File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/7cdc3220492099f814dc4cd8c39a4d/.command.log
Size
5.8 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-bbc28d-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/e4ab7de40988134fc4bc02116c460f/aih-tih-sc-bbc28d-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/7cdc3220492099f814dc4cd8c39a4d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/7cdc3220492099f814dc4cd8c39a4d/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/75/e8e585c61dd3dfb85b3bb5d271b65d/aih-tih-sc-bbc28d-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
BCR--FBN2
starfusion
arriba
AC025884.2--IGH-@-ext
starfusion
REST--TENM3
starfusion
arriba
SYMPK--PTH2
starfusion
arriba
AKAP12--ESR1
starfusion
arriba
PITPNA--PRPF8
starfusion
arriba
MAP2--POFUT1
starfusion
arriba
GGT5--BCOR
starfusion
arriba
NF2--ZNF804B
starfusion
arriba
BCL3--ETHE1
starfusion
arriba
AC024901.1--COL4A5
starfusion
arriba
FBN2--AL356022.1
arriba
FBN2--LINC02302
arriba
TVP23C--CDRT4
arriba
ERBB4--ERBB4
arriba
ERBB4--AC093865.1
arriba
PCDHA10--PCDHAC1
arriba
PCDHA10--PCDHAC2
arriba
PCDHA10--PCDHA13
arriba
PAICS--RPS4XP18
arriba
PAICS--RNU6-1032P
arriba
SPIDR--EFCAB1
arriba
SPIDR--AC100805.1
arriba
GTF2IRD1--GTF2I
arriba

  0%|          | 0/24 [00:00<?, ?it/s]
Processing BCR--FBN2:   0%|          | 0/24 [00:00<?, ?it/s]
Processing BCR--FBN2:   4%|▍         | 1/24 [00:00<00:02,  9.24it/s]
Processing AC025884.2--IGH-@-ext:   4%|▍         | 1/24 [00:00<00:02,  9.24it/s]
Processing AC025884.2--IGH-@-ext:   8%|▊         | 2/24 [00:00<00:02,  9.47it/s]
Processing REST--TENM3:   8%|▊         | 2/24 [00:00<00:02,  9.47it/s]          
Processing REST--TENM3:  12%|█▎        | 3/24 [00:00<00:02,  9.53it/s]
Processing SYMPK--PTH2:  12%|█▎        | 3/24 [00:00<00:02,  9.53it/s]
Processing SYMPK--PTH2:  17%|█▋        | 4/24 [00:00<00:02,  9.56it/s]
Processing AKAP12--ESR1:  17%|█▋        | 4/24 [00:00<00:02,  9.56it/s]
Processing AKAP12--ESR1:  21%|██        | 5/24 [00:00<00:01,  9.59it/s]
Processing PITPNA--PRPF8:  21%|██        | 5/24 [00:00<00:01,  9.59it/s]
Processing PITPNA--PRPF8:  25%|██▌       | 6/24 [00:00<00:01,  9.61it/s]
Processing MAP2--POFUT1:  25%|██▌       | 6/24 [00:00<00:01,  9.61it/s] 
Processing MAP2--POFUT1:  29%|██▉       | 7/24 [00:00<00:01,  9.62it/s]
Processing GGT5--BCOR:  29%|██▉       | 7/24 [00:00<00:01,  9.62it/s]  
Processing GGT5--BCOR:  33%|███▎      | 8/24 [00:00<00:01,  9.63it/s]
Processing NF2--ZNF804B:  33%|███▎      | 8/24 [00:00<00:01,  9.63it/s]
Processing NF2--ZNF804B:  38%|███▊      | 9/24 [00:00<00:01,  9.64it/s]
Processing BCL3--ETHE1:  38%|███▊      | 9/24 [00:00<00:01,  9.64it/s] 
Processing BCL3--ETHE1:  42%|████▏     | 10/24 [00:01<00:01,  9.64it/s]
Processing AC024901.1--COL4A5:  42%|████▏     | 10/24 [00:01<00:01,  9.64it/s]
Processing AC024901.1--COL4A5:  46%|████▌     | 11/24 [00:01<00:01,  9.64it/s]
Processing FBN2--AL356022.1:  46%|████▌     | 11/24 [00:01<00:01,  9.64it/s]  
Processing FBN2--AL356022.1:  50%|█████     | 12/24 [00:01<00:01,  9.64it/s]
Processing FBN2--LINC02302:  50%|█████     | 12/24 [00:01<00:01,  9.64it/s] 
Processing FBN2--LINC02302:  54%|█████▍    | 13/24 [00:01<00:01,  9.64it/s]
Processing TVP23C--CDRT4:  54%|█████▍    | 13/24 [00:01<00:01,  9.64it/s]  
Processing TVP23C--CDRT4:  58%|█████▊    | 14/24 [00:01<00:01,  9.64it/s]
Processing ERBB4--ERBB4:  58%|█████▊    | 14/24 [00:01<00:01,  9.64it/s] 
Processing ERBB4--ERBB4:  62%|██████▎   | 15/24 [00:01<00:00,  9.65it/s]
Processing ERBB4--AC093865.1:  62%|██████▎   | 15/24 [00:01<00:00,  9.65it/s]
Processing ERBB4--AC093865.1:  67%|██████▋   | 16/24 [00:01<00:00,  9.65it/s]
Processing PCDHA10--PCDHAC1:  67%|██████▋   | 16/24 [00:01<00:00,  9.65it/s] 
Processing PCDHA10--PCDHAC1:  71%|███████   | 17/24 [00:01<00:00,  9.65it/s]
Processing PCDHA10--PCDHAC2:  71%|███████   | 17/24 [00:01<00:00,  9.65it/s]
Processing PCDHA10--PCDHAC2:  75%|███████▌  | 18/24 [00:01<00:00,  9.65it/s]
Processing PCDHA10--PCDHA13:  75%|███████▌  | 18/24 [00:01<00:00,  9.65it/s]
Processing PCDHA10--PCDHA13:  79%|███████▉  | 19/24 [00:01<00:00,  9.65it/s]
Processing PAICS--RPS4XP18:  79%|███████▉  | 19/24 [00:01<00:00,  9.65it/s] 
Processing PAICS--RPS4XP18:  83%|████████▎ | 20/24 [00:02<00:00,  9.65it/s]
Processing PAICS--RNU6-1032P:  83%|████████▎ | 20/24 [00:02<00:00,  9.65it/s]
Processing PAICS--RNU6-1032P:  88%|████████▊ | 21/24 [00:02<00:00,  9.65it/s]
Processing SPIDR--EFCAB1:  88%|████████▊ | 21/24 [00:02<00:00,  9.65it/s]    
Processing SPIDR--EFCAB1:  92%|█████████▏| 22/24 [00:02<00:00,  9.65it/s]
Processing SPIDR--AC100805.1:  92%|█████████▏| 22/24 [00:02<00:00,  9.65it/s]
Processing SPIDR--AC100805.1:  96%|█████████▌| 23/24 [00:02<00:00,  9.65it/s]
Processing GTF2IRD1--GTF2I:  96%|█████████▌| 23/24 [00:02<00:00,  9.65it/s]  
Processing GTF2IRD1--GTF2I: 100%|██████████| 24/24 [00:02<00:00,  9.65it/s]
Processing GTF2IRD1--GTF2I: 100%|██████████| 24/24 [00:02<00:00,  9.63it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory