 1s. Last read position: chr9:93,557,846
INFO 2026-06-08 08:26:42 MarkDuplicates Tracking 374417 as yet unmatched pairs. 16927 records in RAM.
INFO 2026-06-08 08:26:43 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 1s. Last read position: chr9:101,408,060
INFO 2026-06-08 08:26:43 MarkDuplicates Tracking 373031 as yet unmatched pairs. 15540 records in RAM.
INFO 2026-06-08 08:26:44 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 1s. Last read position: chr9:111,727,870
INFO 2026-06-08 08:26:44 MarkDuplicates Tracking 371784 as yet unmatched pairs. 14292 records in RAM.
INFO 2026-06-08 08:26:46 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 1s. Last read position: chr9:115,031,614
INFO 2026-06-08 08:26:46 MarkDuplicates Tracking 370541 as yet unmatched pairs. 13048 records in RAM.
INFO 2026-06-08 08:26:48 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr9:121,341,144
INFO 2026-06-08 08:26:48 MarkDuplicates Tracking 369298 as yet unmatched pairs. 11805 records in RAM.
INFO 2026-06-08 08:26:49 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr9:125,929,746
INFO 2026-06-08 08:26:49 MarkDuplicates Tracking 367957 as yet unmatched pairs. 10455 records in RAM.
INFO 2026-06-08 08:26:51 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr9:128,149,515
INFO 2026-06-08 08:26:51 MarkDuplicates Tracking 367892 as yet unmatched pairs. 10388 records in RAM.
INFO 2026-06-08 08:26:53 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr9:128,607,603
INFO 2026-06-08 08:26:53 MarkDuplicates Tracking 365453 as yet unmatched pairs. 7949 records in RAM.
INFO 2026-06-08 08:26:54 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr9:130,452,311
INFO 2026-06-08 08:26:54 MarkDuplicates Tracking 364873 as yet unmatched pairs. 7365 records in RAM.
INFO 2026-06-08 08:26:56 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr9:131,467,644
INFO 2026-06-08 08:26:56 MarkDuplicates Tracking 363164 as yet unmatched pairs. 5654 records in RAM.
INFO 2026-06-08 08:26:57 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr9:133,367,382
INFO 2026-06-08 08:26:57 MarkDuplicates Tracking 361937 as yet unmatched pairs. 4427 records in RAM.
INFO 2026-06-08 08:26:59 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 1s. Last read position: chr9:136,418,829
INFO 2026-06-08 08:26:59 MarkDuplicates Tracking 360274 as yet unmatched pairs. 2761 records in RAM.
INFO 2026-06-08 08:27:00 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 1s. Last read position: chr9:136,979,055
INFO 2026-06-08 08:27:00 MarkDuplicates Tracking 359234 as yet unmatched pairs. 1719 records in RAM.
INFO 2026-06-08 08:27:02 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr10:384,586
INFO 2026-06-08 08:27:02 MarkDuplicates Tracking 357492 as yet unmatched pairs. 20709 records in RAM.
INFO 2026-06-08 08:27:04 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr10:7,576,963
INFO 2026-06-08 08:27:04 MarkDuplicates Tracking 356403 as yet unmatched pairs. 19617 records in RAM.
INFO 2026-06-08 08:27:05 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 1s. Last read position: chr10:20,001,921
INFO 2026-06-08 08:27:05 MarkDuplicates Tracking 355088 as yet unmatched pairs. 18300 records in RAM.
INFO 2026-06-08 08:28:07 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:07:46s. Time for last 1,000,000: 61s. Last read position: chr10:30,029,574
INFO 2026-06-08 08:28:07 MarkDuplicates Tracking 353977 as yet unmatched pairs. 17187 records in RAM.
INFO 2026-06-08 08:28:09 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:07:48s. Time for last 1,000,000: 1s. Last read position: chr10:35,010,336
INFO 2026-06-08 08:28:09 MarkDuplicates Tracking 352865 as yet unmatched pairs. 16073 records in RAM.
INFO 2026-06-08 08:28:10 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:07:49s. Time for last 1,000,000: 1s. Last read position: chr10:46,011,104
INFO 2026-06-08 08:28:10 MarkDuplicates Tracking 352240 as yet unmatched pairs. 15447 records in RAM.
INFO 2026-06-08 08:28:12 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:07:51s. Time for last 1,000,000: 1s. Last read position: chr10:51,699,452
INFO 2026-06-08 08:28:12 MarkDuplicates Tracking 350913 as yet unmatched pairs. 14120 records in RAM.
INFO 2026-06-08 08:28:13 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:07:53s. Time for last 1,000,000: 1s. Last read position: chr10:68,989,216
INFO 2026-06-08 08:28:13 MarkDuplicates Tracking 349724 as yet unmatched pairs. 12928 records in RAM.
INFO 2026-06-08 08:28:15 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:07:54s. Time for last 1,000,000: 1s. Last read position: chr10:73,426,280
INFO 2026-06-08 08:28:15 MarkDuplicates Tracking 348417 as yet unmatched pairs. 11617 records in RAM.
INFO 2026-06-08 08:28:17 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:07:56s. Time for last 1,000,000: 2s. Last read position: chr10:78,035,362
INFO 2026-06-08 08:28:17 MarkDuplicates Tracking 347494 as yet unmatched pairs. 10694 records in RAM.
INFO 2026-06-08 08:28:19 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:07:58s. Time for last 1,000,000: 1s. Last read position: chr10:86,970,219
INFO 2026-06-08 08:28:19 MarkDuplicates Tracking 346210 as yet unmatched pairs. 9404 records in RAM.
INFO 2026-06-08 08:28:20 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:07:59s. Time for last 1,000,000: 1s. Last read position: chr10:92,974,115
INFO 2026-06-08 08:28:20 MarkDuplicates Tracking 344985 as yet unmatched pairs. 8176 records in RAM.
INFO 2026-06-08 08:28:22 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:01s. Time for last 1,000,000: 1s. Last read position: chr10:97,385,961
INFO 2026-06-08 08:28:22 MarkDuplicates Tracking 343805 as yet unmatched pairs. 6994 records in RAM.
INFO 2026-06-08 08:28:23 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:03s. Time for last 1,000,000: 1s. Last read position: chr10:101,990,551
INFO 2026-06-08 08:28:23 MarkDuplicates Tracking 342462 as yet unmatched pairs. 5647 records in RAM.
INFO 2026-06-08 08:28:25 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:08:04s. Time for last 1,000,000: 1s. Last read position: chr10:103,440,431
INFO 2026-06-08 08:28:25 MarkDuplicates Tracking 341089 as yet unmatched pairs. 4273 records in RAM.
INFO 2026-06-08 08:28:27 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:08:06s. Time for last 1,000,000: 1s. Last read position: chr10:114,847,094
INFO 2026-06-08 08:28:27 MarkDuplicates Tracking 339941 as yet unmatched pairs. 3119 records in RAM.
INFO 2026-06-08 08:28:28 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:08:08s. Time for last 1,000,000: 1s. Last read position: chr10:121,843,594
INFO 2026-06-08 08:28:28 MarkDuplicates Tracking 338708 as yet unmatched pairs. 1885 records in RAM.
INFO 2026-06-08 08:28:30 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:08:09s. Time for last 1,000,000: 1s. Last read position: chr10:128,077,685
INFO 2026-06-08 08:28:30 MarkDuplicates Tracking 337637 as yet unmatched pairs. 814 records in RAM.
INFO 2026-06-08 08:28:32 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:08:11s. Time for last 1,000,000: 1s. Last read position: chr11:314,282
INFO 2026-06-08 08:28:32 MarkDuplicates Tracking 337860 as yet unmatched pairs. 40766 records in RAM.
INFO 2026-06-08 08:28:33 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:08:12s. Time for last 1,000,000: 1s. Last read position: chr11:609,593
INFO 2026-06-08 08:28:33 MarkDuplicates Tracking 334937 as yet unmatched pairs. 37842 records in RAM.
INFO 2026-06-08 08:28:34 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:08:14s. Time for last 1,000,000: 1s. Last read position: chr11:1,763,814
INFO 2026-06-08 08:28:34 MarkDuplicates Tracking 333447 as yet unmatched pairs. 36347 records in RAM.
INFO 2026-06-08 08:28:37 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:08:16s. Time for last 1,000,000: 2s. Last read position: chr11:4,518,655
INFO 2026-06-08 08:28:37 MarkDuplicates Tracking 332106 as yet unmatched pairs. 35006 records in RAM.
INFO 2026-06-08 08:28:38 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:08:17s. Time for last 1,000,000: 1s. Last read position: chr11:8,684,808
INFO 2026-06-08 08:28:38 MarkDuplicates Tracking 331423 as yet unmatched pairs. 34322 records in RAM.
INFO 2026-06-08 08:28:40 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:08:19s. Time for last 1,000,000: 1s. Last read position: chr11:10,804,402
INFO 2026-06-08 08:28:40 MarkDuplicates Tracking 329781 as yet unmatched pairs. 32680 records in RAM.
INFO 2026-06-08 08:28:41 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:08:20s. Time for last 1,000,000: 1s. Last read position: chr11:18,333,131
INFO 2026-06-08 08:28:41 MarkDuplicates Tracking 328451 as yet unmatched pairs. 31335 records in RAM.
INFO 2026-06-08 08:28:43 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:08:22s. Time for last 1,000,000: 2s. Last read position: chr11:34,357,460
INFO 2026-06-08 08:28:43 MarkDuplicates Tracking 327213 as yet unmatched pairs. 30096 records in RAM.
INFO 2026-06-08 08:28:45 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:08:24s. Time for last 1,000,000: 1s. Last read position: chr11:46,311,124
INFO 2026-06-08 08:28:45 MarkDuplicates Tracking 326271 as yet unmatched pairs. 29153 records in RAM.
INFO 2026-06-08 08:28:46 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:08:25s. Time for last 1,000,000: 1s. Last read position: chr11:47,754,505
INFO 2026-06-08 08:28:46 MarkDuplicates Tracking 324817 as yet unmatched pairs. 27698 records in RAM.
INFO 2026-06-08 08:28:47 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:08:26s. Time for last 1,000,000: 1s. Last read position: chr11:57,796,504
INFO 2026-06-08 08:28:47 MarkDuplicates Tracking 323682 as yet unmatched pairs. 26563 records in RAM.
INFO 2026-06-08 08:28:49 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:08:28s. Time for last 1,000,000: 1s. Last read position: chr11:61,008,451
INFO 2026-06-08 08:28:49 MarkDuplicates Tracking 322236 as yet unmatched pairs. 25117 records in RAM.
INFO 2026-06-08 08:28:51 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:08:30s. Time for last 1,000,000: 1s. Last read position: chr11:62,521,999
INFO 2026-06-08 08:28:51 MarkDuplicates Tracking 321403 as yet unmatched pairs. 24270 records in RAM.
INFO 2026-06-08 08:28:52 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 1s. Last read position: chr11:62,596,477
INFO 2026-06-08 08:28:52 MarkDuplicates Tracking 320303 as yet unmatched pairs. 23168 records in RAM.
INFO 2026-06-08 08:28:53 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 1s. Last read position: chr11:63,904,856
INFO 2026-06-08 08:28:53 MarkDuplicates Tracking 318759 as yet unmatched pairs. 21622 records in RAM.
INFO 2026-06-08 08:28:55 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:08:34s. Time for last 1,000,000: 1s. Last read position: chr11:64,769,988
INFO 2026-06-08 08:28:55 MarkDuplicates Tracking 317401 as yet unmatched pairs. 20263 records in RAM.
INFO 2026-06-08 08:28:56 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 1s. Last read position: chr11:65,500,971
INFO 2026-06-08 08:28:56 MarkDuplicates Tracking 315750 as yet unmatched pairs. 18609 records in RAM.
INFO 2026-06-08 08:28:58 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 1s. Last read position: chr11:65,654,724
INFO 2026-06-08 08:28:58 MarkDuplicates Tracking 314818 as yet unmatched pairs. 17675 records in RAM.
INFO 2026-06-08 08:28:59 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 1s. Last read position: chr11:66,235,315
INFO 2026-06-08 08:28:59 MarkDuplicates Tracking 312932 as yet unmatched pairs. 15789 records in RAM.
INFO 2026-06-08 08:29:01 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 1s. Last read position: chr11:67,353,191
INFO 2026-06-08 08:29:01 MarkDuplicates Tracking 311410 as yet unmatched pairs. 14265 records in RAM.
INFO 2026-06-08 08:29:02 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 1s. Last read position: chr11:68,596,182
INFO 2026-06-08 08:29:02 MarkDuplicates Tracking 310005 as yet unmatched pairs. 12858 records in RAM.
INFO 2026-06-08 08:29:04 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 1s. Last read position: chr11:72,017,751
INFO 2026-06-08 08:29:04 MarkDuplicates Tracking 308799 as yet unmatched pairs. 11646 records in RAM.
INFO 2026-06-08 08:29:05 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 1s. Last read position: chr11:74,835,886
INFO 2026-06-08 08:29:05 MarkDuplicates Tracking 307471 as yet unmatched pairs. 10317 records in RAM.
INFO 2026-06-08 08:29:07 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 1s. Last read position: chr11:82,689,773
INFO 2026-06-08 08:29:07 MarkDuplicates Tracking 306197 as yet unmatched pairs. 9041 records in RAM.
INFO 2026-06-08 08:29:08 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 1s. Last read position: chr11:95,129,379
INFO 2026-06-08 08:29:08 MarkDuplicates Tracking 305129 as yet unmatched pairs. 7969 records in RAM.
INFO 2026-06-08 08:29:10 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 1s. Last read position: chr11:105,029,190
INFO 2026-06-08 08:29:10 MarkDuplicates Tracking 304026 as yet unmatched pairs. 6865 records in RAM.
INFO 2026-06-08 08:29:11 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 1s. Last read position: chr11:117,152,513
INFO 2026-06-08 08:29:11 MarkDuplicates Tracking 302838 as yet unmatched pairs. 5676 records in RAM.
INFO 2026-06-08 08:29:13 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 1s. Last read position: chr11:118,534,527
INFO 2026-06-08 08:29:13 MarkDuplicates Tracking 301472 as yet unmatched pairs. 4308 records in RAM.
INFO 2026-06-08 08:29:15 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 2s. Last read position: chr11:119,665,033
INFO 2026-06-08 08:29:15 MarkDuplicates Tracking 300364 as yet unmatched pairs. 3200 records in RAM.
INFO 2026-06-08 08:29:17 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 1s. Last read position: chr11:124,624,959
INFO 2026-06-08 08:29:17 MarkDuplicates Tracking 299106 as yet unmatched pairs. 1941 records in RAM.
INFO 2026-06-08 08:29:18 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr11:130,109,446
INFO 2026-06-08 08:29:18 MarkDuplicates Tracking 298153 as yet unmatched pairs. 981 records in RAM.
INFO 2026-06-08 08:29:20 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 2s. Last read position: chr12:1,593,068
INFO 2026-06-08 08:29:20 MarkDuplicates Tracking 296732 as yet unmatched pairs. 36005 records in RAM.
INFO 2026-06-08 08:29:22 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 1s. Last read position: chr12:6,329,794
INFO 2026-06-08 08:29:22 MarkDuplicates Tracking 295725 as yet unmatched pairs. 34997 records in RAM.
INFO 2026-06-08 08:29:24 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr12:6,856,245
INFO 2026-06-08 08:29:24 MarkDuplicates Tracking 293982 as yet unmatched pairs. 33254 records in RAM.
INFO 2026-06-08 08:29:25 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr12:7,088,709
INFO 2026-06-08 08:29:25 MarkDuplicates Tracking 292985 as yet unmatched pairs. 32257 records in RAM.
INFO 2026-06-08 08:29:27 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 1s. Last read position: chr12:9,072,658
INFO 2026-06-08 08:29:27 MarkDuplicates Tracking 291974 as yet unmatched pairs. 31246 records in RAM.
INFO 2026-06-08 08:29:28 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr12:9,755,175
INFO 2026-06-08 08:29:28 MarkDuplicates Tracking 290308 as yet unmatched pairs. 29580 records in RAM.
INFO 2026-06-08 08:29:30 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 1s. Last read position: chr12:14,787,164
INFO 2026-06-08 08:29:30 MarkDuplicates Tracking 289076 as yet unmatched pairs. 28345 records in RAM.
INFO 2026-06-08 08:29:32 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr12:27,676,427
INFO 2026-06-08 08:29:32 MarkDuplicates Tracking 287844 as yet unmatched pairs. 27110 records in RAM.
INFO 2026-06-08 08:29:33 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 1s. Last read position: chr12:46,361,128
INFO 2026-06-08 08:29:33 MarkDuplicates Tracking 287059 as yet unmatched pairs. 26325 records in RAM.
INFO 2026-06-08 08:29:35 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 1s. Last read position: chr12:49,041,234
INFO 2026-06-08 08:29:35 MarkDuplicates Tracking 285432 as yet unmatched pairs. 24696 records in RAM.
INFO 2026-06-08 08:29:36 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 1s. Last read position: chr12:49,741,601
INFO 2026-06-08 08:29:36 MarkDuplicates Tracking 284800 as yet unmatched pairs. 24064 records in RAM.
INFO 2026-06-08 08:29:38 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr12:52,235,250
INFO 2026-06-08 08:29:38 MarkDuplicates Tracking 283206 as yet unmatched pairs. 22467 records in RAM.
INFO 2026-06-08 08:29:39 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 1s. Last read position: chr12:53,455,354
INFO 2026-06-08 08:29:39 MarkDuplicates Tracking 282333 as yet unmatched pairs. 21594 records in RAM.
INFO 2026-06-08 08:29:41 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr12:54,520,785
INFO 2026-06-08 08:29:41 MarkDuplicates Tracking 280714 as yet unmatched pairs. 19975 records in RAM.
INFO 2026-06-08 08:29:42 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr12:56,160,242
INFO 2026-06-08 08:29:42 MarkDuplicates Tracking 280617 as yet unmatched pairs. 19876 records in RAM.
INFO 2026-06-08 08:29:44 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr12:56,712,826
INFO 2026-06-08 08:29:44 MarkDuplicates Tracking 278886 as yet unmatched pairs. 18142 records in RAM.
INFO 2026-06-08 08:29:45 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr12:57,104,800
INFO 2026-06-08 08:29:45 MarkDuplicates Tracking 278168 as yet unmatched pairs. 17424 records in RAM.
INFO 2026-06-08 08:29:47 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 1s. Last read position: chr12:57,199,977
INFO 2026-06-08 08:29:47 MarkDuplicates Tracking 275987 as yet unmatched pairs. 15242 records in RAM.
INFO 2026-06-08 08:29:49 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr12:57,751,640
INFO 2026-06-08 08:29:49 MarkDuplicates Tracking 274587 as yet unmatched pairs. 13842 records in RAM.
INFO 2026-06-08 08:29:50 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr12:68,839,333
INFO 2026-06-08 08:29:50 MarkDuplicates Tracking 273478 as yet unmatched pairs. 12730 records in RAM.
INFO 2026-06-08 08:29:52 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr12:89,349,305
INFO 2026-06-08 08:29:52 MarkDuplicates Tracking 272298 as yet unmatched pairs. 11549 records in RAM.
INFO 2026-06-08 08:29:55 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 2s. Last read position: chr12:96,013,204
INFO 2026-06-08 08:29:55 MarkDuplicates Tracking 271395 as yet unmatched pairs. 10646 records in RAM.
INFO 2026-06-08 08:29:57 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr12:105,107,804
INFO 2026-06-08 08:29:57 MarkDuplicates Tracking 270083 as yet unmatched pairs. 9334 records in RAM.
INFO 2026-06-08 08:29:58 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr12:110,340,796
INFO 2026-06-08 08:29:58 MarkDuplicates Tracking 268880 as yet unmatched pairs. 8131 records in RAM.
INFO 2026-06-08 08:30:00 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 1s. Last read position: chr12:112,907,049
INFO 2026-06-08 08:30:00 MarkDuplicates Tracking 267832 as yet unmatched pairs. 7082 records in RAM.
INFO 2026-06-08 08:30:01 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 1s. Last read position: chr12:118,034,228
INFO 2026-06-08 08:30:01 MarkDuplicates Tracking 266109 as yet unmatched pairs. 5359 records in RAM.
INFO 2026-06-08 08:30:03 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 1s. Last read position: chr12:121,240,336
INFO 2026-06-08 08:30:03 MarkDuplicates Tracking 264864 as yet unmatched pairs. 4112 records in RAM.
INFO 2026-06-08 08:30:04 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr12:122,988,730
INFO 2026-06-08 08:30:04 MarkDuplicates Tracking 263534 as yet unmatched pairs. 2781 records in RAM.
INFO 2026-06-08 08:30:05 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr12:131,714,837
INFO 2026-06-08 08:30:05 MarkDuplicates Tracking 262167 as yet unmatched pairs. 1413 records in RAM.
INFO 2026-06-08 08:30:07 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr13:19,659,016
INFO 2026-06-08 08:30:07 MarkDuplicates Tracking 260759 as yet unmatched pairs. 8393 records in RAM.
INFO 2026-06-08 08:30:08 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 1s. Last read position: chr13:27,440,167
INFO 2026-06-08 08:30:08 MarkDuplicates Tracking 259664 as yet unmatched pairs. 7298 records in RAM.
INFO 2026-06-08 08:30:10 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr13:40,665,840
INFO 2026-06-08 08:30:10 MarkDuplicates Tracking 258662 as yet unmatched pairs. 6292 records in RAM.
INFO 2026-06-08 08:30:11 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 1s. Last read position: chr13:46,728,861
INFO 2026-06-08 08:30:11 MarkDuplicates Tracking 257354 as yet unmatched pairs. 4982 records in RAM.
INFO 2026-06-08 08:30:13 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr13:75,481,564
INFO 2026-06-08 08:30:13 MarkDuplicates Tracking 256135 as yet unmatched pairs. 3761 records in RAM.
INFO 2026-06-08 08:30:14 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr13:98,474,856
INFO 2026-06-08 08:30:14 MarkDuplicates Tracking 254947 as yet unmatched pairs. 2569 records in RAM.
INFO 2026-06-08 08:30:16 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr13:110,478,043
INFO 2026-06-08 08:30:16 MarkDuplicates Tracking 253545 as yet unmatched pairs. 1167 records in RAM.
INFO 2026-06-08 08:30:18 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr14:20,408,340
INFO 2026-06-08 08:30:18 MarkDuplicates Tracking 252453 as yet unmatched pairs. 21088 records in RAM.
INFO 2026-06-08 08:30:19 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr14:22,813,301
INFO 2026-06-08 08:30:19 MarkDuplicates Tracking 251033 as yet unmatched pairs. 19668 records in RAM.
INFO 2026-06-08 08:30:20 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 1s. Last read position: chr14:23,638,867
INFO 2026-06-08 08:30:20 MarkDuplicates Tracking 250230 as yet unmatched pairs. 18862 records in RAM.
INFO 2026-06-08 08:30:22 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 1s. Last read position: chr14:24,369,245
INFO 2026-06-08 08:30:22 MarkDuplicates Tracking 248373 as yet unmatched pairs. 17004 records in RAM.
INFO 2026-06-08 08:30:24 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 1s. Last read position: chr14:35,402,001
INFO 2026-06-08 08:30:24 MarkDuplicates Tracking 247749 as yet unmatched pairs. 16374 records in RAM.
INFO 2026-06-08 08:30:25 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr14:49,862,590
INFO 2026-06-08 08:30:25 MarkDuplicates Tracking 246171 as yet unmatched pairs. 14794 records in RAM.
INFO 2026-06-08 08:30:26 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 1s. Last read position: chr14:55,639,193
INFO 2026-06-08 08:30:26 MarkDuplicates Tracking 245294 as yet unmatched pairs. 13915 records in RAM.
INFO 2026-06-08 08:30:29 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 2s. Last read position: chr14:64,055,986
INFO 2026-06-08 08:30:29 MarkDuplicates Tracking 243641 as yet unmatched pairs. 12261 records in RAM.
INFO 2026-06-08 08:30:31 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 2s. Last read position: chr14:68,790,377
INFO 2026-06-08 08:30:31 MarkDuplicates Tracking 243699 as yet unmatched pairs. 12318 records in RAM.
INFO 2026-06-08 08:30:33 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 1s. Last read position: chr14:73,148,036
INFO 2026-06-08 08:30:33 MarkDuplicates Tracking 241279 as yet unmatched pairs. 9895 records in RAM.
INFO 2026-06-08 08:30:34 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr14:75,117,304
INFO 2026-06-08 08:30:34 MarkDuplicates Tracking 239922 as yet unmatched pairs. 8537 records in RAM.
INFO 2026-06-08 08:30:36 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 1s. Last read position: chr14:90,404,377
INFO 2026-06-08 08:30:36 MarkDuplicates Tracking 238909 as yet unmatched pairs. 7521 records in RAM.
INFO 2026-06-08 08:30:37 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr14:95,113,204
INFO 2026-06-08 08:30:37 MarkDuplicates Tracking 237329 as yet unmatched pairs. 5939 records in RAM.
INFO 2026-06-08 08:30:39 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr14:102,001,332
INFO 2026-06-08 08:30:39 MarkDuplicates Tracking 236198 as yet unmatched pairs. 4784 records in RAM.
INFO 2026-06-08 08:30:40 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr14:103,130,055
INFO 2026-06-08 08:30:40 MarkDuplicates Tracking 235506 as yet unmatched pairs. 4091 records in RAM.
INFO 2026-06-08 08:30:41 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr14:105,145,734
INFO 2026-06-08 08:30:41 MarkDuplicates Tracking 233297 as yet unmatched pairs. 1882 records in RAM.
INFO 2026-06-08 08:30:43 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 1s. Last read position: chr14:105,707,384
INFO 2026-06-08 08:30:43 MarkDuplicates Tracking 232917 as yet unmatched pairs. 1502 records in RAM.
INFO 2026-06-08 08:30:45 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 1s. Last read position: chr15:23,687,028
INFO 2026-06-08 08:30:45 MarkDuplicates Tracking 231146 as yet unmatched pairs. 20587 records in RAM.
INFO 2026-06-08 08:30:46 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr15:32,731,624
INFO 2026-06-08 08:30:46 MarkDuplicates Tracking 230319 as yet unmatched pairs. 19753 records in RAM.
INFO 2026-06-08 08:30:47 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 1s. Last read position: chr15:39,593,123
INFO 2026-06-08 08:30:47 MarkDuplicates Tracking 229527 as yet unmatched pairs. 18959 records in RAM.
INFO 2026-06-08 08:30:49 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 1s. Last read position: chr15:41,818,033
INFO 2026-06-08 08:30:49 MarkDuplicates Tracking 227928 as yet unmatched pairs. 17357 records in RAM.
INFO 2026-06-08 08:30:50 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 1s. Last read position: chr15:43,768,489
INFO 2026-06-08 08:30:50 MarkDuplicates Tracking 227681 as yet unmatched pairs. 17110 records in RAM.
INFO 2026-06-08 08:30:52 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr15:45,095,881
INFO 2026-06-08 08:30:52 MarkDuplicates Tracking 226186 as yet unmatched pairs. 15615 records in RAM.
INFO 2026-06-08 08:30:53 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr15:45,113,058
INFO 2026-06-08 08:30:53 MarkDuplicates Tracking 224470 as yet unmatched pairs. 13899 records in RAM.
INFO 2026-06-08 08:30:57 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 3s. Last read position: chr15:50,575,044
INFO 2026-06-08 08:30:57 MarkDuplicates Tracking 222981 as yet unmatched pairs. 12407 records in RAM.
INFO 2026-06-08 08:30:58 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr15:58,611,845
INFO 2026-06-08 08:30:58 MarkDuplicates Tracking 221921 as yet unmatched pairs. 11345 records in RAM.
INFO 2026-06-08 08:31:00 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr15:63,632,727
INFO 2026-06-08 08:31:00 MarkDuplicates Tracking 220752 as yet unmatched pairs. 10174 records in RAM.
INFO 2026-06-08 08:31:01 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 1s. Last read position: chr15:66,487,273
INFO 2026-06-08 08:31:01 MarkDuplicates Tracking 219543 as yet unmatched pairs. 8963 records in RAM.
INFO 2026-06-08 08:31:03 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 1s. Last read position: chr15:72,207,163
INFO 2026-06-08 08:31:03 MarkDuplicates Tracking 218289 as yet unmatched pairs. 7705 records in RAM.
INFO 2026-06-08 08:31:04 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr15:74,035,895
INFO 2026-06-08 08:31:04 MarkDuplicates Tracking 217331 as yet unmatched pairs. 6745 records in RAM.
INFO 2026-06-08 08:31:06 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 1s. Last read position: chr15:76,795,289
INFO 2026-06-08 08:31:06 MarkDuplicates Tracking 215446 as yet unmatched pairs. 4855 records in RAM.
INFO 2026-06-08 08:31:07 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 1s. Last read position: chr15:82,372,498
INFO 2026-06-08 08:31:07 MarkDuplicates Tracking 214544 as yet unmatched pairs. 3949 records in RAM.
INFO 2026-06-08 08:31:09 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 1s. Last read position: chr15:88,467,761
INFO 2026-06-08 08:31:09 MarkDuplicates Tracking 213294 as yet unmatched pairs. 2698 records in RAM.
INFO 2026-06-08 08:31:10 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr15:90,904,298
INFO 2026-06-08 08:31:10 MarkDuplicates Tracking 211947 as yet unmatched pairs. 1350 records in RAM.
INFO 2026-06-08 08:31:12 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 1s. Last read position: chr16:16,313
INFO 2026-06-08 08:31:12 MarkDuplicates Tracking 210602 as yet unmatched pairs. 33128 records in RAM.
INFO 2026-06-08 08:31:13 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr16:1,241,848
INFO 2026-06-08 08:31:13 MarkDuplicates Tracking 209182 as yet unmatched pairs. 31705 records in RAM.
INFO 2026-06-08 08:31:15 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr16:2,099,973
INFO 2026-06-08 08:31:15 MarkDuplicates Tracking 207589 as yet unmatched pairs. 30112 records in RAM.
INFO 2026-06-08 08:31:16 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 1s. Last read position: chr16:2,765,264
INFO 2026-06-08 08:31:16 MarkDuplicates Tracking 206782 as yet unmatched pairs. 29304 records in RAM.
INFO 2026-06-08 08:31:18 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr16:3,727,930
INFO 2026-06-08 08:31:18 MarkDuplicates Tracking 205146 as yet unmatched pairs. 27667 records in RAM.
INFO 2026-06-08 08:31:20 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr16:8,859,201
INFO 2026-06-08 08:31:20 MarkDuplicates Tracking 203825 as yet unmatched pairs. 26346 records in RAM.
INFO 2026-06-08 08:31:22 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 2s. Last read position: chr16:11,927,747
INFO 2026-06-08 08:31:22 MarkDuplicates Tracking 202705 as yet unmatched pairs. 25221 records in RAM.
INFO 2026-06-08 08:31:24 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 1s. Last read position: chr16:14,975,106
INFO 2026-06-08 08:31:24 MarkDuplicates Tracking 201884 as yet unmatched pairs. 24400 records in RAM.
INFO 2026-06-08 08:31:25 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr16:15,759,614
INFO 2026-06-08 08:31:25 MarkDuplicates Tracking 201025 as yet unmatched pairs. 23541 records in RAM.
INFO 2026-06-08 08:31:26 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr16:16,369,417
INFO 2026-06-08 08:31:26 MarkDuplicates Tracking 200271 as yet unmatched pairs. 22787 records in RAM.
INFO 2026-06-08 08:31:28 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr16:18,519,511
INFO 2026-06-08 08:31:28 MarkDuplicates Tracking 199861 as yet unmatched pairs. 22375 records in RAM.
INFO 2026-06-08 08:31:29 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr16:21,403,285
INFO 2026-06-08 08:31:29 MarkDuplicates Tracking 198726 as yet unmatched pairs. 21240 records in RAM.
INFO 2026-06-08 08:31:30 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr16:21,843,693
INFO 2026-06-08 08:31:30 MarkDuplicates Tracking 198500 as yet unmatched pairs. 21014 records in RAM.
INFO 2026-06-08 08:31:32 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 1s. Last read position: chr16:22,536,170
INFO 2026-06-08 08:31:32 MarkDuplicates Tracking 197889 as yet unmatched pairs. 20403 records in RAM.
INFO 2026-06-08 08:31:33 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr16:28,107,588
INFO 2026-06-08 08:31:33 MarkDuplicates Tracking 196714 as yet unmatched pairs. 19227 records in RAM.
INFO 2026-06-08 08:31:34 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr16:29,076,670
INFO 2026-06-08 08:31:34 MarkDuplicates Tracking 195498 as yet unmatched pairs. 18010 records in RAM.
INFO 2026-06-08 08:31:36 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 1s. Last read position: chr16:29,806,865
INFO 2026-06-08 08:31:36 MarkDuplicates Tracking 195010 as yet unmatched pairs. 17522 records in RAM.
INFO 2026-06-08 08:31:38 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 1s. Last read position: chr16:30,193,544
INFO 2026-06-08 08:31:38 MarkDuplicates Tracking 193491 as yet unmatched pairs. 16002 records in RAM.
INFO 2026-06-08 08:31:39 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr16:30,707,673
INFO 2026-06-08 08:31:39 MarkDuplicates Tracking 192684 as yet unmatched pairs. 15195 records in RAM.
INFO 2026-06-08 08:31:41 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 1s. Last read position: chr16:31,185,119
INFO 2026-06-08 08:31:41 MarkDuplicates Tracking 191606 as yet unmatched pairs. 14112 records in RAM.
INFO 2026-06-08 08:31:43 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr16:48,562,107
INFO 2026-06-08 08:31:43 MarkDuplicates Tracking 190056 as yet unmatched pairs. 12562 records in RAM.
INFO 2026-06-08 08:31:44 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 1s. Last read position: chr16:55,509,192
INFO 2026-06-08 08:31:44 MarkDuplicates Tracking 188773 as yet unmatched pairs. 11276 records in RAM.
INFO 2026-06-08 08:31:46 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 1s. Last read position: chr16:57,651,603
INFO 2026-06-08 08:31:46 MarkDuplicates Tracking 187433 as yet unmatched pairs. 9936 records in RAM.
INFO 2026-06-08 08:31:47 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr16:67,230,479
INFO 2026-06-08 08:31:47 MarkDuplicates Tracking 186147 as yet unmatched pairs. 8649 records in RAM.
INFO 2026-06-08 08:31:49 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr16:68,878,167
INFO 2026-06-08 08:31:49 MarkDuplicates Tracking 184727 as yet unmatched pairs. 7229 records in RAM.
INFO 2026-06-08 08:31:51 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 2s. Last read position: chr16:70,681,002
INFO 2026-06-08 08:31:51 MarkDuplicates Tracking 183572 as yet unmatched pairs. 6074 records in RAM.
INFO 2026-06-08 08:31:53 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 2s. Last read position: chr16:75,568,105
INFO 2026-06-08 08:31:53 MarkDuplicates Tracking 182577 as yet unmatched pairs. 5077 records in RAM.
INFO 2026-06-08 08:31:55 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr16:84,877,436
INFO 2026-06-08 08:31:55 MarkDuplicates Tracking 181030 as yet unmatched pairs. 3526 records in RAM.
INFO 2026-06-08 08:31:56 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr16:88,655,268
INFO 2026-06-08 08:31:56 MarkDuplicates Tracking 179461 as yet unmatched pairs. 1952 records in RAM.
INFO 2026-06-08 08:31:58 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr16:89,710,922
INFO 2026-06-08 08:31:58 MarkDuplicates Tracking 178015 as yet unmatched pairs. 505 records in RAM.
INFO 2026-06-08 08:32:00 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 1s. Last read position: chr17:1,365,032
INFO 2026-06-08 08:32:00 MarkDuplicates Tracking 177603 as yet unmatched pairs. 48810 records in RAM.
INFO 2026-06-08 08:32:01 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr17:2,057,625
INFO 2026-06-08 08:32:01 MarkDuplicates Tracking 175514 as yet unmatched pairs. 46721 records in RAM.
INFO 2026-06-08 08:32:03 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr17:4,539,456
INFO 2026-06-08 08:32:03 MarkDuplicates Tracking 174150 as yet unmatched pairs. 45356 records in RAM.
INFO 2026-06-08 08:32:05 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 2s. Last read position: chr17:5,023,656
INFO 2026-06-08 08:32:05 MarkDuplicates Tracking 172692 as yet unmatched pairs. 43898 records in RAM.
INFO 2026-06-08 08:32:06 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 1s. Last read position: chr17:7,309,672
INFO 2026-06-08 08:32:06 MarkDuplicates Tracking 171643 as yet unmatched pairs. 42849 records in RAM.
INFO 2026-06-08 08:32:08 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr17:7,574,560
INFO 2026-06-08 08:32:08 MarkDuplicates Tracking 171102 as yet unmatched pairs. 42308 records in RAM.
INFO 2026-06-08 08:32:10 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr17:7,930,621
INFO 2026-06-08 08:32:10 MarkDuplicates Tracking 168965 as yet unmatched pairs. 40170 records in RAM.
INFO 2026-06-08 08:32:11 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr17:16,058,577
INFO 2026-06-08 08:32:11 MarkDuplicates Tracking 167659 as yet unmatched pairs. 38861 records in RAM.
INFO 2026-06-08 08:32:12 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 1s. Last read position: chr17:17,813,379
INFO 2026-06-08 08:32:12 MarkDuplicates Tracking 166324 as yet unmatched pairs. 37526 records in RAM.
INFO 2026-06-08 08:32:14 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr17:20,227,604
INFO 2026-06-08 08:32:14 MarkDuplicates Tracking 165012 as yet unmatched pairs. 36213 records in RAM.
INFO 2026-06-08 08:32:16 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr17:28,635,391
INFO 2026-06-08 08:32:16 MarkDuplicates Tracking 163829 as yet unmatched pairs. 35030 records in RAM.
INFO 2026-06-08 08:32:17 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr17:29,632,581
INFO 2026-06-08 08:32:17 MarkDuplicates Tracking 162473 as yet unmatched pairs. 33674 records in RAM.
INFO 2026-06-08 08:32:19 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr17:34,256,794
INFO 2026-06-08 08:32:19 MarkDuplicates Tracking 161761 as yet unmatched pairs. 32961 records in RAM.
INFO 2026-06-08 08:32:21 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 1s. Last read position: chr17:36,297,347
INFO 2026-06-08 08:32:21 MarkDuplicates Tracking 160064 as yet unmatched pairs. 31264 records in RAM.
INFO 2026-06-08 08:32:22 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chr17:38,467,264
INFO 2026-06-08 08:32:22 MarkDuplicates Tracking 159785 as yet unmatched pairs. 30985 records in RAM.
INFO 2026-06-08 08:32:24 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr17:39,653,657
INFO 2026-06-08 08:32:24 MarkDuplicates Tracking 157985 as yet unmatched pairs. 29185 records in RAM.
INFO 2026-06-08 08:32:25 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr17:40,094,963
INFO 2026-06-08 08:32:25 MarkDuplicates Tracking 156461 as yet unmatched pairs. 27660 records in RAM.
INFO 2026-06-08 08:32:27 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chr17:41,690,837
INFO 2026-06-08 08:32:27 MarkDuplicates Tracking 157307 as yet unmatched pairs. 28506 records in RAM.
INFO 2026-06-08 08:32:29 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr17:42,404,951
INFO 2026-06-08 08:32:29 MarkDuplicates Tracking 153700 as yet unmatched pairs. 24899 records in RAM.
INFO 2026-06-08 08:32:30 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 1s. Last read position: chr17:44,091,133
INFO 2026-06-08 08:32:30 MarkDuplicates Tracking 152386 as yet unmatched pairs. 23585 records in RAM.
INFO 2026-06-08 08:32:32 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 1s. Last read position: chr17:45,405,976
INFO 2026-06-08 08:32:32 MarkDuplicates Tracking 151194 as yet unmatched pairs. 22393 records in RAM.
INFO 2026-06-08 08:32:33 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr17:47,813,391
INFO 2026-06-08 08:32:33 MarkDuplicates Tracking 150060 as yet unmatched pairs. 21259 records in RAM.
INFO 2026-06-08 08:32:35 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,370
INFO 2026-06-08 08:32:35 MarkDuplicates Tracking 149410 as yet unmatched pairs. 20609 records in RAM.
INFO 2026-06-08 08:32:36 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 1s. Last read position: chr17:50,192,663
INFO 2026-06-08 08:32:36 MarkDuplicates Tracking 149158 as yet unmatched pairs. 20357 records in RAM.
INFO 2026-06-08 08:32:39 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 2s. Last read position: chr17:50,199,273
INFO 2026-06-08 08:32:39 MarkDuplicates Tracking 147134 as yet unmatched pairs. 18327 records in RAM.
INFO 2026-06-08 08:32:40 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr17:57,873,598
INFO 2026-06-08 08:32:40 MarkDuplicates Tracking 144538 as yet unmatched pairs. 15728 records in RAM.
INFO 2026-06-08 08:32:42 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: chr17:59,685,100
INFO 2026-06-08 08:32:42 MarkDuplicates Tracking 143719 as yet unmatched pairs. 14904 records in RAM.
INFO 2026-06-08 08:32:44 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 1s. Last read position: chr17:63,714,099
INFO 2026-06-08 08:32:44 MarkDuplicates Tracking 142053 as yet unmatched pairs. 13235 records in RAM.
INFO 2026-06-08 08:32:46 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 1s. Last read position: chr17:65,549,567
INFO 2026-06-08 08:32:46 MarkDuplicates Tracking 140881 as yet unmatched pairs. 12063 records in RAM.
INFO 2026-06-08 08:32:47 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 1s. Last read position: chr17:68,983,766
INFO 2026-06-08 08:32:47 MarkDuplicates Tracking 139705 as yet unmatched pairs. 10885 records in RAM.
INFO 2026-06-08 08:32:49 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 1s. Last read position: chr17:75,563,088
INFO 2026-06-08 08:32:49 MarkDuplicates Tracking 138398 as yet unmatched pairs. 9578 records in RAM.
INFO 2026-06-08 08:32:50 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr17:76,008,940
INFO 2026-06-08 08:32:50 MarkDuplicates Tracking 136928 as yet unmatched pairs. 8108 records in RAM.
INFO 2026-06-08 08:32:51 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 1s. Last read position: chr17:78,103,421
INFO 2026-06-08 08:32:51 MarkDuplicates Tracking 135445 as yet unmatched pairs. 6625 records in RAM.
INFO 2026-06-08 08:32:53 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 1s. Last read position: chr17:80,140,129
INFO 2026-06-08 08:32:53 MarkDuplicates Tracking 134200 as yet unmatched pairs. 5380 records in RAM.
INFO 2026-06-08 08:32:54 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 1s. Last read position: chr17:80,363,258
INFO 2026-06-08 08:32:54 MarkDuplicates Tracking 132959 as yet unmatched pairs. 4139 records in RAM.
INFO 2026-06-08 08:32:56 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr17:81,681,862
INFO 2026-06-08 08:32:56 MarkDuplicates Tracking 131420 as yet unmatched pairs. 2600 records in RAM.
INFO 2026-06-08 08:32:57 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 1s. Last read position: chr17:82,088,124
INFO 2026-06-08 08:32:57 MarkDuplicates Tracking 129894 as yet unmatched pairs. 1074 records in RAM.
INFO 2026-06-08 08:32:59 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 1s. Last read position: chr18:2,784,501
INFO 2026-06-08 08:32:59 MarkDuplicates Tracking 128602 as yet unmatched pairs. 6953 records in RAM.
INFO 2026-06-08 08:33:00 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr18:9,954,095
INFO 2026-06-08 08:33:00 MarkDuplicates Tracking 127595 as yet unmatched pairs. 5945 records in RAM.
INFO 2026-06-08 08:33:02 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 1s. Last read position: chr18:26,032,415
INFO 2026-06-08 08:33:02 MarkDuplicates Tracking 126295 as yet unmatched pairs. 4643 records in RAM.
INFO 2026-06-08 08:33:04 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 2s. Last read position: chr18:46,091,742
INFO 2026-06-08 08:33:04 MarkDuplicates Tracking 125482 as yet unmatched pairs. 3829 records in RAM.
INFO 2026-06-08 08:33:06 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 1s. Last read position: chr18:57,655,224
INFO 2026-06-08 08:33:06 MarkDuplicates Tracking 123866 as yet unmatched pairs. 2208 records in RAM.
INFO 2026-06-08 08:33:07 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr18:74,510,959
INFO 2026-06-08 08:33:07 MarkDuplicates Tracking 122569 as yet unmatched pairs. 909 records in RAM.
INFO 2026-06-08 08:33:09 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr19:810,563
INFO 2026-06-08 08:33:09 MarkDuplicates Tracking 121644 as yet unmatched pairs. 51014 records in RAM.
INFO 2026-06-08 08:33:10 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr19:1,116,036
INFO 2026-06-08 08:33:10 MarkDuplicates Tracking 119604 as yet unmatched pairs. 48972 records in RAM.
INFO 2026-06-08 08:33:12 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr19:1,816,077
INFO 2026-06-08 08:33:12 MarkDuplicates Tracking 117723 as yet unmatched pairs. 47091 records in RAM.
INFO 2026-06-08 08:33:14 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr19:2,997,744
INFO 2026-06-08 08:33:14 MarkDuplicates Tracking 116095 as yet unmatched pairs. 45463 records in RAM.
INFO 2026-06-08 08:33:15 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr19:4,447,477
INFO 2026-06-08 08:33:15 MarkDuplicates Tracking 114567 as yet unmatched pairs. 43935 records in RAM.
INFO 2026-06-08 08:33:17 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 1s. Last read position: chr19:5,691,333
INFO 2026-06-08 08:33:17 MarkDuplicates Tracking 113183 as yet unmatched pairs. 42548 records in RAM.
INFO 2026-06-08 08:33:19 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 2s. Last read position: chr19:6,712,528
INFO 2026-06-08 08:33:19 MarkDuplicates Tracking 111916 as yet unmatched pairs. 41281 records in RAM.
INFO 2026-06-08 08:33:21 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 1s. Last read position: chr19:7,879,799
INFO 2026-06-08 08:33:21 MarkDuplicates Tracking 110381 as yet unmatched pairs. 39746 records in RAM.
INFO 2026-06-08 08:33:23 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr19:8,966,991
INFO 2026-06-08 08:33:23 MarkDuplicates Tracking 109284 as yet unmatched pairs. 38649 records in RAM.
INFO 2026-06-08 08:33:24 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 1s. Last read position: chr19:10,395,981
INFO 2026-06-08 08:33:24 MarkDuplicates Tracking 108042 as yet unmatched pairs. 37407 records in RAM.
INFO 2026-06-08 08:33:26 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr19:11,214,581
INFO 2026-06-08 08:33:26 MarkDuplicates Tracking 106621 as yet unmatched pairs. 35986 records in RAM.
INFO 2026-06-08 08:33:27 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 1s. Last read position: chr19:12,791,779
INFO 2026-06-08 08:33:27 MarkDuplicates Tracking 105396 as yet unmatched pairs. 34760 records in RAM.
INFO 2026-06-08 08:33:29 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr19:14,097,601
INFO 2026-06-08 08:33:29 MarkDuplicates Tracking 104401 as yet unmatched pairs. 33765 records in RAM.
INFO 2026-06-08 08:33:30 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 1s. Last read position: chr19:15,238,828
INFO 2026-06-08 08:33:30 MarkDuplicates Tracking 102538 as yet unmatched pairs. 31901 records in RAM.
INFO 2026-06-08 08:33:32 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 1s. Last read position: chr19:16,111,967
INFO 2026-06-08 08:33:32 MarkDuplicates Tracking 101113 as yet unmatched pairs. 30476 records in RAM.
INFO 2026-06-08 08:33:33 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr19:17,578,033
INFO 2026-06-08 08:33:33 MarkDuplicates Tracking 99570 as yet unmatched pairs. 28933 records in RAM.
INFO 2026-06-08 08:33:35 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 1s. Last read position: chr19:18,431,817
INFO 2026-06-08 08:33:35 MarkDuplicates Tracking 98291 as yet unmatched pairs. 27647 records in RAM.
INFO 2026-06-08 08:33:37 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr19:19,528,079
INFO 2026-06-08 08:33:37 MarkDuplicates Tracking 96623 as yet unmatched pairs. 25978 records in RAM.
INFO 2026-06-08 08:33:39 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr19:34,399,565
INFO 2026-06-08 08:33:39 MarkDuplicates Tracking 95547 as yet unmatched pairs. 24902 records in RAM.
INFO 2026-06-08 08:33:40 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 1s. Last read position: chr19:35,738,282
INFO 2026-06-08 08:33:40 MarkDuplicates Tracking 93752 as yet unmatched pairs. 23106 records in RAM.
INFO 2026-06-08 08:33:42 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr19:38,632,429
INFO 2026-06-08 08:33:42 MarkDuplicates Tracking 92417 as yet unmatched pairs. 21770 records in RAM.
INFO 2026-06-08 08:33:43 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 1s. Last read position: chr19:39,433,519
INFO 2026-06-08 08:33:43 MarkDuplicates Tracking 91754 as yet unmatched pairs. 21107 records in RAM.
INFO 2026-06-08 08:33:45 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 1s. Last read position: chr19:39,895,933
INFO 2026-06-08 08:33:45 MarkDuplicates Tracking 90255 as yet unmatched pairs. 19608 records in RAM.
INFO 2026-06-08 08:33:46 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 1s. Last read position: chr19:40,605,774
INFO 2026-06-08 08:33:46 MarkDuplicates Tracking 88714 as yet unmatched pairs. 18067 records in RAM.
INFO 2026-06-08 08:33:48 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chr19:41,708,755
INFO 2026-06-08 08:33:48 MarkDuplicates Tracking 87047 as yet unmatched pairs. 16400 records in RAM.
INFO 2026-06-08 08:33:49 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chr19:42,287,160
INFO 2026-06-08 08:33:49 MarkDuplicates Tracking 86079 as yet unmatched pairs. 15432 records in RAM.
INFO 2026-06-08 08:33:51 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr19:44,748,817
INFO 2026-06-08 08:33:51 MarkDuplicates Tracking 84786 as yet unmatched pairs. 14125 records in RAM.
INFO 2026-06-08 08:33:53 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 1s. Last read position: chr19:45,524,632
INFO 2026-06-08 08:33:53 MarkDuplicates Tracking 83349 as yet unmatched pairs. 12687 records in RAM.
INFO 2026-06-08 08:33:54 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 1s. Last read position: chr19:47,072,019
INFO 2026-06-08 08:33:54 MarkDuplicates Tracking 81316 as yet unmatched pairs. 10653 records in RAM.
INFO 2026-06-08 08:33:56 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 1s. Last read position: chr19:48,800,188
INFO 2026-06-08 08:33:56 MarkDuplicates Tracking 79857 as yet unmatched pairs. 9191 records in RAM.
INFO 2026-06-08 08:33:57 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:13:37s. Time for last 1,000,000: 1s. Last read position: chr19:49,497,580
INFO 2026-06-08 08:33:57 MarkDuplicates Tracking 78862 as yet unmatched pairs. 8196 records in RAM.
INFO 2026-06-08 08:33:59 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 1s. Last read position: chr19:49,890,454
INFO 2026-06-08 08:33:59 MarkDuplicates Tracking 77047 as yet unmatched pairs. 6381 records in RAM.
INFO 2026-06-08 08:34:01 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 1s. Last read position: chr19:52,225,738
INFO 2026-06-08 08:34:01 MarkDuplicates Tracking 75726 as yet unmatched pairs. 5059 records in RAM.
INFO 2026-06-08 08:34:02 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 1s. Last read position: chr19:54,276,861
INFO 2026-06-08 08:34:02 MarkDuplicates Tracking 74794 as yet unmatched pairs. 4126 records in RAM.
INFO 2026-06-08 08:34:03 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr19:55,245,557
INFO 2026-06-08 08:34:03 MarkDuplicates Tracking 73434 as yet unmatched pairs. 2766 records in RAM.
INFO 2026-06-08 08:34:05 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 1s. Last read position: chr19:57,747,005
INFO 2026-06-08 08:34:05 MarkDuplicates Tracking 71782 as yet unmatched pairs. 1113 records in RAM.
INFO 2026-06-08 08:34:06 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 1s. Last read position: chr20:489,816
INFO 2026-06-08 08:34:06 MarkDuplicates Tracking 70704 as yet unmatched pairs. 16512 records in RAM.
INFO 2026-06-08 08:34:08 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 1s. Last read position: chr20:3,784,637
INFO 2026-06-08 08:34:08 MarkDuplicates Tracking 69171 as yet unmatched pairs. 14979 records in RAM.
INFO 2026-06-08 08:34:11 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 2s. Last read position: chr20:17,614,736
INFO 2026-06-08 08:34:11 MarkDuplicates Tracking 67793 as yet unmatched pairs. 13601 records in RAM.
INFO 2026-06-08 08:34:12 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 1s. Last read position: chr20:23,633,847
INFO 2026-06-08 08:34:12 MarkDuplicates Tracking 67002 as yet unmatched pairs. 12810 records in RAM.
INFO 2026-06-08 08:34:14 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 1s. Last read position: chr20:33,848,525
INFO 2026-06-08 08:34:14 MarkDuplicates Tracking 65249 as yet unmatched pairs. 11054 records in RAM.
INFO 2026-06-08 08:34:15 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 1s. Last read position: chr20:35,858,309
INFO 2026-06-08 08:34:15 MarkDuplicates Tracking 64019 as yet unmatched pairs. 9824 records in RAM.
INFO 2026-06-08 08:34:17 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 1s. Last read position: chr20:38,541,060
INFO 2026-06-08 08:34:17 MarkDuplicates Tracking 62565 as yet unmatched pairs. 8370 records in RAM.
INFO 2026-06-08 08:34:18 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 1s. Last read position: chr20:45,363,668
INFO 2026-06-08 08:34:18 MarkDuplicates Tracking 61474 as yet unmatched pairs. 7279 records in RAM.
INFO 2026-06-08 08:34:19 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 1s. Last read position: chr20:48,720,476
INFO 2026-06-08 08:34:19 MarkDuplicates Tracking 59961 as yet unmatched pairs. 5766 records in RAM.
INFO 2026-06-08 08:34:21 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr20:51,690,783
INFO 2026-06-08 08:34:21 MarkDuplicates Tracking 58658 as yet unmatched pairs. 4463 records in RAM.
INFO 2026-06-08 08:34:22 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 1s. Last read position: chr20:59,994,330
INFO 2026-06-08 08:34:22 MarkDuplicates Tracking 57191 as yet unmatched pairs. 2991 records in RAM.
INFO 2026-06-08 08:34:24 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 1s. Last read position: chr20:62,909,819
INFO 2026-06-08 08:34:24 MarkDuplicates Tracking 55880 as yet unmatched pairs. 1680 records in RAM.
INFO 2026-06-08 08:34:26 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 1s. Last read position: chr21:5,022,238
INFO 2026-06-08 08:34:26 MarkDuplicates Tracking 54200 as yet unmatched pairs. 11526 records in RAM.
INFO 2026-06-08 08:34:27 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 1s. Last read position: chr21:8,216,921
INFO 2026-06-08 08:34:27 MarkDuplicates Tracking 52797 as yet unmatched pairs. 10095 records in RAM.
INFO 2026-06-08 08:34:29 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr21:8,260,313
INFO 2026-06-08 08:34:29 MarkDuplicates Tracking 52305 as yet unmatched pairs. 9603 records in RAM.
INFO 2026-06-08 08:34:30 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 1s. Last read position: chr21:8,411,289
INFO 2026-06-08 08:34:30 MarkDuplicates Tracking 51589 as yet unmatched pairs. 8882 records in RAM.
INFO 2026-06-08 08:34:31 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 1s. Last read position: chr21:8,444,592
INFO 2026-06-08 08:34:31 MarkDuplicates Tracking 50828 as yet unmatched pairs. 8119 records in RAM.
INFO 2026-06-08 08:34:33 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 1s. Last read position: chr21:29,048,761
INFO 2026-06-08 08:34:33 MarkDuplicates Tracking 49708 as yet unmatched pairs. 6999 records in RAM.
INFO 2026-06-08 08:34:34 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: chr21:33,554,021
INFO 2026-06-08 08:34:34 MarkDuplicates Tracking 48833 as yet unmatched pairs. 6124 records in RAM.
INFO 2026-06-08 08:34:36 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 1s. Last read position: chr21:38,818,550
INFO 2026-06-08 08:34:36 MarkDuplicates Tracking 47263 as yet unmatched pairs. 4553 records in RAM.
INFO 2026-06-08 08:34:37 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 1s. Last read position: chr21:43,659,647
INFO 2026-06-08 08:34:37 MarkDuplicates Tracking 45760 as yet unmatched pairs. 3050 records in RAM.
INFO 2026-06-08 08:34:39 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 1s. Last read position: chr21:45,494,897
INFO 2026-06-08 08:34:39 MarkDuplicates Tracking 44644 as yet unmatched pairs. 1928 records in RAM.
INFO 2026-06-08 08:34:41 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 1s. Last read position: chr21:46,346,753
INFO 2026-06-08 08:34:41 MarkDuplicates Tracking 43069 as yet unmatched pairs. 353 records in RAM.
INFO 2026-06-08 08:34:42 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 1s. Last read position: chr22:20,140,886
INFO 2026-06-08 08:34:42 MarkDuplicates Tracking 41618 as yet unmatched pairs. 17421 records in RAM.
INFO 2026-06-08 08:34:44 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr22:23,290,374
INFO 2026-06-08 08:34:44 MarkDuplicates Tracking 40510 as yet unmatched pairs. 16312 records in RAM.
INFO 2026-06-08 08:34:46 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 1s. Last read position: chr22:28,795,636
INFO 2026-06-08 08:34:46 MarkDuplicates Tracking 39550 as yet unmatched pairs. 15351 records in RAM.
INFO 2026-06-08 08:36:52 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:16:31s. Time for last 1,000,000: 126s. Last read position: chr22:29,570,456
INFO 2026-06-08 08:36:52 MarkDuplicates Tracking 37611 as yet unmatched pairs. 13412 records in RAM.
INFO 2026-06-08 08:36:54 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:16:33s. Time for last 1,000,000: 2s. Last read position: chr22:32,399,648
INFO 2026-06-08 08:36:54 MarkDuplicates Tracking 36374 as yet unmatched pairs. 12175 records in RAM.
INFO 2026-06-08 08:36:56 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:16:35s. Time for last 1,000,000: 1s. Last read position: chr22:36,292,217
INFO 2026-06-08 08:36:56 MarkDuplicates Tracking 35186 as yet unmatched pairs. 10987 records in RAM.
INFO 2026-06-08 08:36:57 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:16:37s. Time for last 1,000,000: 1s. Last read position: chr22:37,568,315
INFO 2026-06-08 08:36:57 MarkDuplicates Tracking 33703 as yet unmatched pairs. 9504 records in RAM.
INFO 2026-06-08 08:36:59 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:16:38s. Time for last 1,000,000: 1s. Last read position: chr22:38,506,127
INFO 2026-06-08 08:36:59 MarkDuplicates Tracking 32404 as yet unmatched pairs. 8205 records in RAM.
INFO 2026-06-08 08:37:00 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:16:39s. Time for last 1,000,000: 1s. Last read position: chr22:40,418,821
INFO 2026-06-08 08:37:00 MarkDuplicates Tracking 30888 as yet unmatched pairs. 6689 records in RAM.
INFO 2026-06-08 08:37:02 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:16:41s. Time for last 1,000,000: 1s. Last read position: chr22:42,068,482
INFO 2026-06-08 08:37:02 MarkDuplicates Tracking 29727 as yet unmatched pairs. 5527 records in RAM.
INFO 2026-06-08 08:37:03 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:16:42s. Time for last 1,000,000: 1s. Last read position: chr22:45,541,361
INFO 2026-06-08 08:37:03 MarkDuplicates Tracking 28672 as yet unmatched pairs. 4472 records in RAM.
INFO 2026-06-08 08:37:05 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:16:44s. Time for last 1,000,000: 1s. Last read position: chr22:50,250,442
INFO 2026-06-08 08:37:05 MarkDuplicates Tracking 26649 as yet unmatched pairs. 2449 records in RAM.
INFO 2026-06-08 08:37:06 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:16:45s. Time for last 1,000,000: 1s. Last read position: chr22:50,530,460
INFO 2026-06-08 08:37:06 MarkDuplicates Tracking 25097 as yet unmatched pairs. 897 records in RAM.
INFO 2026-06-08 08:37:08 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:16:47s. Time for last 1,000,000: 1s. Last read position: chrX:3,324,418
INFO 2026-06-08 08:37:08 MarkDuplicates Tracking 23413 as yet unmatched pairs. 16069 records in RAM.
INFO 2026-06-08 08:37:09 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:16:49s. Time for last 1,000,000: 1s. Last read position: chrX:20,138,567
INFO 2026-06-08 08:37:09 MarkDuplicates Tracking 22114 as yet unmatched pairs. 14754 records in RAM.
INFO 2026-06-08 08:37:11 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:16:50s. Time for last 1,000,000: 1s. Last read position: chrX:40,600,818
INFO 2026-06-08 08:37:11 MarkDuplicates Tracking 21145 as yet unmatched pairs. 13785 records in RAM.
INFO 2026-06-08 08:37:12 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:16:52s. Time for last 1,000,000: 1s. Last read position: chrX:47,247,184
INFO 2026-06-08 08:37:12 MarkDuplicates Tracking 19798 as yet unmatched pairs. 12436 records in RAM.
INFO 2026-06-08 08:37:14 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:16:53s. Time for last 1,000,000: 1s. Last read position: chrX:49,071,889
INFO 2026-06-08 08:37:14 MarkDuplicates Tracking 18274 as yet unmatched pairs. 10912 records in RAM.
INFO 2026-06-08 08:37:15 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:16:54s. Time for last 1,000,000: 1s. Last read position: chrX:53,583,821
INFO 2026-06-08 08:37:15 MarkDuplicates Tracking 17143 as yet unmatched pairs. 9781 records in RAM.
INFO 2026-06-08 08:37:17 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:16:56s. Time for last 1,000,000: 2s. Last read position: chrX:69,162,858
INFO 2026-06-08 08:37:17 MarkDuplicates Tracking 15872 as yet unmatched pairs. 8509 records in RAM.
INFO 2026-06-08 08:37:20 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:16:59s. Time for last 1,000,000: 2s. Last read position: chrX:74,521,122
INFO 2026-06-08 08:37:20 MarkDuplicates Tracking 14628 as yet unmatched pairs. 7265 records in RAM.
INFO 2026-06-08 08:37:22 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:17:01s. Time for last 1,000,000: 1s. Last read position: chrX:101,391,551
INFO 2026-06-08 08:37:22 MarkDuplicates Tracking 14221 as yet unmatched pairs. 6858 records in RAM.
INFO 2026-06-08 08:37:23 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:17:02s. Time for last 1,000,000: 1s. Last read position: chrX:116,445,455
INFO 2026-06-08 08:37:23 MarkDuplicates Tracking 12428 as yet unmatched pairs. 5065 records in RAM.
INFO 2026-06-08 08:37:26 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:17:05s. Time for last 1,000,000: 2s. Last read position: chrX:133,985,388
INFO 2026-06-08 08:37:26 MarkDuplicates Tracking 11301 as yet unmatched pairs. 3938 records in RAM.
INFO 2026-06-08 08:37:28 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:17:07s. Time for last 1,000,000: 2s. Last read position: chrX:153,798,127
INFO 2026-06-08 08:37:28 MarkDuplicates Tracking 10297 as yet unmatched pairs. 2934 records in RAM.
INFO 2026-06-08 08:37:29 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:17:09s. Time for last 1,000,000: 1s. Last read position: chrX:154,361,356
INFO 2026-06-08 08:37:29 MarkDuplicates Tracking 9261 as yet unmatched pairs. 1898 records in RAM.
INFO 2026-06-08 08:37:31 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:17:10s. Time for last 1,000,000: 1s. Last read position: chrX:154,957,059
INFO 2026-06-08 08:37:31 MarkDuplicates Tracking 7473 as yet unmatched pairs. 110 records in RAM.
INFO 2026-06-08 08:37:33 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:17:12s. Time for last 1,000,000: 2s. Last read position: GL000220.1:111,362
INFO 2026-06-08 08:37:33 MarkDuplicates Tracking 6589 as yet unmatched pairs. 2957 records in RAM.
INFO 2026-06-08 08:37:35 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:17:14s. Time for last 1,000,000: 1s. Last read position: GL000220.1:150,438
INFO 2026-06-08 08:37:35 MarkDuplicates Tracking 3811 as yet unmatched pairs. 179 records in RAM.
INFO 2026-06-08 08:37:36 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:17:15s. Time for last 1,000,000: 1s. Last read position: GL000220.1:160,841
INFO 2026-06-08 08:37:36 MarkDuplicates Tracking 3632 as yet unmatched pairs. 0 records in RAM.
INFO 2026-06-08 08:37:37 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:17:16s. Time for last 1,000,000: 1s. Last read position: KI270733.1:133,613
INFO 2026-06-08 08:37:37 MarkDuplicates Tracking 853 as yet unmatched pairs. 835 records in RAM.
INFO 2026-06-08 08:37:38 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:17:17s. Time for last 1,000,000: 0s. Last read position: KI270733.1:178,250
INFO 2026-06-08 08:37:38 MarkDuplicates Tracking 32 as yet unmatched pairs. 14 records in RAM.
INFO 2026-06-08 08:37:39 MarkDuplicates Read 531385577 records. 0 pairs never matched.
INFO 2026-06-08 08:37:47 MarkDuplicates After buildSortedReadEndLists freeMemory: 204140568; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:37:47 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 08:37:52 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 08:37:52 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:38:13 OpticalDuplicateFinder Large duplicate set. size = 1146
INFO 2026-06-08 08:38:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,406
INFO 2026-06-08 08:38:13 OpticalDuplicateFinder Large duplicate set. size = 1045
INFO 2026-06-08 08:38:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,331
INFO 2026-06-08 08:38:13 OpticalDuplicateFinder Large duplicate set. size = 1232
INFO 2026-06-08 08:38:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,243
INFO 2026-06-08 08:38:13 OpticalDuplicateFinder Large duplicate set. size = 2113
INFO 2026-06-08 08:38:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,771
INFO 2026-06-08 08:38:13 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,582
INFO 2026-06-08 08:38:13 OpticalDuplicateFinder Large duplicate set. size = 1259
INFO 2026-06-08 08:38:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,774
INFO 2026-06-08 08:38:13 OpticalDuplicateFinder Large duplicate set. size = 2386
INFO 2026-06-08 08:38:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,852
INFO 2026-06-08 08:38:13 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,448
INFO 2026-06-08 08:38:13 OpticalDuplicateFinder Large duplicate set. size = 2416
INFO 2026-06-08 08:38:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,898
INFO 2026-06-08 08:38:13 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,672
INFO 2026-06-08 08:38:13 OpticalDuplicateFinder Large duplicate set. size = 4159
INFO 2026-06-08 08:38:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,045
INFO 2026-06-08 08:38:13 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,571
INFO 2026-06-08 08:38:13 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,388
INFO 2026-06-08 08:38:13 OpticalDuplicateFinder compared 4,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,897
INFO 2026-06-08 08:38:13 OpticalDuplicateFinder Large duplicate set. size = 1349
INFO 2026-06-08 08:38:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,560
INFO 2026-06-08 08:38:13 OpticalDuplicateFinder Large duplicate set. size = 1488
INFO 2026-06-08 08:38:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,834
INFO 2026-06-08 08:38:13 OpticalDuplicateFinder Large duplicate set. size = 1719
INFO 2026-06-08 08:38:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,352
INFO 2026-06-08 08:38:13 OpticalDuplicateFinder Large duplicate set. size = 1710
INFO 2026-06-08 08:38:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,489
INFO 2026-06-08 08:38:13 OpticalDuplicateFinder Large duplicate set. size = 1946
INFO 2026-06-08 08:38:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,980
INFO 2026-06-08 08:38:13 OpticalDuplicateFinder Large duplicate set. size = 1356
INFO 2026-06-08 08:38:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,656
INFO 2026-06-08 08:38:19 OpticalDuplicateFinder Large duplicate set. size = 1822
INFO 2026-06-08 08:38:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,385
INFO 2026-06-08 08:39:11 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 08:39:11 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:40:07 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 08:40:09 MarkDuplicates After generateDuplicateIndexes freeMemory: 203978728; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:40:09 MarkDuplicates Marking 292662581 records as duplicates.
INFO 2026-06-08 08:40:09 MarkDuplicates Found 10643487 optical duplicate clusters.
INFO 2026-06-08 08:40:09 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 08:40:24 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:15s. Time for last 10,000,000: 15s. Last read position: chr1:25,901,578
INFO 2026-06-08 08:40:39 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:30s. Time for last 10,000,000: 15s. Last read position: chr1:58,576,672
INFO 2026-06-08 08:40:54 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:45s. Time for last 10,000,000: 15s. Last read position: chr1:148,589,295
INFO 2026-06-08 08:41:09 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:00s. Time for last 10,000,000: 14s. Last read position: chr1:161,518,076
INFO 2026-06-08 08:41:24 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:15s. Time for last 10,000,000: 14s. Last read position: chr1:226,377,190
INFO 2026-06-08 08:41:39 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:30s. Time for last 10,000,000: 14s. Last read position: chr2:36,916,124
INFO 2026-06-08 08:41:54 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:45s. Time for last 10,000,000: 15s. Last read position: chr2:106,424,790
INFO 2026-06-08 08:42:09 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:00s. Time for last 10,000,000: 14s. Last read position: chr2:202,302,969
INFO 2026-06-08 08:42:24 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:15s. Time for last 10,000,000: 14s. Last read position: chr3:11,829,820
INFO 2026-06-08 08:42:39 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:30s. Time for last 10,000,000: 14s. Last read position: chr3:53,881,981
INFO 2026-06-08 08:42:54 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:02:45s. Time for last 10,000,000: 14s. Last read position: chr3:172,247,591
INFO 2026-06-08 08:43:08 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:02:59s. Time for last 10,000,000: 14s. Last read position: chr4:40,243,729
INFO 2026-06-08 08:43:23 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:14s. Time for last 10,000,000: 14s. Last read position: chr4:168,406,675
INFO 2026-06-08 08:43:39 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:30s. Time for last 10,000,000: 15s. Last read position: chr5:109,713,604
INFO 2026-06-08 08:43:54 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:03:44s. Time for last 10,000,000: 14s. Last read position: chr5:150,649,643
INFO 2026-06-08 08:44:09 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:03:59s. Time for last 10,000,000: 14s. Last read position: chr6:29,723,529
INFO 2026-06-08 08:44:23 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:14s. Time for last 10,000,000: 14s. Last read position: chr6:37,005,804
INFO 2026-06-08 08:44:39 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:04:29s. Time for last 10,000,000: 15s. Last read position: chr6:146,062,065
INFO 2026-06-08 08:44:54 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:04:44s. Time for last 10,000,000: 15s. Last read position: chr7:39,505,463
INFO 2026-06-08 08:45:08 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:04:59s. Time for last 10,000,000: 14s. Last read position: chr7:100,813,672
INFO 2026-06-08 08:45:24 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:15s. Time for last 10,000,000: 15s. Last read position: chr7:157,181,629
INFO 2026-06-08 08:45:39 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:05:30s. Time for last 10,000,000: 14s. Last read position: chr8:98,715,296
INFO 2026-06-08 08:45:53 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:05:44s. Time for last 10,000,000: 14s. Last read position: chr9:9,442,159
INFO 2026-06-08 08:46:08 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:05:59s. Time for last 10,000,000: 15s. Last read position: chr9:121,341,144
INFO 2026-06-08 08:46:23 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:14s. Time for last 10,000,000: 15s. Last read position: chr10:7,576,963
INFO 2026-06-08 08:46:39 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:06:29s. Time for last 10,000,000: 15s. Last read position: chr10:92,974,115
INFO 2026-06-08 08:46:53 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:06:44s. Time for last 10,000,000: 14s. Last read position: chr11:4,518,655
INFO 2026-06-08 08:47:08 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:06:59s. Time for last 10,000,000: 15s. Last read position: chr11:62,596,477
INFO 2026-06-08 08:47:23 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:07:14s. Time for last 10,000,000: 14s. Last read position: chr11:82,689,773
INFO 2026-06-08 08:47:38 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:07:29s. Time for last 10,000,000: 15s. Last read position: chr12:6,856,245
INFO 2026-06-08 08:47:53 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:07:44s. Time for last 10,000,000: 14s. Last read position: chr12:53,455,354
INFO 2026-06-08 08:48:08 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:07:58s. Time for last 10,000,000: 14s. Last read position: chr12:105,107,804
INFO 2026-06-08 08:48:24 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:08:15s. Time for last 10,000,000: 16s. Last read position: chr13:46,728,861
INFO 2026-06-08 08:48:39 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:08:30s. Time for last 10,000,000: 14s. Last read position: chr14:55,639,193
INFO 2026-06-08 08:48:54 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:08:45s. Time for last 10,000,000: 14s. Last read position: chr14:105,707,384
INFO 2026-06-08 08:49:09 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:09:00s. Time for last 10,000,000: 15s. Last read position: chr15:63,632,727
INFO 2026-06-08 08:49:24 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:09:15s. Time for last 10,000,000: 14s. Last read position: chr16:2,099,973
INFO 2026-06-08 08:49:39 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:09:30s. Time for last 10,000,000: 15s. Last read position: chr16:21,843,693
INFO 2026-06-08 08:49:54 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:09:45s. Time for last 10,000,000: 14s. Last read position: chr16:57,651,603
INFO 2026-06-08 08:50:10 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:10:00s. Time for last 10,000,000: 15s. Last read position: chr17:4,539,456
INFO 2026-06-08 08:50:24 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:10:15s. Time for last 10,000,000: 14s. Last read position: chr17:34,256,794
INFO 2026-06-08 08:50:39 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:10:30s. Time for last 10,000,000: 14s. Last read position: chr17:50,186,370
INFO 2026-06-08 08:50:54 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:10:45s. Time for last 10,000,000: 15s. Last read position: chr17:78,103,421
INFO 2026-06-08 08:51:09 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:11:00s. Time for last 10,000,000: 14s. Last read position: chr18:74,510,959
INFO 2026-06-08 08:51:24 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:11:15s. Time for last 10,000,000: 15s. Last read position: chr19:10,395,981
INFO 2026-06-08 08:51:39 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:11:30s. Time for last 10,000,000: 15s. Last read position: chr19:35,738,282
INFO 2026-06-08 08:51:54 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:11:45s. Time for last 10,000,000: 15s. Last read position: chr19:48,800,188
INFO 2026-06-08 08:52:10 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:12:00s. Time for last 10,000,000: 15s. Last read position: chr20:23,633,847
INFO 2026-06-08 08:52:25 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:12:16s. Time for last 10,000,000: 15s. Last read position: chr21:8,216,921
INFO 2026-06-08 08:52:39 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:12:30s. Time for last 10,000,000: 14s. Last read position: chr22:20,140,886
INFO 2026-06-08 08:52:54 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:12:45s. Time for last 10,000,000: 14s. Last read position: chr22:45,541,361
INFO 2026-06-08 08:53:09 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:13:00s. Time for last 10,000,000: 14s. Last read position: chrX:74,521,122
INFO 2026-06-08 08:53:23 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:13:14s. Time for last 10,000,000: 14s. Last read position: KI270733.1:133,613
INFO 2026-06-08 08:53:31 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 08:53:31 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 08:53:31 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 08:53:31 MarkDuplicates Before output close freeMemory: 203953128; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:53:32 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 08:53:32 MarkDuplicates After output close freeMemory: 104189528; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 08:53:32 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 33.21 minutes.
Runtime.totalMemory()=134217728
ls: *cram: No such file or directory
ls: *.crai: No such file or directory