Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/89/edd65c761c13bc75a05b4976c07e2f/aih-tih-sc-b8457f-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7f/062c3951ed57881737cfc95b9c27e5/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/66d9206e502e825117598616600ac4/aih-tih-sc-b8457f-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7f/062c3951ed57881737cfc95b9c27e5/.command.run
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory