File Info
- Filename
- aih-tih-sc-bbc28d-R1_A23YTGFLT4_1.fusions.csv
- Full Path
- s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/7cdc3220492099f814dc4cd8c39a4d/aih-tih-sc-bbc28d-R1_A23YTGFLT4_1.fusions.csv
- Size
- 6.6 KB
- Task
- NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-bbc28d-R1_A23YTGFLT4_1)
- Attempt
Content
View in new tab| Fusion | Databases | Score | Explained score | arriba | starfusion |
| BCR--FBN2 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr22:23182239#chr5:128276160,reading-frame: in-frame,type: translocation,split_reads1: 179,split_reads2: 75,discordant_mates: 0,coverage1: 7820,coverage2: 603,confidence: high | position: chr22:23182239:+#chr5:128276160:-,junction_reads: 265,spanning_reads: 0,ffmp: 1.2799 | |
| AC025884.2--IGH-@-ext | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr15:22258411:+#chr14:105741892:+,junction_reads: 126,spanning_reads: 0,ffmp: 0.3043 | ||
| REST--TENM3 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr4:56919870#chr4:182688166,reading-frame: in-frame,type: deletion,split_reads1: 54,split_reads2: 23,discordant_mates: 1,coverage1: 755,coverage2: 685,confidence: high | position: chr4:56919870:+#chr4:182688166:+,junction_reads: 80,spanning_reads: 1,ffmp: 0.3912 | |
| SYMPK--PTH2 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr19:45838461#chr19:49423342,reading-frame: in-frame,type: duplication,split_reads1: 26,split_reads2: 28,discordant_mates: 1,coverage1: 2120,coverage2: 375,confidence: high | position: chr19:45838461:-#chr19:49423342:-,junction_reads: 60,spanning_reads: 1,ffmp: 0.2946 | |
| AKAP12--ESR1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr6:151305903#chr6:151944173,reading-frame: in-frame,type: deletion,split_reads1: 21,split_reads2: 7,discordant_mates: 0,coverage1: 7006,coverage2: 5181,confidence: high | position: chr6:151305903:+#chr6:151944173:+,junction_reads: 29,spanning_reads: 0,ffmp: 0.1401 | |
| PITPNA--PRPF8 | Mitelman,FusionGDB2 | 0.375 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.000) | position: chr17:1538869#chr17:1662153,reading-frame: in-frame,type: duplication,split_reads1: 13,split_reads2: 13,discordant_mates: 0,coverage1: 1845,coverage2: 1787,confidence: high | position: chr17:1538869:-#chr17:1662153:-,junction_reads: 28,spanning_reads: 0,ffmp: 0.1352 |
| MAP2--POFUT1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr2:209424276#chr20:32215269,reading-frame: .,type: translocation,split_reads1: 7,split_reads2: 17,discordant_mates: 0,coverage1: 17,coverage2: 1763,confidence: high | position: chr2:209424276:+#chr20:32215269:+,junction_reads: 25,spanning_reads: 0,ffmp: 0.1207 | |
| GGT5--BCOR | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr22:24244553#chrX:40055513,reading-frame: in-frame,type: translocation,split_reads1: 10,split_reads2: 5,discordant_mates: 0,coverage1: 516,coverage2: 2010,confidence: high | position: chr22:24244553:-#chrX:40055513:-,junction_reads: 17,spanning_reads: 0,ffmp: 0.0815 | |
| NF2--ZNF804B | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr22:29604112#chr7:89218155,reading-frame: in-frame,type: translocation,split_reads1: 7,split_reads2: 4,discordant_mates: 0,coverage1: 1054,coverage2: 23,confidence: high | position: chr22:29604112:+#chr7:89218155:+,junction_reads: 12,spanning_reads: 0,ffmp: 0.058 | |
| BCL3--ETHE1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr19:44749046#chr19:43526659,reading-frame: out-of-frame,type: inversion,split_reads1: 5,split_reads2: 4,discordant_mates: 0,coverage1: 1365,coverage2: 2292,confidence: high | position: chr19:44749046:+#chr19:43526659:-,junction_reads: 11,spanning_reads: 0,ffmp: 0.0531 | |
| AC024901.1--COL4A5 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr12:19923256#chrX:108539746,reading-frame: .,type: translocation,split_reads1: 4,split_reads2: 4,discordant_mates: 0,coverage1: 5,coverage2: 543,confidence: high | position: chr12:19923256:+#chrX:108539746:+,junction_reads: 8,spanning_reads: 0,ffmp: 0.0386 | |
| FBN2--AL356022.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:128271999#chr14:44655809,reading-frame: out-of-frame,type: translocation,split_reads1: 52,split_reads2: 22,discordant_mates: 0,coverage1: 712,coverage2: 39,confidence: high | ||
| FBN2--LINC02302 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:128271999#chr14:44655809,reading-frame: out-of-frame,type: translocation,split_reads1: 52,split_reads2: 22,discordant_mates: 0,coverage1: 712,coverage2: 39,confidence: high | ||
| TVP23C--CDRT4 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr17:15503098#chr17:15440285,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 20,split_reads2: 22,discordant_mates: 0,coverage1: 649,coverage2: 339,confidence: high | |
| ERBB4--ERBB4 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr2:212538449#chr2:212543592,reading-frame: out-of-frame,type: duplication,split_reads1: 30,split_reads2: 10,discordant_mates: 0,coverage1: 2784,coverage2: 47,confidence: high | ||
| ERBB4--AC093865.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr2:212538449#chr2:212543592,reading-frame: out-of-frame,type: duplication,split_reads1: 30,split_reads2: 10,discordant_mates: 0,coverage1: 2784,coverage2: 47,confidence: high | ||
| PCDHA10--PCDHAC1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140858436#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 15,split_reads2: 23,discordant_mates: 0,coverage1: 996,coverage2: 926,confidence: high | ||
| PCDHA10--PCDHAC2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140858436#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 15,split_reads2: 23,discordant_mates: 0,coverage1: 996,coverage2: 926,confidence: high | ||
| PCDHA10--PCDHA13 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140858436#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 15,split_reads2: 23,discordant_mates: 0,coverage1: 996,coverage2: 926,confidence: high | ||
| PAICS--RPS4XP18 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr4:56453761#chr18:22610193,reading-frame: out-of-frame,type: translocation,split_reads1: 22,split_reads2: 2,discordant_mates: 0,coverage1: 831,coverage2: 4,confidence: high | ||
| PAICS--RNU6-1032P | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr4:56453761#chr18:22610193,reading-frame: out-of-frame,type: translocation,split_reads1: 22,split_reads2: 2,discordant_mates: 0,coverage1: 831,coverage2: 4,confidence: high | ||
| SPIDR--EFCAB1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr8:47673941#chr8:48780599,reading-frame: out-of-frame,type: deletion,split_reads1: 8,split_reads2: 1,discordant_mates: 0,coverage1: 963,coverage2: 1,confidence: high | ||
| SPIDR--AC100805.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr8:47673941#chr8:48780599,reading-frame: out-of-frame,type: deletion,split_reads1: 8,split_reads2: 1,discordant_mates: 0,coverage1: 963,coverage2: 1,confidence: high | ||
| GTF2IRD1--GTF2I | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr7:74555494#chr7:74759906,reading-frame: out-of-frame,type: inversion/3'-3',split_reads1: 6,split_reads2: 3,discordant_mates: 0,coverage1: 1133,coverage2: 21,confidence: high |
25 rows