File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/b526fa013da40c36e99cf31b0a3906/.command.log
Size
1.3 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-0754d2-R1_A23YTGFLT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/d35a98df9168b7a772f949eae73836/aih-tih-sc-0754d2-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/b526fa013da40c36e99cf31b0a3906/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/b526fa013da40c36e99cf31b0a3906/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/4538a5f88e032d199d4783bfaf4c7b/aih-tih-sc-0754d2-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
EMP2--C1QTNF4
starfusion
arriba

  0%|          | 0/1 [00:00<?, ?it/s]
Processing EMP2--C1QTNF4:   0%|          | 0/1 [00:00<?, ?it/s]
Processing EMP2--C1QTNF4: 100%|██████████| 1/1 [00:00<00:00,  8.42it/s]
Processing EMP2--C1QTNF4: 100%|██████████| 1/1 [00:00<00:00,  8.40it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory