Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/4f6ef98c74f3e444472f0ba1164e84/fi_workdir/aih-tih-sc-f6bb6f-R1_A23YTGFLT4_1.gtf
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/0ecec0b746cad6032bd7a8bd1114e8/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/0ecec0b746cad6032bd7a8bd1114e8/.command.run
==> STAGING COMPLETE (3 inputs)
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/agat_config.yaml file
------------------------------------------------------------------------------
| Another GFF Analysis Toolkit (AGAT) - Version: v1.2.0 |
| https://github.com/NBISweden/AGAT |
| National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se |
------------------------------------------------------------------------------
------ Start parsing ------
-------------------------- parse options and metadata --------------------------
=> Accessing the feature_levels YAML file
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/feature_levels.yaml file
=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag):
* locus_tag
* gene_id
=> merge_loci option deactivated
=> Machine information:
This script is being run by perl v5.32.1
Bioperl location being used: /usr/local/lib/perl5/site_perl/Bio/
Operating system being used: linux
=> Accessing Ontology
No ontology accessible from the gff file header!
We use the SOFA ontology distributed with AGAT:
/usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo
Read ontology /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo:
4 root terms, and 2596 total terms, and 1516 leaf terms
Filtering ontology:
We found 1861 terms that are sequence_feature or is_a child of it.
--------------------------------- parsing file ---------------------------------
=> Number of line in file: 27016
=> Number of comment lines: 0
=> Fasta included: No
=> Number of features lines: 27016
=> Number of feature type (3rd column): 2
* Level1: 0 =>
* level2: 0 =>
* level3: 2 => exon CDS
* unknown: 0 =>
=>Check because only level3 features:
* Number of feature with Parent attribute:0
* Number of feature with a common attribute:27016
=> Some common attributes and some Parent attributes missing.
/!\ For features where both are missing A single Level2 features (e.g. mRNA) and a single level1 (e.g. gene) will be created by AGAT, and all level3 feautres (e,g, CDS,exon) will be attached to them. This is probably not what you want...
see B. 2.2 and 3. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
/!\ For features where the common attribute or the parent attribute is missing, it would be fine as long as you do not expect isoforms in your annotation (Eukaryote). see B. 4. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
!! You might try to fix the issue by choosing a common tag attribute to use in order to group the features correctly (parameter --ct in agat_convert_sp_gxf2gxf.pl).
=> Version of the Bioperl GFF parser selected by AGAT: 2
------ End parsing (done in 5 second) ------
------ Start checks ------
---------------------------- Check1: feature types -----------------------------
----------------------------------- ontology -----------------------------------
All feature types in agreement with the Ontology.
------------------------------------- agat -------------------------------------
AGAT can deal with all the encountered feature types (3rd column)
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check2: duplicates ------------------------------
None found
------------------------------ done in 0 seconds -------------------------------
-------------------------- Check3: sequential bucket ---------------------------
Nothing to check as sequential bucket!
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check4: l2 linked to l3 ----------------------------
L1 and L2 created:
AC009432.1--IQCH HAVANA gene 4809 34932 . + . FI_gene_label "IQCH^ENSG00000103599.20" ; ID "AC009432.1--IQCH^IQCH^ENSG00000103599.20" ; ccdsid "CCDS32273.1" ; exon_id "ENSE00001198458.5" ; exon_number 1 ; gene_id "AC009432.1--IQCH^IQCH^ENSG00000103599.20" ; gene_name IQCH ; gene_type protein_coding ; havana_gene "OTTHUMG00000133231.7" ; havana_transcript "OTTHUMT00000256969.2" ; hgnc_id "HGNC:25721" ; level 2 ; orig_coord_info "chr15,67254897,67254947,+" ; protein_id "ENSP00000336861.4" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "AC009432.1--IQCH^ENST00000335894.9" ; transcript_name "IQCH-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC009432.1--IQCH HAVANA mRNA 4809 34932 . + . FI_gene_label "IQCH^ENSG00000103599.20" ; ID "AC009432.1--IQCH^ENST00000335894.9" ; Parent "AC009432.1--IQCH^IQCH^ENSG00000103599.20" ; ccdsid "CCDS32273.1" ; exon_id "ENSE00001198458.5" ; exon_number 1 ; gene_id "AC009432.1--IQCH^IQCH^ENSG00000103599.20" ; gene_name IQCH ; gene_type protein_coding ; havana_gene "OTTHUMG00000133231.7" ; havana_transcript "OTTHUMT00000256969.2" ; hgnc_id "HGNC:25721" ; level 2 ; orig_coord_info "chr15,67254897,67254947,+" ; protein_id "ENSP00000336861.4" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "AC009432.1--IQCH^ENST00000335894.9" ; transcript_name "IQCH-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC009432.2--IQCH HAVANA gene 7487 37610 . + . FI_gene_label "IQCH^ENSG00000103599.20" ; ID "AC009432.2--IQCH^IQCH^ENSG00000103599.20" ; ccdsid "CCDS32273.1" ; exon_id "ENSE00001198458.5" ; exon_number 1 ; gene_id "AC009432.2--IQCH^IQCH^ENSG00000103599.20" ; gene_name IQCH ; gene_type protein_coding ; havana_gene "OTTHUMG00000133231.7" ; havana_transcript "OTTHUMT00000256969.2" ; hgnc_id "HGNC:25721" ; level 2 ; orig_coord_info "chr15,67254897,67254947,+" ; protein_id "ENSP00000336861.4" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "AC009432.2--IQCH^ENST00000335894.9" ; transcript_name "IQCH-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC009432.2--IQCH HAVANA mRNA 7487 37610 . + . FI_gene_label "IQCH^ENSG00000103599.20" ; ID "AC009432.2--IQCH^ENST00000335894.9" ; Parent "AC009432.2--IQCH^IQCH^ENSG00000103599.20" ; ccdsid "CCDS32273.1" ; exon_id "ENSE00001198458.5" ; exon_number 1 ; gene_id "AC009432.2--IQCH^IQCH^ENSG00000103599.20" ; gene_name IQCH ; gene_type protein_coding ; havana_gene "OTTHUMG00000133231.7" ; havana_transcript "OTTHUMT00000256969.2" ; hgnc_id "HGNC:25721" ; level 2 ; orig_coord_info "chr15,67254897,67254947,+" ; protein_id "ENSP00000336861.4" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "AC009432.2--IQCH^ENST00000335894.9" ; transcript_name "IQCH-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC022308.1--IQCH HAVANA gene 5437 35560 . + . FI_gene_label "IQCH^ENSG00000103599.20" ; ID "AC022308.1--IQCH^IQCH^ENSG00000103599.20" ; ccdsid "CCDS32273.1" ; exon_id "ENSE00001198458.5" ; exon_number 1 ; gene_id "AC022308.1--IQCH^IQCH^ENSG00000103599.20" ; gene_name IQCH ; gene_type protein_coding ; havana_gene "OTTHUMG00000133231.7" ; havana_transcript "OTTHUMT00000256969.2" ; hgnc_id "HGNC:25721" ; level 2 ; orig_coord_info "chr15,67254897,67254947,+" ; protein_id "ENSP00000336861.4" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "AC022308.1--IQCH^ENST00000335894.9" ; transcript_name "IQCH-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC022308.1--IQCH HAVANA mRNA 5437 35560 . + . FI_gene_label "IQCH^ENSG00000103599.20" ; ID "AC022308.1--IQCH^ENST00000335894.9" ; Parent "AC022308.1--IQCH^IQCH^ENSG00000103599.20" ; ccdsid "CCDS32273.1" ; exon_id "ENSE00001198458.5" ; exon_number 1 ; gene_id "AC022308.1--IQCH^IQCH^ENSG00000103599.20" ; gene_name IQCH ; gene_type protein_coding ; havana_gene "OTTHUMG00000133231.7" ; havana_transcript "OTTHUMT00000256969.2" ; hgnc_id "HGNC:25721" ; level 2 ; orig_coord_info "chr15,67254897,67254947,+" ; protein_id "ENSP00000336861.4" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "AC022308.1--IQCH^ENST00000335894.9" ; transcript_name "IQCH-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC092807.3--DDAH1 HAVANA gene 13647 23704 . + . FI_gene_label "DDAH1^ENSG00000153904.21" ; ID "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; ccdsid "CCDS705.1" ; exon_id "ENSE00001013010.7" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; gene_name DDAH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000191181.3" ; havana_transcript "OTTHUMT00000029189.3" ; hgnc_id "HGNC:2715" ; level 2 ; orig_coord_info "chr1,85464743,85465045,-" ; protein_id "ENSP00000284031.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC092807.3--DDAH1^ENST00000284031.13" ; transcript_name "DDAH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC092807.3--DDAH1 HAVANA mRNA 13647 23704 . + . FI_gene_label "DDAH1^ENSG00000153904.21" ; ID "AC092807.3--DDAH1^ENST00000284031.13" ; Parent "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; ccdsid "CCDS705.1" ; exon_id "ENSE00001013010.7" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; gene_name DDAH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000191181.3" ; havana_transcript "OTTHUMT00000029189.3" ; hgnc_id "HGNC:2715" ; level 2 ; orig_coord_info "chr1,85464743,85465045,-" ; protein_id "ENSP00000284031.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC092807.3--DDAH1^ENST00000284031.13" ; transcript_name "DDAH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ACTBP6--ACTB HAVANA gene 6203 10583 . + . FI_gene_label "ACTB^ENSG00000075624.17" ; ID "ACTBP6--ACTB^ACTB^ENSG00000075624.17" ; exon_id "ENSE00003542066.1" ; exon_number 3 ; gene_id "ACTBP6--ACTB^ACTB^ENSG00000075624.17" ; gene_name ACTB ; gene_type protein_coding ; havana_gene "OTTHUMG00000023268.12" ; havana_transcript "OTTHUMT00000324028.2" ; hgnc_id "HGNC:132" ; level 2 ; orig_coord_info "chr7,5529535,5529657,-" ; protein_id "ENSP00000401032.1" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF dotter_confirmed ; transcript_id "ACTBP6--ACTB^ENST00000414620.1" ; transcript_name "ACTB-201" ; transcript_support_level 4 ; transcript_type protein_coding
ACTBP6--ACTB HAVANA mRNA 6203 10583 . + . FI_gene_label "ACTB^ENSG00000075624.17" ; ID "ACTBP6--ACTB^ENST00000414620.1" ; Parent "ACTBP6--ACTB^ACTB^ENSG00000075624.17" ; exon_id "ENSE00003542066.1" ; exon_number 3 ; gene_id "ACTBP6--ACTB^ACTB^ENSG00000075624.17" ; gene_name ACTB ; gene_type protein_coding ; havana_gene "OTTHUMG00000023268.12" ; havana_transcript "OTTHUMT00000324028.2" ; hgnc_id "HGNC:132" ; level 2 ; orig_coord_info "chr7,5529535,5529657,-" ; protein_id "ENSP00000401032.1" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF dotter_confirmed ; transcript_id "ACTBP6--ACTB^ENST00000414620.1" ; transcript_name "ACTB-201" ; transcript_support_level 4 ; transcript_type protein_coding
L1 and L2 created:
ADAM10--IL16 HAVANA gene 1085 35422 . + . FI_gene_label "ADAM10^ENSG00000137845.15" ; ID "ADAM10--IL16^ADAM10^ENSG00000137845.15" ; ccdsid "CCDS10167.1" ; exon_id "ENSE00002542201.1" ; exon_number 1 ; gene_id "ADAM10--IL16^ADAM10^ENSG00000137845.15" ; gene_name ADAM10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132633.11" ; havana_transcript "OTTHUMT00000255880.4" ; hgnc_id "HGNC:188" ; level 2 ; orig_coord_info "chr15,58749480,58749534,-" ; protein_id "ENSP00000260408.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ADAM10--IL16^ENST00000260408.8" ; transcript_name "ADAM10-201" ; transcript_support_level 1 ; transcript_type protein_coding
ADAM10--IL16 HAVANA mRNA 1085 35422 . + . FI_gene_label "ADAM10^ENSG00000137845.15" ; ID "ADAM10--IL16^ENST00000260408.8" ; Parent "ADAM10--IL16^ADAM10^ENSG00000137845.15" ; ccdsid "CCDS10167.1" ; exon_id "ENSE00002542201.1" ; exon_number 1 ; gene_id "ADAM10--IL16^ADAM10^ENSG00000137845.15" ; gene_name ADAM10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132633.11" ; havana_transcript "OTTHUMT00000255880.4" ; hgnc_id "HGNC:188" ; level 2 ; orig_coord_info "chr15,58749480,58749534,-" ; protein_id "ENSP00000260408.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ADAM10--IL16^ENST00000260408.8" ; transcript_name "ADAM10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ADAM10--IL16 HAVANA gene 43573 67025 . + . FI_gene_label "IL16^ENSG00000172349.17" ; ID "ADAM10--IL16^IL16^ENSG00000172349.17" ; ccdsid "CCDS42069.1" ; exon_id "ENSE00001519131.1" ; exon_number 1 ; gene_id "ADAM10--IL16^IL16^ENSG00000172349.17" ; gene_name IL16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000144186.9" ; havana_transcript "OTTHUMT00000303952.2" ; hgnc_id "HGNC:5980" ; level 2 ; orig_coord_info "chr15,81225400,81225711,+" ; protein_id "ENSP00000302935.4" ; tag basic appris_principal_4 CCDS ; transcript_id "ADAM10--IL16^ENST00000302987.8" ; transcript_name "IL16-201" ; transcript_support_level 1 ; transcript_type protein_coding
ADAM10--IL16 HAVANA mRNA 43573 67025 . + . FI_gene_label "IL16^ENSG00000172349.17" ; ID "ADAM10--IL16^ENST00000302987.8" ; Parent "ADAM10--IL16^IL16^ENSG00000172349.17" ; ccdsid "CCDS42069.1" ; exon_id "ENSE00001519131.1" ; exon_number 1 ; gene_id "ADAM10--IL16^IL16^ENSG00000172349.17" ; gene_name IL16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000144186.9" ; havana_transcript "OTTHUMT00000303952.2" ; hgnc_id "HGNC:5980" ; level 2 ; orig_coord_info "chr15,81225400,81225711,+" ; protein_id "ENSP00000302935.4" ; tag basic appris_principal_4 CCDS ; transcript_id "ADAM10--IL16^ENST00000302987.8" ; transcript_name "IL16-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ADAMTS7P4--SNUPN HAVANA gene 23469 34710 . + . FI_gene_label "SNUPN^ENSG00000169371.14" ; ID "ADAMTS7P4--SNUPN^SNUPN^ENSG00000169371.14" ; ccdsid "CCDS10281.1" ; exon_id "ENSE00003561820.1" ; exon_number 2 ; gene_id "ADAMTS7P4--SNUPN^SNUPN^ENSG00000169371.14" ; gene_name SNUPN ; gene_type protein_coding ; havana_gene "OTTHUMG00000142833.6" ; havana_transcript "OTTHUMT00000286468.2" ; hgnc_id "HGNC:14245" ; level 2 ; orig_coord_info "chr15,75620894,75621051,-" ; protein_id "ENSP00000309831.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ADAMTS7P4--SNUPN^ENST00000308588.10" ; transcript_name "SNUPN-201" ; transcript_support_level 1 ; transcript_type protein_coding
ADAMTS7P4--SNUPN HAVANA mRNA 23469 34710 . + . FI_gene_label "SNUPN^ENSG00000169371.14" ; ID "ADAMTS7P4--SNUPN^ENST00000308588.10" ; Parent "ADAMTS7P4--SNUPN^SNUPN^ENSG00000169371.14" ; ccdsid "CCDS10281.1" ; exon_id "ENSE00003561820.1" ; exon_number 2 ; gene_id "ADAMTS7P4--SNUPN^SNUPN^ENSG00000169371.14" ; gene_name SNUPN ; gene_type protein_coding ; havana_gene "OTTHUMG00000142833.6" ; havana_transcript "OTTHUMT00000286468.2" ; hgnc_id "HGNC:14245" ; level 2 ; orig_coord_info "chr15,75620894,75621051,-" ; protein_id "ENSP00000309831.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ADAMTS7P4--SNUPN^ENST00000308588.10" ; transcript_name "SNUPN-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AKAP13--ADAMTS7P4 HAVANA gene 1159 58149 . + . FI_gene_label "AKAP13^ENSG00000170776.22" ; ID "AKAP13--ADAMTS7P4^AKAP13^ENSG00000170776.22" ; ccdsid "CCDS32320.1" ; exon_id "ENSE00002705517.1" ; exon_number 2 ; gene_id "AKAP13--ADAMTS7P4^AKAP13^ENSG00000170776.22" ; gene_name AKAP13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172205.3" ; havana_transcript "OTTHUMT00000417319.1" ; hgnc_id "HGNC:371" ; level 2 ; orig_coord_info "chr15,85485721,85485753,+" ; protein_id "ENSP00000354718.2" ; tag basic appris_alternative_2 CCDS ; transcript_id "AKAP13--ADAMTS7P4^ENST00000361243.6" ; transcript_name "AKAP13-201" ; transcript_support_level 1 ; transcript_type protein_coding
AKAP13--ADAMTS7P4 HAVANA mRNA 1159 58149 . + . FI_gene_label "AKAP13^ENSG00000170776.22" ; ID "AKAP13--ADAMTS7P4^ENST00000361243.6" ; Parent "AKAP13--ADAMTS7P4^AKAP13^ENSG00000170776.22" ; ccdsid "CCDS32320.1" ; exon_id "ENSE00002705517.1" ; exon_number 2 ; gene_id "AKAP13--ADAMTS7P4^AKAP13^ENSG00000170776.22" ; gene_name AKAP13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172205.3" ; havana_transcript "OTTHUMT00000417319.1" ; hgnc_id "HGNC:371" ; level 2 ; orig_coord_info "chr15,85485721,85485753,+" ; protein_id "ENSP00000354718.2" ; tag basic appris_alternative_2 CCDS ; transcript_id "AKAP13--ADAMTS7P4^ENST00000361243.6" ; transcript_name "AKAP13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AKAP13--SEMA6D HAVANA gene 75369 90441 . + . FI_gene_label "SEMA6D^ENSG00000137872.17" ; ID "AKAP13--SEMA6D^SEMA6D^ENSG00000137872.17" ; ccdsid "CCDS32225.1" ; exon_id "ENSE00001216682.4" ; exon_number 2 ; gene_id "AKAP13--SEMA6D^SEMA6D^ENSG00000137872.17" ; gene_name SEMA6D ; gene_type protein_coding ; havana_gene "OTTHUMG00000172110.3" ; havana_transcript "OTTHUMT00000416868.1" ; hgnc_id "HGNC:16770" ; level 2 ; orig_coord_info "chr15,47759799,47759907,+" ; protein_id "ENSP00000324857.5" ; tag alternative_5_UTR basic appris_principal_4 CCDS ; transcript_id "AKAP13--SEMA6D^ENST00000316364.9" ; transcript_name "SEMA6D-201" ; transcript_support_level 1 ; transcript_type protein_coding
AKAP13--SEMA6D HAVANA mRNA 75369 90441 . + . FI_gene_label "SEMA6D^ENSG00000137872.17" ; ID "AKAP13--SEMA6D^ENST00000316364.9" ; Parent "AKAP13--SEMA6D^SEMA6D^ENSG00000137872.17" ; ccdsid "CCDS32225.1" ; exon_id "ENSE00001216682.4" ; exon_number 2 ; gene_id "AKAP13--SEMA6D^SEMA6D^ENSG00000137872.17" ; gene_name SEMA6D ; gene_type protein_coding ; havana_gene "OTTHUMG00000172110.3" ; havana_transcript "OTTHUMT00000416868.1" ; hgnc_id "HGNC:16770" ; level 2 ; orig_coord_info "chr15,47759799,47759907,+" ; protein_id "ENSP00000324857.5" ; tag alternative_5_UTR basic appris_principal_4 CCDS ; transcript_id "AKAP13--SEMA6D^ENST00000316364.9" ; transcript_name "SEMA6D-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AKAP13--SEMA6D HAVANA gene 1159 58149 . + . FI_gene_label "AKAP13^ENSG00000170776.22" ; ID "AKAP13--SEMA6D^AKAP13^ENSG00000170776.22" ; ccdsid "CCDS32320.1" ; exon_id "ENSE00002705517.1" ; exon_number 2 ; gene_id "AKAP13--SEMA6D^AKAP13^ENSG00000170776.22" ; gene_name AKAP13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172205.3" ; havana_transcript "OTTHUMT00000417319.1" ; hgnc_id "HGNC:371" ; level 2 ; orig_coord_info "chr15,85485721,85485753,+" ; protein_id "ENSP00000354718.2" ; tag basic appris_alternative_2 CCDS ; transcript_id "AKAP13--SEMA6D^ENST00000361243.6" ; transcript_name "AKAP13-201" ; transcript_support_level 1 ; transcript_type protein_coding
AKAP13--SEMA6D HAVANA mRNA 1159 58149 . + . FI_gene_label "AKAP13^ENSG00000170776.22" ; ID "AKAP13--SEMA6D^ENST00000361243.6" ; Parent "AKAP13--SEMA6D^AKAP13^ENSG00000170776.22" ; ccdsid "CCDS32320.1" ; exon_id "ENSE00002705517.1" ; exon_number 2 ; gene_id "AKAP13--SEMA6D^AKAP13^ENSG00000170776.22" ; gene_name AKAP13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172205.3" ; havana_transcript "OTTHUMT00000417319.1" ; hgnc_id "HGNC:371" ; level 2 ; orig_coord_info "chr15,85485721,85485753,+" ; protein_id "ENSP00000354718.2" ; tag basic appris_alternative_2 CCDS ; transcript_id "AKAP13--SEMA6D^ENST00000361243.6" ; transcript_name "AKAP13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AKAP13--SNUPN HAVANA gene 65642 76883 . + . FI_gene_label "SNUPN^ENSG00000169371.14" ; ID "AKAP13--SNUPN^SNUPN^ENSG00000169371.14" ; ccdsid "CCDS10281.1" ; exon_id "ENSE00003561820.1" ; exon_number 2 ; gene_id "AKAP13--SNUPN^SNUPN^ENSG00000169371.14" ; gene_name SNUPN ; gene_type protein_coding ; havana_gene "OTTHUMG00000142833.6" ; havana_transcript "OTTHUMT00000286468.2" ; hgnc_id "HGNC:14245" ; level 2 ; orig_coord_info "chr15,75620894,75621051,-" ; protein_id "ENSP00000309831.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AKAP13--SNUPN^ENST00000308588.10" ; transcript_name "SNUPN-201" ; transcript_support_level 1 ; transcript_type protein_coding
AKAP13--SNUPN HAVANA mRNA 65642 76883 . + . FI_gene_label "SNUPN^ENSG00000169371.14" ; ID "AKAP13--SNUPN^ENST00000308588.10" ; Parent "AKAP13--SNUPN^SNUPN^ENSG00000169371.14" ; ccdsid "CCDS10281.1" ; exon_id "ENSE00003561820.1" ; exon_number 2 ; gene_id "AKAP13--SNUPN^SNUPN^ENSG00000169371.14" ; gene_name SNUPN ; gene_type protein_coding ; havana_gene "OTTHUMG00000142833.6" ; havana_transcript "OTTHUMT00000286468.2" ; hgnc_id "HGNC:14245" ; level 2 ; orig_coord_info "chr15,75620894,75621051,-" ; protein_id "ENSP00000309831.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AKAP13--SNUPN^ENST00000308588.10" ; transcript_name "SNUPN-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AKAP13--SNUPN HAVANA gene 1159 58149 . + . FI_gene_label "AKAP13^ENSG00000170776.22" ; ID "AKAP13--SNUPN^AKAP13^ENSG00000170776.22" ; ccdsid "CCDS32320.1" ; exon_id "ENSE00002705517.1" ; exon_number 2 ; gene_id "AKAP13--SNUPN^AKAP13^ENSG00000170776.22" ; gene_name AKAP13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172205.3" ; havana_transcript "OTTHUMT00000417319.1" ; hgnc_id "HGNC:371" ; level 2 ; orig_coord_info "chr15,85485721,85485753,+" ; protein_id "ENSP00000354718.2" ; tag basic appris_alternative_2 CCDS ; transcript_id "AKAP13--SNUPN^ENST00000361243.6" ; transcript_name "AKAP13-201" ; transcript_support_level 1 ; transcript_type protein_coding
AKAP13--SNUPN HAVANA mRNA 1159 58149 . + . FI_gene_label "AKAP13^ENSG00000170776.22" ; ID "AKAP13--SNUPN^ENST00000361243.6" ; Parent "AKAP13--SNUPN^AKAP13^ENSG00000170776.22" ; ccdsid "CCDS32320.1" ; exon_id "ENSE00002705517.1" ; exon_number 2 ; gene_id "AKAP13--SNUPN^AKAP13^ENSG00000170776.22" ; gene_name AKAP13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172205.3" ; havana_transcript "OTTHUMT00000417319.1" ; hgnc_id "HGNC:371" ; level 2 ; orig_coord_info "chr15,85485721,85485753,+" ; protein_id "ENSP00000354718.2" ; tag basic appris_alternative_2 CCDS ; transcript_id "AKAP13--SNUPN^ENST00000361243.6" ; transcript_name "AKAP13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AL139042.1--CNR1 HAVANA gene 19895 21313 . + . FI_gene_label "CNR1^ENSG00000118432.12" ; ID "AL139042.1--CNR1^CNR1^ENSG00000118432.12" ; exon_id "ENSE00001436850.5" ; exon_number 1 ; gene_id "AL139042.1--CNR1^CNR1^ENSG00000118432.12" ; gene_name CNR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015184.5" ; havana_transcript "OTTHUMT00000041463.3" ; hgnc_id "HGNC:2159" ; level 2 ; orig_coord_info "chr6,88145172,88145274,-" ; protein_id "ENSP00000355418.5" ; tag basic ; transcript_id "AL139042.1--CNR1^ENST00000362094.5" ; transcript_name "CNR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AL139042.1--CNR1 HAVANA mRNA 19895 21313 . + . FI_gene_label "CNR1^ENSG00000118432.12" ; ID "AL139042.1--CNR1^ENST00000362094.5" ; Parent "AL139042.1--CNR1^CNR1^ENSG00000118432.12" ; exon_id "ENSE00001436850.5" ; exon_number 1 ; gene_id "AL139042.1--CNR1^CNR1^ENSG00000118432.12" ; gene_name CNR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015184.5" ; havana_transcript "OTTHUMT00000041463.3" ; hgnc_id "HGNC:2159" ; level 2 ; orig_coord_info "chr6,88145172,88145274,-" ; protein_id "ENSP00000355418.5" ; tag basic ; transcript_id "AL139042.1--CNR1^ENST00000362094.5" ; transcript_name "CNR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AL390334.1--NFIB HAVANA gene 18340 22136 . + . FI_gene_label "NFIB^ENSG00000147862.17" ; ID "AL390334.1--NFIB^NFIB^ENSG00000147862.17" ; exon_id "ENSE00001816839.1" ; exon_number 1 ; gene_id "AL390334.1--NFIB^NFIB^ENSG00000147862.17" ; gene_name NFIB ; gene_type protein_coding ; havana_gene "OTTHUMG00000021027.8" ; havana_transcript "OTTHUMT00000055473.1" ; hgnc_id "HGNC:7785" ; level 1 ; orig_coord_info "chr9,14313482,14313511,-" ; protein_id "ENSP00000370308.3" ; tag basic exp_conf ; transcript_id "AL390334.1--NFIB^ENST00000380921.3" ; transcript_name "NFIB-201" ; transcript_support_level 1 ; transcript_type protein_coding
AL390334.1--NFIB HAVANA mRNA 18340 22136 . + . FI_gene_label "NFIB^ENSG00000147862.17" ; ID "AL390334.1--NFIB^ENST00000380921.3" ; Parent "AL390334.1--NFIB^NFIB^ENSG00000147862.17" ; exon_id "ENSE00001816839.1" ; exon_number 1 ; gene_id "AL390334.1--NFIB^NFIB^ENSG00000147862.17" ; gene_name NFIB ; gene_type protein_coding ; havana_gene "OTTHUMG00000021027.8" ; havana_transcript "OTTHUMT00000055473.1" ; hgnc_id "HGNC:7785" ; level 1 ; orig_coord_info "chr9,14313482,14313511,-" ; protein_id "ENSP00000370308.3" ; tag basic exp_conf ; transcript_id "AL390334.1--NFIB^ENST00000380921.3" ; transcript_name "NFIB-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
APH1A--PI4KB HAVANA gene 1558 3936 . + . FI_gene_label "APH1A^ENSG00000117362.13" ; ID "APH1A--PI4KB^APH1A^ENSG00000117362.13" ; exon_id "ENSE00001627612.1" ; exon_number 1 ; gene_id "APH1A--PI4KB^APH1A^ENSG00000117362.13" ; gene_name APH1A ; gene_type protein_coding ; havana_gene "OTTHUMG00000012545.4" ; havana_transcript "OTTHUMT00000095847.2" ; hgnc_id "HGNC:29509" ; level 2 ; orig_coord_info "chr1,150268698,150268810,-" ; protein_id "ENSP00000236017.5" ; tag mRNA_end_NF cds_end_NF ; transcript_id "APH1A--PI4KB^ENST00000236017.5" ; transcript_name "APH1A-201" ; transcript_support_level 2 ; transcript_type protein_coding
APH1A--PI4KB HAVANA mRNA 1558 3936 . + . FI_gene_label "APH1A^ENSG00000117362.13" ; ID "APH1A--PI4KB^ENST00000236017.5" ; Parent "APH1A--PI4KB^APH1A^ENSG00000117362.13" ; exon_id "ENSE00001627612.1" ; exon_number 1 ; gene_id "APH1A--PI4KB^APH1A^ENSG00000117362.13" ; gene_name APH1A ; gene_type protein_coding ; havana_gene "OTTHUMG00000012545.4" ; havana_transcript "OTTHUMT00000095847.2" ; hgnc_id "HGNC:29509" ; level 2 ; orig_coord_info "chr1,150268698,150268810,-" ; protein_id "ENSP00000236017.5" ; tag mRNA_end_NF cds_end_NF ; transcript_id "APH1A--PI4KB^ENST00000236017.5" ; transcript_name "APH1A-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
APH1A--PI4KB HAVANA gene 8479 23871 . + . FI_gene_label "PI4KB^ENSG00000143393.16" ; ID "APH1A--PI4KB^PI4KB^ENSG00000143393.16" ; ccdsid "CCDS55638.1" ; exon_id "ENSE00003463601.1" ; exon_number 4 ; gene_id "APH1A--PI4KB^PI4KB^ENSG00000143393.16" ; gene_name PI4KB ; gene_type protein_coding ; havana_gene "OTTHUMG00000012348.14" ; havana_transcript "OTTHUMT00000034403.1" ; hgnc_id "HGNC:8984" ; level 2 ; orig_coord_info "chr1,151315573,151316481,-" ; protein_id "ENSP00000357866.1" ; tag alternative_5_UTR basic appris_principal_4 CCDS ; transcript_id "APH1A--PI4KB^ENST00000368872.5" ; transcript_name "PI4KB-201" ; transcript_support_level 5 ; transcript_type protein_coding
APH1A--PI4KB HAVANA mRNA 8479 23871 . + . FI_gene_label "PI4KB^ENSG00000143393.16" ; ID "APH1A--PI4KB^ENST00000368872.5" ; Parent "APH1A--PI4KB^PI4KB^ENSG00000143393.16" ; ccdsid "CCDS55638.1" ; exon_id "ENSE00003463601.1" ; exon_number 4 ; gene_id "APH1A--PI4KB^PI4KB^ENSG00000143393.16" ; gene_name PI4KB ; gene_type protein_coding ; havana_gene "OTTHUMG00000012348.14" ; havana_transcript "OTTHUMT00000034403.1" ; hgnc_id "HGNC:8984" ; level 2 ; orig_coord_info "chr1,151315573,151316481,-" ; protein_id "ENSP00000357866.1" ; tag alternative_5_UTR basic appris_principal_4 CCDS ; transcript_id "APH1A--PI4KB^ENST00000368872.5" ; transcript_name "PI4KB-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
ARID3B--AC012378.1 HAVANA gene 1015 13381 . + . FI_gene_label "ARID3B^ENSG00000179361.18" ; ID "ARID3B--AC012378.1^ARID3B^ENSG00000179361.18" ; ccdsid "CCDS10264.1" ; exon_id "ENSE00003658328.1" ; exon_number 2 ; gene_id "ARID3B--AC012378.1^ARID3B^ENSG00000179361.18" ; gene_name ARID3B ; gene_type protein_coding ; havana_gene "OTTHUMG00000141321.3" ; havana_transcript "OTTHUMT00000280688.2" ; hgnc_id "HGNC:14350" ; level 2 ; orig_coord_info "chr15,74543937,74544488,+" ; protein_id "ENSP00000343126.5" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "ARID3B--AC012378.1^ENST00000346246.10" ; transcript_name "ARID3B-201" ; transcript_support_level 1 ; transcript_type protein_coding
ARID3B--AC012378.1 HAVANA mRNA 1015 13381 . + . FI_gene_label "ARID3B^ENSG00000179361.18" ; ID "ARID3B--AC012378.1^ENST00000346246.10" ; Parent "ARID3B--AC012378.1^ARID3B^ENSG00000179361.18" ; ccdsid "CCDS10264.1" ; exon_id "ENSE00003658328.1" ; exon_number 2 ; gene_id "ARID3B--AC012378.1^ARID3B^ENSG00000179361.18" ; gene_name ARID3B ; gene_type protein_coding ; havana_gene "OTTHUMG00000141321.3" ; havana_transcript "OTTHUMT00000280688.2" ; hgnc_id "HGNC:14350" ; level 2 ; orig_coord_info "chr15,74543937,74544488,+" ; protein_id "ENSP00000343126.5" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "ARID3B--AC012378.1^ENST00000346246.10" ; transcript_name "ARID3B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ARID3B--SQOR HAVANA gene 18562 30437 . + . FI_gene_label "SQOR^ENSG00000137767.14" ; ID "ARID3B--SQOR^SQOR^ENSG00000137767.14" ; ccdsid "CCDS10127.1" ; exon_id "ENSE00003488246.1" ; exon_number 2 ; gene_id "ARID3B--SQOR^SQOR^ENSG00000137767.14" ; gene_name SQOR ; gene_type protein_coding ; havana_gene "OTTHUMG00000131476.5" ; havana_transcript "OTTHUMT00000254319.3" ; hgnc_id "HGNC:20390" ; level 2 ; orig_coord_info "chr15,45658924,45659157,+" ; protein_id "ENSP00000260324.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ARID3B--SQOR^ENST00000260324.12" ; transcript_name "SQOR-201" ; transcript_support_level 1 ; transcript_type protein_coding
ARID3B--SQOR HAVANA mRNA 18562 30437 . + . FI_gene_label "SQOR^ENSG00000137767.14" ; ID "ARID3B--SQOR^ENST00000260324.12" ; Parent "ARID3B--SQOR^SQOR^ENSG00000137767.14" ; ccdsid "CCDS10127.1" ; exon_id "ENSE00003488246.1" ; exon_number 2 ; gene_id "ARID3B--SQOR^SQOR^ENSG00000137767.14" ; gene_name SQOR ; gene_type protein_coding ; havana_gene "OTTHUMG00000131476.5" ; havana_transcript "OTTHUMT00000254319.3" ; hgnc_id "HGNC:20390" ; level 2 ; orig_coord_info "chr15,45658924,45659157,+" ; protein_id "ENSP00000260324.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ARID3B--SQOR^ENST00000260324.12" ; transcript_name "SQOR-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ARID3B--SQOR HAVANA gene 1015 13381 . + . FI_gene_label "ARID3B^ENSG00000179361.18" ; ID "ARID3B--SQOR^ARID3B^ENSG00000179361.18" ; ccdsid "CCDS10264.1" ; exon_id "ENSE00003658328.1" ; exon_number 2 ; gene_id "ARID3B--SQOR^ARID3B^ENSG00000179361.18" ; gene_name ARID3B ; gene_type protein_coding ; havana_gene "OTTHUMG00000141321.3" ; havana_transcript "OTTHUMT00000280688.2" ; hgnc_id "HGNC:14350" ; level 2 ; orig_coord_info "chr15,74543937,74544488,+" ; protein_id "ENSP00000343126.5" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "ARID3B--SQOR^ENST00000346246.10" ; transcript_name "ARID3B-201" ; transcript_support_level 1 ; transcript_type protein_coding
ARID3B--SQOR HAVANA mRNA 1015 13381 . + . FI_gene_label "ARID3B^ENSG00000179361.18" ; ID "ARID3B--SQOR^ENST00000346246.10" ; Parent "ARID3B--SQOR^ARID3B^ENSG00000179361.18" ; ccdsid "CCDS10264.1" ; exon_id "ENSE00003658328.1" ; exon_number 2 ; gene_id "ARID3B--SQOR^ARID3B^ENSG00000179361.18" ; gene_name ARID3B ; gene_type protein_coding ; havana_gene "OTTHUMG00000141321.3" ; havana_transcript "OTTHUMT00000280688.2" ; hgnc_id "HGNC:14350" ; level 2 ; orig_coord_info "chr15,74543937,74544488,+" ; protein_id "ENSP00000343126.5" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "ARID3B--SQOR^ENST00000346246.10" ; transcript_name "ARID3B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ARL6IP1--CCP110 HAVANA gene 1024 8182 . + . FI_gene_label "ARL6IP1^ENSG00000170540.15" ; ID "ARL6IP1--CCP110^ARL6IP1^ENSG00000170540.15" ; ccdsid "CCDS10572.1" ; exon_id "ENSE00002595404.2" ; exon_number 1 ; gene_id "ARL6IP1--CCP110^ARL6IP1^ENSG00000170540.15" ; gene_name ARL6IP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131367.6" ; havana_transcript "OTTHUMT00000254156.4" ; hgnc_id "HGNC:697" ; level 2 ; orig_coord_info "chr16,18801431,18801466,-" ; protein_id "ENSP00000306788.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ARL6IP1--CCP110^ENST00000304414.12" ; transcript_name "ARL6IP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
ARL6IP1--CCP110 HAVANA mRNA 1024 8182 . + . FI_gene_label "ARL6IP1^ENSG00000170540.15" ; ID "ARL6IP1--CCP110^ENST00000304414.12" ; Parent "ARL6IP1--CCP110^ARL6IP1^ENSG00000170540.15" ; ccdsid "CCDS10572.1" ; exon_id "ENSE00002595404.2" ; exon_number 1 ; gene_id "ARL6IP1--CCP110^ARL6IP1^ENSG00000170540.15" ; gene_name ARL6IP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131367.6" ; havana_transcript "OTTHUMT00000254156.4" ; hgnc_id "HGNC:697" ; level 2 ; orig_coord_info "chr16,18801431,18801466,-" ; protein_id "ENSP00000306788.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ARL6IP1--CCP110^ENST00000304414.12" ; transcript_name "ARL6IP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ARL6IP1--CCP110 HAVANA gene 11229 30436 . + . FI_gene_label "CCP110^ENSG00000103540.16" ; ID "ARL6IP1--CCP110^CCP110^ENSG00000103540.16" ; ccdsid "CCDS55992.1" ; exon_id "ENSE00001292632.2" ; exon_number 2 ; gene_id "ARL6IP1--CCP110^CCP110^ENSG00000103540.16" ; gene_name CCP110 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131459.6" ; havana_transcript "OTTHUMT00000254284.2" ; hgnc_id "HGNC:24342" ; level 2 ; orig_coord_info "chr16,19527882,19528022,+" ; protein_id "ENSP00000370803.5" ; tag basic appris_principal_4 CCDS ; transcript_id "ARL6IP1--CCP110^ENST00000381396.9" ; transcript_name "CCP110-201" ; transcript_support_level 1 ; transcript_type protein_coding
ARL6IP1--CCP110 HAVANA mRNA 11229 30436 . + . FI_gene_label "CCP110^ENSG00000103540.16" ; ID "ARL6IP1--CCP110^ENST00000381396.9" ; Parent "ARL6IP1--CCP110^CCP110^ENSG00000103540.16" ; ccdsid "CCDS55992.1" ; exon_id "ENSE00001292632.2" ; exon_number 2 ; gene_id "ARL6IP1--CCP110^CCP110^ENSG00000103540.16" ; gene_name CCP110 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131459.6" ; havana_transcript "OTTHUMT00000254284.2" ; hgnc_id "HGNC:24342" ; level 2 ; orig_coord_info "chr16,19527882,19528022,+" ; protein_id "ENSP00000370803.5" ; tag basic appris_principal_4 CCDS ; transcript_id "ARL6IP1--CCP110^ENST00000381396.9" ; transcript_name "CCP110-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ARNT--ADAMTSL4 HAVANA gene 28863 40388 . + . FI_gene_label "ADAMTSL4^ENSG00000143382.16" ; ID "ARNT--ADAMTSL4^ADAMTSL4^ENSG00000143382.16" ; ccdsid "CCDS955.1" ; exon_id "ENSE00002696455.1" ; exon_number 3 ; gene_id "ARNT--ADAMTSL4^ADAMTSL4^ENSG00000143382.16" ; gene_name ADAMTSL4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000034863.6" ; hgnc_id "HGNC:19706" ; level 2 ; orig_coord_info "chr1,150552289,150552308,+" ; protein_id "ENSP00000271643.4" ; tag RNA_Seq_supported_only basic MANE_Select appris_principal_2 CCDS ; transcript_id "ARNT--ADAMTSL4^ENST00000271643.9" ; transcript_name "ADAMTSL4-201" ; transcript_support_level 5 ; transcript_type protein_coding
ARNT--ADAMTSL4 HAVANA mRNA 28863 40388 . + . FI_gene_label "ADAMTSL4^ENSG00000143382.16" ; ID "ARNT--ADAMTSL4^ENST00000271643.9" ; Parent "ARNT--ADAMTSL4^ADAMTSL4^ENSG00000143382.16" ; ccdsid "CCDS955.1" ; exon_id "ENSE00002696455.1" ; exon_number 3 ; gene_id "ARNT--ADAMTSL4^ADAMTSL4^ENSG00000143382.16" ; gene_name ADAMTSL4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000034863.6" ; hgnc_id "HGNC:19706" ; level 2 ; orig_coord_info "chr1,150552289,150552308,+" ; protein_id "ENSP00000271643.4" ; tag RNA_Seq_supported_only basic MANE_Select appris_principal_2 CCDS ; transcript_id "ARNT--ADAMTSL4^ENST00000271643.9" ; transcript_name "ADAMTSL4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
ARNT--ADAMTSL4 HAVANA gene 1130 24677 . + . FI_gene_label "ARNT^ENSG00000143437.21" ; ID "ARNT--ADAMTSL4^ARNT^ENSG00000143437.21" ; ccdsid "CCDS65642.1" ; exon_id "ENSE00002072659.1" ; exon_number 1 ; gene_id "ARNT--ADAMTSL4^ARNT^ENSG00000143437.21" ; gene_name ARNT ; gene_type protein_coding ; havana_gene "OTTHUMG00000035011.4" ; havana_transcript "OTTHUMT00000360630.1" ; hgnc_id "HGNC:700" ; level 1 ; orig_coord_info "chr1,150876543,150876567,-" ; protein_id "ENSP00000346372.2" ; tag basic appris_alternative_1 exp_conf CCDS ; transcript_id "ARNT--ADAMTSL4^ENST00000354396.6" ; transcript_name "ARNT-201" ; transcript_support_level 1 ; transcript_type protein_coding
ARNT--ADAMTSL4 HAVANA mRNA 1130 24677 . + . FI_gene_label "ARNT^ENSG00000143437.21" ; ID "ARNT--ADAMTSL4^ENST00000354396.6" ; Parent "ARNT--ADAMTSL4^ARNT^ENSG00000143437.21" ; ccdsid "CCDS65642.1" ; exon_id "ENSE00002072659.1" ; exon_number 1 ; gene_id "ARNT--ADAMTSL4^ARNT^ENSG00000143437.21" ; gene_name ARNT ; gene_type protein_coding ; havana_gene "OTTHUMG00000035011.4" ; havana_transcript "OTTHUMT00000360630.1" ; hgnc_id "HGNC:700" ; level 1 ; orig_coord_info "chr1,150876543,150876567,-" ; protein_id "ENSP00000346372.2" ; tag basic appris_alternative_1 exp_conf CCDS ; transcript_id "ARNT--ADAMTSL4^ENST00000354396.6" ; transcript_name "ARNT-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ARPP19--AC009432.1 HAVANA gene 1854 11460 . + . FI_gene_label "ARPP19^ENSG00000128989.11" ; ID "ARPP19--AC009432.1^ARPP19^ENSG00000128989.11" ; ccdsid "CCDS32242.1" ; exon_id "ENSE00002581678.2" ; exon_number 1 ; gene_id "ARPP19--AC009432.1^ARPP19^ENSG00000128989.11" ; gene_name ARPP19 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172677.3" ; havana_transcript "OTTHUMT00000419835.1" ; hgnc_id "HGNC:16967" ; level 2 ; orig_coord_info "chr15,52568848,52568892,-" ; protein_id "ENSP00000249822.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ARPP19--AC009432.1^ENST00000249822.9" ; transcript_name "ARPP19-201" ; transcript_support_level 1 ; transcript_type protein_coding
ARPP19--AC009432.1 HAVANA mRNA 1854 11460 . + . FI_gene_label "ARPP19^ENSG00000128989.11" ; ID "ARPP19--AC009432.1^ENST00000249822.9" ; Parent "ARPP19--AC009432.1^ARPP19^ENSG00000128989.11" ; ccdsid "CCDS32242.1" ; exon_id "ENSE00002581678.2" ; exon_number 1 ; gene_id "ARPP19--AC009432.1^ARPP19^ENSG00000128989.11" ; gene_name ARPP19 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172677.3" ; havana_transcript "OTTHUMT00000419835.1" ; hgnc_id "HGNC:16967" ; level 2 ; orig_coord_info "chr15,52568848,52568892,-" ; protein_id "ENSP00000249822.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ARPP19--AC009432.1^ENST00000249822.9" ; transcript_name "ARPP19-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ARPP19--AC022308.1 HAVANA gene 1854 11460 . + . FI_gene_label "ARPP19^ENSG00000128989.11" ; ID "ARPP19--AC022308.1^ARPP19^ENSG00000128989.11" ; ccdsid "CCDS32242.1" ; exon_id "ENSE00002581678.2" ; exon_number 1 ; gene_id "ARPP19--AC022308.1^ARPP19^ENSG00000128989.11" ; gene_name ARPP19 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172677.3" ; havana_transcript "OTTHUMT00000419835.1" ; hgnc_id "HGNC:16967" ; level 2 ; orig_coord_info "chr15,52568848,52568892,-" ; protein_id "ENSP00000249822.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ARPP19--AC022308.1^ENST00000249822.9" ; transcript_name "ARPP19-201" ; transcript_support_level 1 ; transcript_type protein_coding
ARPP19--AC022308.1 HAVANA mRNA 1854 11460 . + . FI_gene_label "ARPP19^ENSG00000128989.11" ; ID "ARPP19--AC022308.1^ENST00000249822.9" ; Parent "ARPP19--AC022308.1^ARPP19^ENSG00000128989.11" ; ccdsid "CCDS32242.1" ; exon_id "ENSE00002581678.2" ; exon_number 1 ; gene_id "ARPP19--AC022308.1^ARPP19^ENSG00000128989.11" ; gene_name ARPP19 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172677.3" ; havana_transcript "OTTHUMT00000419835.1" ; hgnc_id "HGNC:16967" ; level 2 ; orig_coord_info "chr15,52568848,52568892,-" ; protein_id "ENSP00000249822.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ARPP19--AC022308.1^ENST00000249822.9" ; transcript_name "ARPP19-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ARPP19--IQCH HAVANA gene 1854 11460 . + . FI_gene_label "ARPP19^ENSG00000128989.11" ; ID "ARPP19--IQCH^ARPP19^ENSG00000128989.11" ; ccdsid "CCDS32242.1" ; exon_id "ENSE00002581678.2" ; exon_number 1 ; gene_id "ARPP19--IQCH^ARPP19^ENSG00000128989.11" ; gene_name ARPP19 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172677.3" ; havana_transcript "OTTHUMT00000419835.1" ; hgnc_id "HGNC:16967" ; level 2 ; orig_coord_info "chr15,52568848,52568892,-" ; protein_id "ENSP00000249822.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ARPP19--IQCH^ENST00000249822.9" ; transcript_name "ARPP19-201" ; transcript_support_level 1 ; transcript_type protein_coding
ARPP19--IQCH HAVANA mRNA 1854 11460 . + . FI_gene_label "ARPP19^ENSG00000128989.11" ; ID "ARPP19--IQCH^ENST00000249822.9" ; Parent "ARPP19--IQCH^ARPP19^ENSG00000128989.11" ; ccdsid "CCDS32242.1" ; exon_id "ENSE00002581678.2" ; exon_number 1 ; gene_id "ARPP19--IQCH^ARPP19^ENSG00000128989.11" ; gene_name ARPP19 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172677.3" ; havana_transcript "OTTHUMT00000419835.1" ; hgnc_id "HGNC:16967" ; level 2 ; orig_coord_info "chr15,52568848,52568892,-" ; protein_id "ENSP00000249822.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ARPP19--IQCH^ENST00000249822.9" ; transcript_name "ARPP19-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ARPP19--IQCH HAVANA gene 14461 44584 . + . FI_gene_label "IQCH^ENSG00000103599.20" ; ID "ARPP19--IQCH^IQCH^ENSG00000103599.20" ; ccdsid "CCDS32273.1" ; exon_id "ENSE00001198458.5" ; exon_number 1 ; gene_id "ARPP19--IQCH^IQCH^ENSG00000103599.20" ; gene_name IQCH ; gene_type protein_coding ; havana_gene "OTTHUMG00000133231.7" ; havana_transcript "OTTHUMT00000256969.2" ; hgnc_id "HGNC:25721" ; level 2 ; orig_coord_info "chr15,67254897,67254947,+" ; protein_id "ENSP00000336861.4" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "ARPP19--IQCH^ENST00000335894.9" ; transcript_name "IQCH-201" ; transcript_support_level 1 ; transcript_type protein_coding
ARPP19--IQCH HAVANA mRNA 14461 44584 . + . FI_gene_label "IQCH^ENSG00000103599.20" ; ID "ARPP19--IQCH^ENST00000335894.9" ; Parent "ARPP19--IQCH^IQCH^ENSG00000103599.20" ; ccdsid "CCDS32273.1" ; exon_id "ENSE00001198458.5" ; exon_number 1 ; gene_id "ARPP19--IQCH^IQCH^ENSG00000103599.20" ; gene_name IQCH ; gene_type protein_coding ; havana_gene "OTTHUMG00000133231.7" ; havana_transcript "OTTHUMT00000256969.2" ; hgnc_id "HGNC:25721" ; level 2 ; orig_coord_info "chr15,67254897,67254947,+" ; protein_id "ENSP00000336861.4" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "ARPP19--IQCH^ENST00000335894.9" ; transcript_name "IQCH-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ASH1L--ARNT HAVANA gene 42299 65846 . + . FI_gene_label "ARNT^ENSG00000143437.21" ; ID "ASH1L--ARNT^ARNT^ENSG00000143437.21" ; ccdsid "CCDS65642.1" ; exon_id "ENSE00002072659.1" ; exon_number 1 ; gene_id "ASH1L--ARNT^ARNT^ENSG00000143437.21" ; gene_name ARNT ; gene_type protein_coding ; havana_gene "OTTHUMG00000035011.4" ; havana_transcript "OTTHUMT00000360630.1" ; hgnc_id "HGNC:700" ; level 1 ; orig_coord_info "chr1,150876543,150876567,-" ; protein_id "ENSP00000346372.2" ; tag basic appris_alternative_1 exp_conf CCDS ; transcript_id "ASH1L--ARNT^ENST00000354396.6" ; transcript_name "ARNT-201" ; transcript_support_level 1 ; transcript_type protein_coding
ASH1L--ARNT HAVANA mRNA 42299 65846 . + . FI_gene_label "ARNT^ENSG00000143437.21" ; ID "ASH1L--ARNT^ENST00000354396.6" ; Parent "ASH1L--ARNT^ARNT^ENSG00000143437.21" ; ccdsid "CCDS65642.1" ; exon_id "ENSE00002072659.1" ; exon_number 1 ; gene_id "ASH1L--ARNT^ARNT^ENSG00000143437.21" ; gene_name ARNT ; gene_type protein_coding ; havana_gene "OTTHUMG00000035011.4" ; havana_transcript "OTTHUMT00000360630.1" ; hgnc_id "HGNC:700" ; level 1 ; orig_coord_info "chr1,150876543,150876567,-" ; protein_id "ENSP00000346372.2" ; tag basic appris_alternative_1 exp_conf CCDS ; transcript_id "ASH1L--ARNT^ENST00000354396.6" ; transcript_name "ARNT-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ASH1L--ARNT HAVANA gene 1470 39169 . + . FI_gene_label "ASH1L^ENSG00000116539.14" ; ID "ASH1L--ARNT^ASH1L^ENSG00000116539.14" ; exon_id "ENSE00001446941.1" ; exon_number 2 ; gene_id "ASH1L--ARNT^ASH1L^ENSG00000116539.14" ; gene_name ASH1L ; gene_type protein_coding ; havana_gene "OTTHUMG00000014011.4" ; havana_transcript "OTTHUMT00000039400.1" ; hgnc_id "HGNC:19088" ; level 2 ; orig_coord_info "chr1,155521100,155521519,-" ; protein_id "ENSP00000357330.3" ; tag basic appris_alternative_2 ; transcript_id "ASH1L--ARNT^ENST00000368346.7" ; transcript_name "ASH1L-201" ; transcript_support_level 1 ; transcript_type protein_coding
ASH1L--ARNT HAVANA mRNA 1470 39169 . + . FI_gene_label "ASH1L^ENSG00000116539.14" ; ID "ASH1L--ARNT^ENST00000368346.7" ; Parent "ASH1L--ARNT^ASH1L^ENSG00000116539.14" ; exon_id "ENSE00001446941.1" ; exon_number 2 ; gene_id "ASH1L--ARNT^ASH1L^ENSG00000116539.14" ; gene_name ASH1L ; gene_type protein_coding ; havana_gene "OTTHUMG00000014011.4" ; havana_transcript "OTTHUMT00000039400.1" ; hgnc_id "HGNC:19088" ; level 2 ; orig_coord_info "chr1,155521100,155521519,-" ; protein_id "ENSP00000357330.3" ; tag basic appris_alternative_2 ; transcript_id "ASH1L--ARNT^ENST00000368346.7" ; transcript_name "ASH1L-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ATF6--AL583804.1 HAVANA gene 1023 32433 . + . FI_gene_label "ATF6^ENSG00000118217.7" ; ID "ATF6--AL583804.1^ATF6^ENSG00000118217.7" ; ccdsid "CCDS1235.1" ; exon_id "ENSE00001445975.2" ; exon_number 1 ; gene_id "ATF6--AL583804.1^ATF6^ENSG00000118217.7" ; gene_name ATF6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000023961.3" ; havana_transcript "OTTHUMT00000060304.3" ; hgnc_id "HGNC:791" ; level 2 ; orig_coord_info "chr1,161766361,161766442,+" ; protein_id "ENSP00000356919.3" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "ATF6--AL583804.1^ENST00000367942.4" ; transcript_name "ATF6-201" ; transcript_support_level 1 ; transcript_type protein_coding
ATF6--AL583804.1 HAVANA mRNA 1023 32433 . + . FI_gene_label "ATF6^ENSG00000118217.7" ; ID "ATF6--AL583804.1^ENST00000367942.4" ; Parent "ATF6--AL583804.1^ATF6^ENSG00000118217.7" ; ccdsid "CCDS1235.1" ; exon_id "ENSE00001445975.2" ; exon_number 1 ; gene_id "ATF6--AL583804.1^ATF6^ENSG00000118217.7" ; gene_name ATF6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000023961.3" ; havana_transcript "OTTHUMT00000060304.3" ; hgnc_id "HGNC:791" ; level 2 ; orig_coord_info "chr1,161766361,161766442,+" ; protein_id "ENSP00000356919.3" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "ATF6--AL583804.1^ENST00000367942.4" ; transcript_name "ATF6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ATF6--FMO7P HAVANA gene 1023 32433 . + . FI_gene_label "ATF6^ENSG00000118217.7" ; ID "ATF6--FMO7P^ATF6^ENSG00000118217.7" ; ccdsid "CCDS1235.1" ; exon_id "ENSE00001445975.2" ; exon_number 1 ; gene_id "ATF6--FMO7P^ATF6^ENSG00000118217.7" ; gene_name ATF6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000023961.3" ; havana_transcript "OTTHUMT00000060304.3" ; hgnc_id "HGNC:791" ; level 2 ; orig_coord_info "chr1,161766361,161766442,+" ; protein_id "ENSP00000356919.3" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "ATF6--FMO7P^ENST00000367942.4" ; transcript_name "ATF6-201" ; transcript_support_level 1 ; transcript_type protein_coding
ATF6--FMO7P HAVANA mRNA 1023 32433 . + . FI_gene_label "ATF6^ENSG00000118217.7" ; ID "ATF6--FMO7P^ENST00000367942.4" ; Parent "ATF6--FMO7P^ATF6^ENSG00000118217.7" ; ccdsid "CCDS1235.1" ; exon_id "ENSE00001445975.2" ; exon_number 1 ; gene_id "ATF6--FMO7P^ATF6^ENSG00000118217.7" ; gene_name ATF6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000023961.3" ; havana_transcript "OTTHUMT00000060304.3" ; hgnc_id "HGNC:791" ; level 2 ; orig_coord_info "chr1,161766361,161766442,+" ; protein_id "ENSP00000356919.3" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "ATF6--FMO7P^ENST00000367942.4" ; transcript_name "ATF6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ATF6--UHMK1 HAVANA gene 1023 32433 . + . FI_gene_label "ATF6^ENSG00000118217.7" ; ID "ATF6--UHMK1^ATF6^ENSG00000118217.7" ; ccdsid "CCDS1235.1" ; exon_id "ENSE00001445975.2" ; exon_number 1 ; gene_id "ATF6--UHMK1^ATF6^ENSG00000118217.7" ; gene_name ATF6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000023961.3" ; havana_transcript "OTTHUMT00000060304.3" ; hgnc_id "HGNC:791" ; level 2 ; orig_coord_info "chr1,161766361,161766442,+" ; protein_id "ENSP00000356919.3" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "ATF6--UHMK1^ENST00000367942.4" ; transcript_name "ATF6-201" ; transcript_support_level 1 ; transcript_type protein_coding
ATF6--UHMK1 HAVANA mRNA 1023 32433 . + . FI_gene_label "ATF6^ENSG00000118217.7" ; ID "ATF6--UHMK1^ENST00000367942.4" ; Parent "ATF6--UHMK1^ATF6^ENSG00000118217.7" ; ccdsid "CCDS1235.1" ; exon_id "ENSE00001445975.2" ; exon_number 1 ; gene_id "ATF6--UHMK1^ATF6^ENSG00000118217.7" ; gene_name ATF6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000023961.3" ; havana_transcript "OTTHUMT00000060304.3" ; hgnc_id "HGNC:791" ; level 2 ; orig_coord_info "chr1,161766361,161766442,+" ; protein_id "ENSP00000356919.3" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "ATF6--UHMK1^ENST00000367942.4" ; transcript_name "ATF6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ATF6--UHMK1 HAVANA gene 39390 53726 . + . FI_gene_label "UHMK1^ENSG00000152332.16" ; ID "ATF6--UHMK1^UHMK1^ENSG00000152332.16" ; ccdsid "CCDS1239.1" ; exon_id "ENSE00001888659.2" ; exon_number 1 ; gene_id "ATF6--UHMK1^UHMK1^ENSG00000152332.16" ; gene_name UHMK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000031373.2" ; havana_transcript "OTTHUMT00000076788.2" ; hgnc_id "HGNC:19683" ; level 2 ; orig_coord_info "chr1,162498001,162498268,+" ; protein_id "ENSP00000420270.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ATF6--UHMK1^ENST00000489294.2" ; transcript_name "UHMK1-202" ; transcript_support_level 1 ; transcript_type protein_coding
ATF6--UHMK1 HAVANA mRNA 39390 53726 . + . FI_gene_label "UHMK1^ENSG00000152332.16" ; ID "ATF6--UHMK1^ENST00000489294.2" ; Parent "ATF6--UHMK1^UHMK1^ENSG00000152332.16" ; ccdsid "CCDS1239.1" ; exon_id "ENSE00001888659.2" ; exon_number 1 ; gene_id "ATF6--UHMK1^UHMK1^ENSG00000152332.16" ; gene_name UHMK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000031373.2" ; havana_transcript "OTTHUMT00000076788.2" ; hgnc_id "HGNC:19683" ; level 2 ; orig_coord_info "chr1,162498001,162498268,+" ; protein_id "ENSP00000420270.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ATF6--UHMK1^ENST00000489294.2" ; transcript_name "UHMK1-202" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ATF6--UQCRBP2 HAVANA gene 1023 32433 . + . FI_gene_label "ATF6^ENSG00000118217.7" ; ID "ATF6--UQCRBP2^ATF6^ENSG00000118217.7" ; ccdsid "CCDS1235.1" ; exon_id "ENSE00001445975.2" ; exon_number 1 ; gene_id "ATF6--UQCRBP2^ATF6^ENSG00000118217.7" ; gene_name ATF6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000023961.3" ; havana_transcript "OTTHUMT00000060304.3" ; hgnc_id "HGNC:791" ; level 2 ; orig_coord_info "chr1,161766361,161766442,+" ; protein_id "ENSP00000356919.3" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "ATF6--UQCRBP2^ENST00000367942.4" ; transcript_name "ATF6-201" ; transcript_support_level 1 ; transcript_type protein_coding
ATF6--UQCRBP2 HAVANA mRNA 1023 32433 . + . FI_gene_label "ATF6^ENSG00000118217.7" ; ID "ATF6--UQCRBP2^ENST00000367942.4" ; Parent "ATF6--UQCRBP2^ATF6^ENSG00000118217.7" ; ccdsid "CCDS1235.1" ; exon_id "ENSE00001445975.2" ; exon_number 1 ; gene_id "ATF6--UQCRBP2^ATF6^ENSG00000118217.7" ; gene_name ATF6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000023961.3" ; havana_transcript "OTTHUMT00000060304.3" ; hgnc_id "HGNC:791" ; level 2 ; orig_coord_info "chr1,161766361,161766442,+" ; protein_id "ENSP00000356919.3" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "ATF6--UQCRBP2^ENST00000367942.4" ; transcript_name "ATF6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
C15orf61--RBPMS2 HAVANA gene 9842 17678 . + . FI_gene_label "RBPMS2^ENSG00000166831.9" ; ID "C15orf61--RBPMS2^RBPMS2^ENSG00000166831.9" ; ccdsid "CCDS32271.1" ; exon_id "ENSE00001303912.5" ; exon_number 1 ; gene_id "C15orf61--RBPMS2^RBPMS2^ENSG00000166831.9" ; gene_name RBPMS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172423.3" ; havana_transcript "OTTHUMT00000418466.2" ; hgnc_id "HGNC:19098" ; level 2 ; orig_coord_info "chr15,64775233,64775319,-" ; protein_id "ENSP00000300069.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "C15orf61--RBPMS2^ENST00000300069.5" ; transcript_name "RBPMS2-201" ; transcript_support_level 1 ; transcript_type protein_coding
C15orf61--RBPMS2 HAVANA mRNA 9842 17678 . + . FI_gene_label "RBPMS2^ENSG00000166831.9" ; ID "C15orf61--RBPMS2^ENST00000300069.5" ; Parent "C15orf61--RBPMS2^RBPMS2^ENSG00000166831.9" ; ccdsid "CCDS32271.1" ; exon_id "ENSE00001303912.5" ; exon_number 1 ; gene_id "C15orf61--RBPMS2^RBPMS2^ENSG00000166831.9" ; gene_name RBPMS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172423.3" ; havana_transcript "OTTHUMT00000418466.2" ; hgnc_id "HGNC:19098" ; level 2 ; orig_coord_info "chr15,64775233,64775319,-" ; protein_id "ENSP00000300069.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "C15orf61--RBPMS2^ENST00000300069.5" ; transcript_name "RBPMS2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
C15orf61--RBPMS2 HAVANA gene 1001 6841 . + . FI_gene_label "C15orf61^ENSG00000189227.6" ; ID "C15orf61--RBPMS2^C15orf61^ENSG00000189227.6" ; ccdsid "CCDS45289.1" ; exon_id "ENSE00001376397.5" ; exon_number 1 ; gene_id "C15orf61--RBPMS2^C15orf61^ENSG00000189227.6" ; gene_name C15orf61 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172248.5" ; havana_transcript "OTTHUMT00000417492.3" ; hgnc_id "HGNC:34453" ; level 2 ; orig_coord_info "chr15,67521249,67521594,+" ; protein_id "ENSP00000342254.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "C15orf61--RBPMS2^ENST00000342683.6" ; transcript_name "C15orf61-201" ; transcript_support_level 1 ; transcript_type protein_coding
C15orf61--RBPMS2 HAVANA mRNA 1001 6841 . + . FI_gene_label "C15orf61^ENSG00000189227.6" ; ID "C15orf61--RBPMS2^ENST00000342683.6" ; Parent "C15orf61--RBPMS2^C15orf61^ENSG00000189227.6" ; ccdsid "CCDS45289.1" ; exon_id "ENSE00001376397.5" ; exon_number 1 ; gene_id "C15orf61--RBPMS2^C15orf61^ENSG00000189227.6" ; gene_name C15orf61 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172248.5" ; havana_transcript "OTTHUMT00000417492.3" ; hgnc_id "HGNC:34453" ; level 2 ; orig_coord_info "chr15,67521249,67521594,+" ; protein_id "ENSP00000342254.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "C15orf61--RBPMS2^ENST00000342683.6" ; transcript_name "C15orf61-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CA8--LINC01301 HAVANA gene 1001 16811 . + . FI_gene_label "CA8^ENSG00000178538.10" ; ID "CA8--LINC01301^CA8^ENSG00000178538.10" ; ccdsid "CCDS6174.1" ; exon_id "ENSE00002154258.2" ; exon_number 1 ; gene_id "CA8--LINC01301^CA8^ENSG00000178538.10" ; gene_name CA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165325.2" ; havana_transcript "OTTHUMT00000383445.2" ; hgnc_id "HGNC:1382" ; level 2 ; orig_coord_info "chr8,60281048,60281147,-" ; protein_id "ENSP00000314407.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CA8--LINC01301^ENST00000317995.5" ; transcript_name "CA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
CA8--LINC01301 HAVANA mRNA 1001 16811 . + . FI_gene_label "CA8^ENSG00000178538.10" ; ID "CA8--LINC01301^ENST00000317995.5" ; Parent "CA8--LINC01301^CA8^ENSG00000178538.10" ; ccdsid "CCDS6174.1" ; exon_id "ENSE00002154258.2" ; exon_number 1 ; gene_id "CA8--LINC01301^CA8^ENSG00000178538.10" ; gene_name CA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165325.2" ; havana_transcript "OTTHUMT00000383445.2" ; hgnc_id "HGNC:1382" ; level 2 ; orig_coord_info "chr8,60281048,60281147,-" ; protein_id "ENSP00000314407.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CA8--LINC01301^ENST00000317995.5" ; transcript_name "CA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CASK--PRTG HAVANA gene 1126 47017 . + . FI_gene_label "CASK^ENSG00000147044.23" ; ID "CASK--PRTG^CASK^ENSG00000147044.23" ; exon_id "ENSE00001476451.3" ; exon_number 1 ; gene_id "CASK--PRTG^CASK^ENSG00000147044.23" ; gene_name CASK ; gene_type protein_coding ; havana_gene "OTTHUMG00000021378.10" ; havana_transcript "OTTHUMT00000056279.3" ; hgnc_id "HGNC:1497" ; level 2 ; orig_coord_info "chrX,41922930,41922988,-" ; protein_id "ENSP00000367396.2" ; tag not_organism_supported basic ; transcript_id "CASK--PRTG^ENST00000378154.3" ; transcript_name "CASK-201" ; transcript_support_level 5 ; transcript_type protein_coding
CASK--PRTG HAVANA mRNA 1126 47017 . + . FI_gene_label "CASK^ENSG00000147044.23" ; ID "CASK--PRTG^ENST00000378154.3" ; Parent "CASK--PRTG^CASK^ENSG00000147044.23" ; exon_id "ENSE00001476451.3" ; exon_number 1 ; gene_id "CASK--PRTG^CASK^ENSG00000147044.23" ; gene_name CASK ; gene_type protein_coding ; havana_gene "OTTHUMG00000021378.10" ; havana_transcript "OTTHUMT00000056279.3" ; hgnc_id "HGNC:1497" ; level 2 ; orig_coord_info "chrX,41922930,41922988,-" ; protein_id "ENSP00000367396.2" ; tag not_organism_supported basic ; transcript_id "CASK--PRTG^ENST00000378154.3" ; transcript_name "CASK-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
CASK--PRTG HAVANA gene 54638 88169 . + . FI_gene_label "PRTG^ENSG00000166450.13" ; ID "CASK--PRTG^PRTG^ENSG00000166450.13" ; ccdsid "CCDS42040.1" ; exon_id "ENSE00001536751.2" ; exon_number 1 ; gene_id "CASK--PRTG^PRTG^ENSG00000166450.13" ; gene_name PRTG ; gene_type protein_coding ; havana_gene "OTTHUMG00000172591.5" ; havana_transcript "OTTHUMT00000419357.2" ; hgnc_id "HGNC:26373" ; level 2 ; orig_coord_info "chr15,55742838,55742931,-" ; protein_id "ENSP00000373937.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CASK--PRTG^ENST00000389286.9" ; transcript_name "PRTG-201" ; transcript_support_level 1 ; transcript_type protein_coding
CASK--PRTG HAVANA mRNA 54638 88169 . + . FI_gene_label "PRTG^ENSG00000166450.13" ; ID "CASK--PRTG^ENST00000389286.9" ; Parent "CASK--PRTG^PRTG^ENSG00000166450.13" ; ccdsid "CCDS42040.1" ; exon_id "ENSE00001536751.2" ; exon_number 1 ; gene_id "CASK--PRTG^PRTG^ENSG00000166450.13" ; gene_name PRTG ; gene_type protein_coding ; havana_gene "OTTHUMG00000172591.5" ; havana_transcript "OTTHUMT00000419357.2" ; hgnc_id "HGNC:26373" ; level 2 ; orig_coord_info "chr15,55742838,55742931,-" ; protein_id "ENSP00000373937.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CASK--PRTG^ENST00000389286.9" ; transcript_name "PRTG-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CCDC33--AC018943.1 HAVANA gene 23266 29918 . + . FI_gene_label "CCDC33^ENSG00000140481.15" ; ID "CCDC33--AC018943.1^CCDC33^ENSG00000140481.15" ; ccdsid "CCDS42059.1" ; exon_id "ENSE00002538139.1" ; exon_number 1 ; gene_id "CCDC33--AC018943.1^CCDC33^ENSG00000140481.15" ; gene_name CCDC33 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172621.6" ; havana_transcript "OTTHUMT00000419494.1" ; hgnc_id "HGNC:26552" ; level 2 ; orig_coord_info "chr15,74318590,74318658,+" ; protein_id "ENSP00000268082.4" ; tag basic CCDS ; transcript_id "CCDC33--AC018943.1^ENST00000268082.4" ; transcript_name "CCDC33-201" ; transcript_support_level 1 ; transcript_type protein_coding
CCDC33--AC018943.1 HAVANA mRNA 23266 29918 . + . FI_gene_label "CCDC33^ENSG00000140481.15" ; ID "CCDC33--AC018943.1^ENST00000268082.4" ; Parent "CCDC33--AC018943.1^CCDC33^ENSG00000140481.15" ; ccdsid "CCDS42059.1" ; exon_id "ENSE00002538139.1" ; exon_number 1 ; gene_id "CCDC33--AC018943.1^CCDC33^ENSG00000140481.15" ; gene_name CCDC33 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172621.6" ; havana_transcript "OTTHUMT00000419494.1" ; hgnc_id "HGNC:26552" ; level 2 ; orig_coord_info "chr15,74318590,74318658,+" ; protein_id "ENSP00000268082.4" ; tag basic CCDS ; transcript_id "CCDC33--AC018943.1^ENST00000268082.4" ; transcript_name "CCDC33-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CCDC33--INSYN1-AS1 HAVANA gene 23266 29918 . + . FI_gene_label "CCDC33^ENSG00000140481.15" ; ID "CCDC33--INSYN1-AS1^CCDC33^ENSG00000140481.15" ; ccdsid "CCDS42059.1" ; exon_id "ENSE00002538139.1" ; exon_number 1 ; gene_id "CCDC33--INSYN1-AS1^CCDC33^ENSG00000140481.15" ; gene_name CCDC33 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172621.6" ; havana_transcript "OTTHUMT00000419494.1" ; hgnc_id "HGNC:26552" ; level 2 ; orig_coord_info "chr15,74318590,74318658,+" ; protein_id "ENSP00000268082.4" ; tag basic CCDS ; transcript_id "CCDC33--INSYN1-AS1^ENST00000268082.4" ; transcript_name "CCDC33-201" ; transcript_support_level 1 ; transcript_type protein_coding
CCDC33--INSYN1-AS1 HAVANA mRNA 23266 29918 . + . FI_gene_label "CCDC33^ENSG00000140481.15" ; ID "CCDC33--INSYN1-AS1^ENST00000268082.4" ; Parent "CCDC33--INSYN1-AS1^CCDC33^ENSG00000140481.15" ; ccdsid "CCDS42059.1" ; exon_id "ENSE00002538139.1" ; exon_number 1 ; gene_id "CCDC33--INSYN1-AS1^CCDC33^ENSG00000140481.15" ; gene_name CCDC33 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172621.6" ; havana_transcript "OTTHUMT00000419494.1" ; hgnc_id "HGNC:26552" ; level 2 ; orig_coord_info "chr15,74318590,74318658,+" ; protein_id "ENSP00000268082.4" ; tag basic CCDS ; transcript_id "CCDC33--INSYN1-AS1^ENST00000268082.4" ; transcript_name "CCDC33-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CGN--VPS45 HAVANA gene 1878 20090 . + . FI_gene_label "CGN^ENSG00000143375.15" ; ID "CGN--VPS45^CGN^ENSG00000143375.15" ; ccdsid "CCDS999.1" ; exon_id "ENSE00003796769.1" ; exon_number 2 ; gene_id "CGN--VPS45^CGN^ENSG00000143375.15" ; gene_name CGN ; gene_type protein_coding ; havana_gene "OTTHUMG00000012497.16" ; havana_transcript "OTTHUMT00000034900.3" ; hgnc_id "HGNC:17429" ; level 2 ; orig_coord_info "chr1,151518520,151519392,+" ; protein_id "ENSP00000271636.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CGN--VPS45^ENST00000271636.12" ; transcript_name "CGN-201" ; transcript_support_level 1 ; transcript_type protein_coding
CGN--VPS45 HAVANA mRNA 1878 20090 . + . FI_gene_label "CGN^ENSG00000143375.15" ; ID "CGN--VPS45^ENST00000271636.12" ; Parent "CGN--VPS45^CGN^ENSG00000143375.15" ; ccdsid "CCDS999.1" ; exon_id "ENSE00003796769.1" ; exon_number 2 ; gene_id "CGN--VPS45^CGN^ENSG00000143375.15" ; gene_name CGN ; gene_type protein_coding ; havana_gene "OTTHUMG00000012497.16" ; havana_transcript "OTTHUMT00000034900.3" ; hgnc_id "HGNC:17429" ; level 2 ; orig_coord_info "chr1,151518520,151519392,+" ; protein_id "ENSP00000271636.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CGN--VPS45^ENST00000271636.12" ; transcript_name "CGN-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CGN--VPS45 HAVANA gene 23194 40315 . + . FI_gene_label "VPS45^ENSG00000136631.15" ; ID "CGN--VPS45^VPS45^ENSG00000136631.15" ; ccdsid "CCDS60244.1" ; exon_id "ENSE00003726336.1" ; exon_number 2 ; gene_id "CGN--VPS45^VPS45^ENSG00000136631.15" ; gene_name VPS45 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012511.10" ; havana_transcript "OTTHUMT00000478005.1" ; hgnc_id "HGNC:14579" ; level 2 ; orig_coord_info "chr1,150068645,150068764,+" ; protein_id "ENSP00000358124.5" ; tag basic CCDS ; transcript_id "CGN--VPS45^ENST00000369128.9" ; transcript_name "VPS45-201" ; transcript_support_level 2 ; transcript_type protein_coding
CGN--VPS45 HAVANA mRNA 23194 40315 . + . FI_gene_label "VPS45^ENSG00000136631.15" ; ID "CGN--VPS45^ENST00000369128.9" ; Parent "CGN--VPS45^VPS45^ENSG00000136631.15" ; ccdsid "CCDS60244.1" ; exon_id "ENSE00003726336.1" ; exon_number 2 ; gene_id "CGN--VPS45^VPS45^ENSG00000136631.15" ; gene_name VPS45 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012511.10" ; havana_transcript "OTTHUMT00000478005.1" ; hgnc_id "HGNC:14579" ; level 2 ; orig_coord_info "chr1,150068645,150068764,+" ; protein_id "ENSP00000358124.5" ; tag basic CCDS ; transcript_id "CGN--VPS45^ENST00000369128.9" ; transcript_name "VPS45-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
CLN6--AL135790.1 HAVANA gene 3665 14344 . + . FI_gene_label "CLN6^ENSG00000128973.13" ; ID "CLN6--AL135790.1^CLN6^ENSG00000128973.13" ; ccdsid "CCDS10227.1" ; exon_id "ENSE00003792380.2" ; exon_number 1 ; gene_id "CLN6--AL135790.1^CLN6^ENSG00000128973.13" ; gene_name CLN6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133286.7" ; havana_transcript "OTTHUMT00000257066.3" ; hgnc_id "HGNC:2077" ; level 2 ; orig_coord_info "chr15,68229502,68229584,-" ; protein_id "ENSP00000249806.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CLN6--AL135790.1^ENST00000249806.11" ; transcript_name "CLN6-201" ; transcript_support_level 1 ; transcript_type protein_coding
CLN6--AL135790.1 HAVANA mRNA 3665 14344 . + . FI_gene_label "CLN6^ENSG00000128973.13" ; ID "CLN6--AL135790.1^ENST00000249806.11" ; Parent "CLN6--AL135790.1^CLN6^ENSG00000128973.13" ; ccdsid "CCDS10227.1" ; exon_id "ENSE00003792380.2" ; exon_number 1 ; gene_id "CLN6--AL135790.1^CLN6^ENSG00000128973.13" ; gene_name CLN6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133286.7" ; havana_transcript "OTTHUMT00000257066.3" ; hgnc_id "HGNC:2077" ; level 2 ; orig_coord_info "chr15,68229502,68229584,-" ; protein_id "ENSP00000249806.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CLN6--AL135790.1^ENST00000249806.11" ; transcript_name "CLN6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CLN6--AL161788.1 HAVANA gene 3665 14344 . + . FI_gene_label "CLN6^ENSG00000128973.13" ; ID "CLN6--AL161788.1^CLN6^ENSG00000128973.13" ; ccdsid "CCDS10227.1" ; exon_id "ENSE00003792380.2" ; exon_number 1 ; gene_id "CLN6--AL161788.1^CLN6^ENSG00000128973.13" ; gene_name CLN6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133286.7" ; havana_transcript "OTTHUMT00000257066.3" ; hgnc_id "HGNC:2077" ; level 2 ; orig_coord_info "chr15,68229502,68229584,-" ; protein_id "ENSP00000249806.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CLN6--AL161788.1^ENST00000249806.11" ; transcript_name "CLN6-201" ; transcript_support_level 1 ; transcript_type protein_coding
CLN6--AL161788.1 HAVANA mRNA 3665 14344 . + . FI_gene_label "CLN6^ENSG00000128973.13" ; ID "CLN6--AL161788.1^ENST00000249806.11" ; Parent "CLN6--AL161788.1^CLN6^ENSG00000128973.13" ; ccdsid "CCDS10227.1" ; exon_id "ENSE00003792380.2" ; exon_number 1 ; gene_id "CLN6--AL161788.1^CLN6^ENSG00000128973.13" ; gene_name CLN6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133286.7" ; havana_transcript "OTTHUMT00000257066.3" ; hgnc_id "HGNC:2077" ; level 2 ; orig_coord_info "chr15,68229502,68229584,-" ; protein_id "ENSP00000249806.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CLN6--AL161788.1^ENST00000249806.11" ; transcript_name "CLN6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CLN6--CLCN3P1 HAVANA gene 3665 14344 . + . FI_gene_label "CLN6^ENSG00000128973.13" ; ID "CLN6--CLCN3P1^CLN6^ENSG00000128973.13" ; ccdsid "CCDS10227.1" ; exon_id "ENSE00003792380.2" ; exon_number 1 ; gene_id "CLN6--CLCN3P1^CLN6^ENSG00000128973.13" ; gene_name CLN6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133286.7" ; havana_transcript "OTTHUMT00000257066.3" ; hgnc_id "HGNC:2077" ; level 2 ; orig_coord_info "chr15,68229502,68229584,-" ; protein_id "ENSP00000249806.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CLN6--CLCN3P1^ENST00000249806.11" ; transcript_name "CLN6-201" ; transcript_support_level 1 ; transcript_type protein_coding
CLN6--CLCN3P1 HAVANA mRNA 3665 14344 . + . FI_gene_label "CLN6^ENSG00000128973.13" ; ID "CLN6--CLCN3P1^ENST00000249806.11" ; Parent "CLN6--CLCN3P1^CLN6^ENSG00000128973.13" ; ccdsid "CCDS10227.1" ; exon_id "ENSE00003792380.2" ; exon_number 1 ; gene_id "CLN6--CLCN3P1^CLN6^ENSG00000128973.13" ; gene_name CLN6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133286.7" ; havana_transcript "OTTHUMT00000257066.3" ; hgnc_id "HGNC:2077" ; level 2 ; orig_coord_info "chr15,68229502,68229584,-" ; protein_id "ENSP00000249806.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CLN6--CLCN3P1^ENST00000249806.11" ; transcript_name "CLN6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
COBL--GLI3 HAVANA gene 1010 32470 . + . FI_gene_label "COBL^ENSG00000106078.19" ; ID "COBL--GLI3^COBL^ENSG00000106078.19" ; ccdsid "CCDS34637.1" ; exon_id "ENSE00001957186.2" ; exon_number 1 ; gene_id "COBL--GLI3^COBL^ENSG00000106078.19" ; gene_name COBL ; gene_type protein_coding ; havana_gene "OTTHUMG00000155999.7" ; havana_transcript "OTTHUMT00000342682.2" ; hgnc_id "HGNC:22199" ; level 2 ; orig_coord_info "chr7,51316593,51316633,-" ; protein_id "ENSP00000265136.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "COBL--GLI3^ENST00000265136.12" ; transcript_name "COBL-201" ; transcript_support_level 1 ; transcript_type protein_coding
COBL--GLI3 HAVANA mRNA 1010 32470 . + . FI_gene_label "COBL^ENSG00000106078.19" ; ID "COBL--GLI3^ENST00000265136.12" ; Parent "COBL--GLI3^COBL^ENSG00000106078.19" ; ccdsid "CCDS34637.1" ; exon_id "ENSE00001957186.2" ; exon_number 1 ; gene_id "COBL--GLI3^COBL^ENSG00000106078.19" ; gene_name COBL ; gene_type protein_coding ; havana_gene "OTTHUMG00000155999.7" ; havana_transcript "OTTHUMT00000342682.2" ; hgnc_id "HGNC:22199" ; level 2 ; orig_coord_info "chr7,51316593,51316633,-" ; protein_id "ENSP00000265136.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "COBL--GLI3^ENST00000265136.12" ; transcript_name "COBL-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
COBL--GLI3 HAVANA gene 37239 71827 . + . FI_gene_label "GLI3^ENSG00000106571.15" ; ID "COBL--GLI3^GLI3^ENSG00000106571.15" ; ccdsid "CCDS5465.1" ; exon_id "ENSE00001523285.1" ; exon_number 2 ; gene_id "COBL--GLI3^GLI3^ENSG00000106571.15" ; gene_name GLI3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000023630.8" ; havana_transcript "OTTHUMT00000250806.4" ; hgnc_id "HGNC:4319" ; level 2 ; orig_coord_info "chr7,42223130,42223253,-" ; protein_id "ENSP00000379258.3" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "COBL--GLI3^ENST00000395925.8" ; transcript_name "GLI3-201" ; transcript_support_level 5 ; transcript_type protein_coding
COBL--GLI3 HAVANA mRNA 37239 71827 . + . FI_gene_label "GLI3^ENSG00000106571.15" ; ID "COBL--GLI3^ENST00000395925.8" ; Parent "COBL--GLI3^GLI3^ENSG00000106571.15" ; ccdsid "CCDS5465.1" ; exon_id "ENSE00001523285.1" ; exon_number 2 ; gene_id "COBL--GLI3^GLI3^ENSG00000106571.15" ; gene_name GLI3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000023630.8" ; havana_transcript "OTTHUMT00000250806.4" ; hgnc_id "HGNC:4319" ; level 2 ; orig_coord_info "chr7,42223130,42223253,-" ; protein_id "ENSP00000379258.3" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "COBL--GLI3^ENST00000395925.8" ; transcript_name "GLI3-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
CRYZL2P--SEC16B HAVANA gene 18631 44079 . + . FI_gene_label "SEC16B^ENSG00000120341.18" ; ID "CRYZL2P--SEC16B^SEC16B^ENSG00000120341.18" ; ccdsid "CCDS44281.1" ; exon_id "ENSE00003707644.1" ; exon_number 2 ; gene_id "CRYZL2P--SEC16B^SEC16B^ENSG00000120341.18" ; gene_name SEC16B ; gene_type protein_coding ; havana_gene "OTTHUMG00000167206.20" ; havana_transcript "OTTHUMT00000084773.22" ; hgnc_id "HGNC:30301" ; level 2 ; orig_coord_info "chr1,177967683,177967981,-" ; protein_id "ENSP00000308339.6" ; tag basic appris_principal_2 CCDS ; transcript_id "CRYZL2P--SEC16B^ENST00000308284.10" ; transcript_name "SEC16B-201" ; transcript_support_level 1 ; transcript_type protein_coding
CRYZL2P--SEC16B HAVANA mRNA 18631 44079 . + . FI_gene_label "SEC16B^ENSG00000120341.18" ; ID "CRYZL2P--SEC16B^ENST00000308284.10" ; Parent "CRYZL2P--SEC16B^SEC16B^ENSG00000120341.18" ; ccdsid "CCDS44281.1" ; exon_id "ENSE00003707644.1" ; exon_number 2 ; gene_id "CRYZL2P--SEC16B^SEC16B^ENSG00000120341.18" ; gene_name SEC16B ; gene_type protein_coding ; havana_gene "OTTHUMG00000167206.20" ; havana_transcript "OTTHUMT00000084773.22" ; hgnc_id "HGNC:30301" ; level 2 ; orig_coord_info "chr1,177967683,177967981,-" ; protein_id "ENSP00000308339.6" ; tag basic appris_principal_2 CCDS ; transcript_id "CRYZL2P--SEC16B^ENST00000308284.10" ; transcript_name "SEC16B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DYSF--PPP1CB HAVANA gene 1001 58856 . + . FI_gene_label "DYSF^ENSG00000135636.14" ; ID "DYSF--PPP1CB^DYSF^ENSG00000135636.14" ; ccdsid "CCDS1918.1" ; exon_id "ENSE00001582292.1" ; exon_number 1 ; gene_id "DYSF--PPP1CB^DYSF^ENSG00000135636.14" ; gene_name DYSF ; gene_type protein_coding ; havana_gene "OTTHUMG00000129757.9" ; havana_transcript "OTTHUMT00000251970.3" ; hgnc_id "HGNC:3097" ; level 2 ; orig_coord_info "chr2,71453999,71454086,+" ; protein_id "ENSP00000258104.3" ; tag basic appris_alternative_1 CCDS ; transcript_id "DYSF--PPP1CB^ENST00000258104.7" ; transcript_name "DYSF-201" ; transcript_support_level 1 ; transcript_type protein_coding
DYSF--PPP1CB HAVANA mRNA 1001 58856 . + . FI_gene_label "DYSF^ENSG00000135636.14" ; ID "DYSF--PPP1CB^ENST00000258104.7" ; Parent "DYSF--PPP1CB^DYSF^ENSG00000135636.14" ; ccdsid "CCDS1918.1" ; exon_id "ENSE00001582292.1" ; exon_number 1 ; gene_id "DYSF--PPP1CB^DYSF^ENSG00000135636.14" ; gene_name DYSF ; gene_type protein_coding ; havana_gene "OTTHUMG00000129757.9" ; havana_transcript "OTTHUMT00000251970.3" ; hgnc_id "HGNC:3097" ; level 2 ; orig_coord_info "chr2,71453999,71454086,+" ; protein_id "ENSP00000258104.3" ; tag basic appris_alternative_1 CCDS ; transcript_id "DYSF--PPP1CB^ENST00000258104.7" ; transcript_name "DYSF-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DYSF--PPP1CB HAVANA gene 62031 73543 . + . FI_gene_label "PPP1CB^ENSG00000213639.10" ; ID "DYSF--PPP1CB^PPP1CB^ENSG00000213639.10" ; ccdsid "CCDS33169.1" ; exon_id "ENSE00001754926.1" ; exon_number 2 ; gene_id "DYSF--PPP1CB^PPP1CB^ENSG00000213639.10" ; gene_name PPP1CB ; gene_type protein_coding ; havana_gene "OTTHUMG00000152011.6" ; havana_transcript "OTTHUMT00000324843.1" ; hgnc_id "HGNC:9282" ; level 2 ; orig_coord_info "chr2,28752125,28752176,+" ; protein_id "ENSP00000296122.6" ; tag basic appris_principal_1 CCDS ; transcript_id "DYSF--PPP1CB^ENST00000296122.10" ; transcript_name "PPP1CB-201" ; transcript_support_level 1 ; transcript_type protein_coding
DYSF--PPP1CB HAVANA mRNA 62031 73543 . + . FI_gene_label "PPP1CB^ENSG00000213639.10" ; ID "DYSF--PPP1CB^ENST00000296122.10" ; Parent "DYSF--PPP1CB^PPP1CB^ENSG00000213639.10" ; ccdsid "CCDS33169.1" ; exon_id "ENSE00001754926.1" ; exon_number 2 ; gene_id "DYSF--PPP1CB^PPP1CB^ENSG00000213639.10" ; gene_name PPP1CB ; gene_type protein_coding ; havana_gene "OTTHUMG00000152011.6" ; havana_transcript "OTTHUMT00000324843.1" ; hgnc_id "HGNC:9282" ; level 2 ; orig_coord_info "chr2,28752125,28752176,+" ; protein_id "ENSP00000296122.6" ; tag basic appris_principal_1 CCDS ; transcript_id "DYSF--PPP1CB^ENST00000296122.10" ; transcript_name "PPP1CB-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ETFA--RBPMS2 HAVANA gene 1025 19332 . + . FI_gene_label "ETFA^ENSG00000140374.16" ; ID "ETFA--RBPMS2^ETFA^ENSG00000140374.16" ; exon_id "ENSE00002559305.1" ; exon_number 1 ; gene_id "ETFA--RBPMS2^ETFA^ENSG00000140374.16" ; gene_name ETFA ; gene_type protein_coding ; havana_gene "OTTHUMG00000172586.7" ; havana_transcript "OTTHUMT00000419485.1" ; hgnc_id "HGNC:3481" ; level 2 ; orig_coord_info "chr15,76311350,76311388,-" ; protein_id "ENSP00000267950.8" ; transcript_id "ETFA--RBPMS2^ENST00000267950.12" ; transcript_name "ETFA-201" ; transcript_support_level 5 ; transcript_type nonsense_mediated_decay
ETFA--RBPMS2 HAVANA mRNA 1025 19332 . + . FI_gene_label "ETFA^ENSG00000140374.16" ; ID "ETFA--RBPMS2^ENST00000267950.12" ; Parent "ETFA--RBPMS2^ETFA^ENSG00000140374.16" ; exon_id "ENSE00002559305.1" ; exon_number 1 ; gene_id "ETFA--RBPMS2^ETFA^ENSG00000140374.16" ; gene_name ETFA ; gene_type protein_coding ; havana_gene "OTTHUMG00000172586.7" ; havana_transcript "OTTHUMT00000419485.1" ; hgnc_id "HGNC:3481" ; level 2 ; orig_coord_info "chr15,76311350,76311388,-" ; protein_id "ENSP00000267950.8" ; transcript_id "ETFA--RBPMS2^ENST00000267950.12" ; transcript_name "ETFA-201" ; transcript_support_level 5 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
ETFA--RBPMS2 HAVANA gene 23230 31066 . + . FI_gene_label "RBPMS2^ENSG00000166831.9" ; ID "ETFA--RBPMS2^RBPMS2^ENSG00000166831.9" ; ccdsid "CCDS32271.1" ; exon_id "ENSE00001303912.5" ; exon_number 1 ; gene_id "ETFA--RBPMS2^RBPMS2^ENSG00000166831.9" ; gene_name RBPMS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172423.3" ; havana_transcript "OTTHUMT00000418466.2" ; hgnc_id "HGNC:19098" ; level 2 ; orig_coord_info "chr15,64775233,64775319,-" ; protein_id "ENSP00000300069.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ETFA--RBPMS2^ENST00000300069.5" ; transcript_name "RBPMS2-201" ; transcript_support_level 1 ; transcript_type protein_coding
ETFA--RBPMS2 HAVANA mRNA 23230 31066 . + . FI_gene_label "RBPMS2^ENSG00000166831.9" ; ID "ETFA--RBPMS2^ENST00000300069.5" ; Parent "ETFA--RBPMS2^RBPMS2^ENSG00000166831.9" ; ccdsid "CCDS32271.1" ; exon_id "ENSE00001303912.5" ; exon_number 1 ; gene_id "ETFA--RBPMS2^RBPMS2^ENSG00000166831.9" ; gene_name RBPMS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172423.3" ; havana_transcript "OTTHUMT00000418466.2" ; hgnc_id "HGNC:19098" ; level 2 ; orig_coord_info "chr15,64775233,64775319,-" ; protein_id "ENSP00000300069.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ETFA--RBPMS2^ENST00000300069.5" ; transcript_name "RBPMS2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
EXOC6B--CLIC3 HAVANA gene 1009 34110 . + . FI_gene_label "EXOC6B^ENSG00000144036.16" ; ID "EXOC6B--CLIC3^EXOC6B^ENSG00000144036.16" ; ccdsid "CCDS46333.1" ; exon_id "ENSE00000000137.2" ; exon_number 1 ; gene_id "EXOC6B--CLIC3^EXOC6B^ENSG00000144036.16" ; gene_name EXOC6B ; gene_type protein_coding ; havana_gene "OTTHUMG00000152723.3" ; havana_transcript "OTTHUMT00000327558.1" ; hgnc_id "HGNC:17085" ; level 2 ; orig_coord_info "chr2,72825798,72825910,-" ; protein_id "ENSP00000272427.7" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "EXOC6B--CLIC3^ENST00000272427.11" ; transcript_name "EXOC6B-201" ; transcript_support_level 1 ; transcript_type protein_coding
EXOC6B--CLIC3 HAVANA mRNA 1009 34110 . + . FI_gene_label "EXOC6B^ENSG00000144036.16" ; ID "EXOC6B--CLIC3^ENST00000272427.11" ; Parent "EXOC6B--CLIC3^EXOC6B^ENSG00000144036.16" ; ccdsid "CCDS46333.1" ; exon_id "ENSE00000000137.2" ; exon_number 1 ; gene_id "EXOC6B--CLIC3^EXOC6B^ENSG00000144036.16" ; gene_name EXOC6B ; gene_type protein_coding ; havana_gene "OTTHUMG00000152723.3" ; havana_transcript "OTTHUMT00000327558.1" ; hgnc_id "HGNC:17085" ; level 2 ; orig_coord_info "chr2,72825798,72825910,-" ; protein_id "ENSP00000272427.7" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "EXOC6B--CLIC3^ENST00000272427.11" ; transcript_name "EXOC6B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
EXOC6B--CLIC3 HAVANA gene 37111 39071 . + . FI_gene_label "CLIC3^ENSG00000169583.13" ; ID "EXOC6B--CLIC3^CLIC3^ENSG00000169583.13" ; ccdsid "CCDS7021.1" ; exon_id "ENSE00001897231.2" ; exon_number 1 ; gene_id "EXOC6B--CLIC3^CLIC3^ENSG00000169583.13" ; gene_name CLIC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020954.4" ; havana_transcript "OTTHUMT00000055173.3" ; hgnc_id "HGNC:2064" ; level 2 ; orig_coord_info "chr9,136996511,136996543,-" ; protein_id "ENSP00000419378.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "EXOC6B--CLIC3^ENST00000494426.2" ; transcript_name "CLIC3-203" ; transcript_support_level 1 ; transcript_type protein_coding
EXOC6B--CLIC3 HAVANA mRNA 37111 39071 . + . FI_gene_label "CLIC3^ENSG00000169583.13" ; ID "EXOC6B--CLIC3^ENST00000494426.2" ; Parent "EXOC6B--CLIC3^CLIC3^ENSG00000169583.13" ; ccdsid "CCDS7021.1" ; exon_id "ENSE00001897231.2" ; exon_number 1 ; gene_id "EXOC6B--CLIC3^CLIC3^ENSG00000169583.13" ; gene_name CLIC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020954.4" ; havana_transcript "OTTHUMT00000055173.3" ; hgnc_id "HGNC:2064" ; level 2 ; orig_coord_info "chr9,136996511,136996543,-" ; protein_id "ENSP00000419378.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "EXOC6B--CLIC3^ENST00000494426.2" ; transcript_name "CLIC3-203" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FAM126B--CFLAR HAVANA gene 1007 22514 . + . FI_gene_label "FAM126B^ENSG00000155744.9" ; ID "FAM126B--CFLAR^FAM126B^ENSG00000155744.9" ; exon_id "ENSE00003588801.1" ; exon_number 3 ; gene_id "FAM126B--CFLAR^FAM126B^ENSG00000155744.9" ; gene_name FAM126B ; gene_type protein_coding ; havana_gene "OTTHUMG00000132823.15" ; havana_transcript "OTTHUMT00000336581.1" ; hgnc_id "HGNC:28593" ; level 2 ; orig_coord_info "chr2,201023959,201024009,-" ; protein_id "ENSP00000286181.3" ; transcript_id "FAM126B--CFLAR^ENST00000286181.7" ; transcript_name "FAM126B-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
FAM126B--CFLAR HAVANA mRNA 1007 22514 . + . FI_gene_label "FAM126B^ENSG00000155744.9" ; ID "FAM126B--CFLAR^ENST00000286181.7" ; Parent "FAM126B--CFLAR^FAM126B^ENSG00000155744.9" ; exon_id "ENSE00003588801.1" ; exon_number 3 ; gene_id "FAM126B--CFLAR^FAM126B^ENSG00000155744.9" ; gene_name FAM126B ; gene_type protein_coding ; havana_gene "OTTHUMG00000132823.15" ; havana_transcript "OTTHUMT00000336581.1" ; hgnc_id "HGNC:28593" ; level 2 ; orig_coord_info "chr2,201023959,201024009,-" ; protein_id "ENSP00000286181.3" ; transcript_id "FAM126B--CFLAR^ENST00000286181.7" ; transcript_name "FAM126B-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
FAM126B--CFLAR HAVANA gene 30300 66263 . + . FI_gene_label "CFLAR^ENSG00000003402.20" ; ID "FAM126B--CFLAR^CFLAR^ENSG00000003402.20" ; ccdsid "CCDS2337.1" ; exon_id "ENSE00002684918.1" ; exon_number 2 ; gene_id "FAM126B--CFLAR^CFLAR^ENSG00000003402.20" ; gene_name CFLAR ; gene_type protein_coding ; havana_gene "OTTHUMG00000132819.20" ; havana_transcript "OTTHUMT00000256276.4" ; hgnc_id "HGNC:1876" ; level 2 ; orig_coord_info "chr2,201129866,201130146,+" ; protein_id "ENSP00000312455.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FAM126B--CFLAR^ENST00000309955.8" ; transcript_name "CFLAR-201" ; transcript_support_level 1 ; transcript_type protein_coding
FAM126B--CFLAR HAVANA mRNA 30300 66263 . + . FI_gene_label "CFLAR^ENSG00000003402.20" ; ID "FAM126B--CFLAR^ENST00000309955.8" ; Parent "FAM126B--CFLAR^CFLAR^ENSG00000003402.20" ; ccdsid "CCDS2337.1" ; exon_id "ENSE00002684918.1" ; exon_number 2 ; gene_id "FAM126B--CFLAR^CFLAR^ENSG00000003402.20" ; gene_name CFLAR ; gene_type protein_coding ; havana_gene "OTTHUMG00000132819.20" ; havana_transcript "OTTHUMT00000256276.4" ; hgnc_id "HGNC:1876" ; level 2 ; orig_coord_info "chr2,201129866,201130146,+" ; protein_id "ENSP00000312455.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FAM126B--CFLAR^ENST00000309955.8" ; transcript_name "CFLAR-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FGFR1--AC007991.3 HAVANA gene 1219 28749 . + . FI_gene_label "FGFR1^ENSG00000077782.21" ; ID "FGFR1--AC007991.3^FGFR1^ENSG00000077782.21" ; ccdsid "CCDS43731.1" ; exon_id "ENSE00003610788.1" ; exon_number 2 ; gene_id "FGFR1--AC007991.3^FGFR1^ENSG00000077782.21" ; gene_name FGFR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000147366.18" ; havana_transcript "OTTHUMT00000304017.2" ; hgnc_id "HGNC:3688" ; level 2 ; orig_coord_info "chr8,38457356,38457446,-" ; protein_id "ENSP00000327229.6" ; tag non_canonical_conserved basic CCDS ; transcript_id "FGFR1--AC007991.3^ENST00000326324.10" ; transcript_name "FGFR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
FGFR1--AC007991.3 HAVANA mRNA 1219 28749 . + . FI_gene_label "FGFR1^ENSG00000077782.21" ; ID "FGFR1--AC007991.3^ENST00000326324.10" ; Parent "FGFR1--AC007991.3^FGFR1^ENSG00000077782.21" ; ccdsid "CCDS43731.1" ; exon_id "ENSE00003610788.1" ; exon_number 2 ; gene_id "FGFR1--AC007991.3^FGFR1^ENSG00000077782.21" ; gene_name FGFR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000147366.18" ; havana_transcript "OTTHUMT00000304017.2" ; hgnc_id "HGNC:3688" ; level 2 ; orig_coord_info "chr8,38457356,38457446,-" ; protein_id "ENSP00000327229.6" ; tag non_canonical_conserved basic CCDS ; transcript_id "FGFR1--AC007991.3^ENST00000326324.10" ; transcript_name "FGFR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FGFR1--IDO2 HAVANA gene 1219 28749 . + . FI_gene_label "FGFR1^ENSG00000077782.21" ; ID "FGFR1--IDO2^FGFR1^ENSG00000077782.21" ; ccdsid "CCDS43731.1" ; exon_id "ENSE00003610788.1" ; exon_number 2 ; gene_id "FGFR1--IDO2^FGFR1^ENSG00000077782.21" ; gene_name FGFR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000147366.18" ; havana_transcript "OTTHUMT00000304017.2" ; hgnc_id "HGNC:3688" ; level 2 ; orig_coord_info "chr8,38457356,38457446,-" ; protein_id "ENSP00000327229.6" ; tag non_canonical_conserved basic CCDS ; transcript_id "FGFR1--IDO2^ENST00000326324.10" ; transcript_name "FGFR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
FGFR1--IDO2 HAVANA mRNA 1219 28749 . + . FI_gene_label "FGFR1^ENSG00000077782.21" ; ID "FGFR1--IDO2^ENST00000326324.10" ; Parent "FGFR1--IDO2^FGFR1^ENSG00000077782.21" ; ccdsid "CCDS43731.1" ; exon_id "ENSE00003610788.1" ; exon_number 2 ; gene_id "FGFR1--IDO2^FGFR1^ENSG00000077782.21" ; gene_name FGFR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000147366.18" ; havana_transcript "OTTHUMT00000304017.2" ; hgnc_id "HGNC:3688" ; level 2 ; orig_coord_info "chr8,38457356,38457446,-" ; protein_id "ENSP00000327229.6" ; tag non_canonical_conserved basic CCDS ; transcript_id "FGFR1--IDO2^ENST00000326324.10" ; transcript_name "FGFR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FGFR1--IDO2 HAVANA gene 38881 51012 . + . FI_gene_label "IDO2^ENSG00000188676.13" ; ID "FGFR1--IDO2^IDO2^ENSG00000188676.13" ; exon_id "ENSE00001793056.2" ; exon_number 1 ; gene_id "FGFR1--IDO2^IDO2^ENSG00000188676.13" ; gene_name IDO2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000141271.3" ; havana_transcript "OTTHUMT00000372742.1" ; hgnc_id "HGNC:27269" ; level 2 ; orig_coord_info "chr8,39949166,39949264,+" ; protein_id "ENSP00000426447.1" ; tag basic appris_alternative_2 ; transcript_id "FGFR1--IDO2^ENST00000389060.8" ; transcript_name "IDO2-202" ; transcript_support_level 1 ; transcript_type protein_coding
FGFR1--IDO2 HAVANA mRNA 38881 51012 . + . FI_gene_label "IDO2^ENSG00000188676.13" ; ID "FGFR1--IDO2^ENST00000389060.8" ; Parent "FGFR1--IDO2^IDO2^ENSG00000188676.13" ; exon_id "ENSE00001793056.2" ; exon_number 1 ; gene_id "FGFR1--IDO2^IDO2^ENSG00000188676.13" ; gene_name IDO2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000141271.3" ; havana_transcript "OTTHUMT00000372742.1" ; hgnc_id "HGNC:27269" ; level 2 ; orig_coord_info "chr8,39949166,39949264,+" ; protein_id "ENSP00000426447.1" ; tag basic appris_alternative_2 ; transcript_id "FGFR1--IDO2^ENST00000389060.8" ; transcript_name "IDO2-202" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GTF2IP23--FBN1 HAVANA gene 6050 76875 . + . FI_gene_label "FBN1^ENSG00000166147.14" ; ID "GTF2IP23--FBN1^FBN1^ENSG00000166147.14" ; ccdsid "CCDS32232.1" ; exon_id "ENSE00002704173.1" ; exon_number 2 ; gene_id "GTF2IP23--FBN1^FBN1^ENSG00000166147.14" ; gene_name FBN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172218.3" ; havana_transcript "OTTHUMT00000417355.3" ; hgnc_id "HGNC:3603" ; level 2 ; orig_coord_info "chr15,48644606,48644769,-" ; protein_id "ENSP00000325527.5" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 CCDS ; transcript_id "GTF2IP23--FBN1^ENST00000316623.10" ; transcript_name "FBN1-201" ; transcript_support_level 1 ; transcript_type protein_coding
GTF2IP23--FBN1 HAVANA mRNA 6050 76875 . + . FI_gene_label "FBN1^ENSG00000166147.14" ; ID "GTF2IP23--FBN1^ENST00000316623.10" ; Parent "GTF2IP23--FBN1^FBN1^ENSG00000166147.14" ; ccdsid "CCDS32232.1" ; exon_id "ENSE00002704173.1" ; exon_number 2 ; gene_id "GTF2IP23--FBN1^FBN1^ENSG00000166147.14" ; gene_name FBN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172218.3" ; havana_transcript "OTTHUMT00000417355.3" ; hgnc_id "HGNC:3603" ; level 2 ; orig_coord_info "chr15,48644606,48644769,-" ; protein_id "ENSP00000325527.5" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 CCDS ; transcript_id "GTF2IP23--FBN1^ENST00000316623.10" ; transcript_name "FBN1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
IL16--ZNF609 HAVANA gene 6151 29603 . + . FI_gene_label "IL16^ENSG00000172349.17" ; ID "IL16--ZNF609^IL16^ENSG00000172349.17" ; ccdsid "CCDS42069.1" ; exon_id "ENSE00001519131.1" ; exon_number 1 ; gene_id "IL16--ZNF609^IL16^ENSG00000172349.17" ; gene_name IL16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000144186.9" ; havana_transcript "OTTHUMT00000303952.2" ; hgnc_id "HGNC:5980" ; level 2 ; orig_coord_info "chr15,81225400,81225711,+" ; protein_id "ENSP00000302935.4" ; tag basic appris_principal_4 CCDS ; transcript_id "IL16--ZNF609^ENST00000302987.8" ; transcript_name "IL16-201" ; transcript_support_level 1 ; transcript_type protein_coding
IL16--ZNF609 HAVANA mRNA 6151 29603 . + . FI_gene_label "IL16^ENSG00000172349.17" ; ID "IL16--ZNF609^ENST00000302987.8" ; Parent "IL16--ZNF609^IL16^ENSG00000172349.17" ; ccdsid "CCDS42069.1" ; exon_id "ENSE00001519131.1" ; exon_number 1 ; gene_id "IL16--ZNF609^IL16^ENSG00000172349.17" ; gene_name IL16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000144186.9" ; havana_transcript "OTTHUMT00000303952.2" ; hgnc_id "HGNC:5980" ; level 2 ; orig_coord_info "chr15,81225400,81225711,+" ; protein_id "ENSP00000302935.4" ; tag basic appris_principal_4 CCDS ; transcript_id "IL16--ZNF609^ENST00000302987.8" ; transcript_name "IL16-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
IL16--ZNF609 HAVANA gene 38961 59010 . + . FI_gene_label "ZNF609^ENSG00000180357.9" ; ID "IL16--ZNF609^ZNF609^ENSG00000180357.9" ; ccdsid "CCDS32270.1" ; exon_id "ENSE00001484308.2" ; exon_number 1 ; gene_id "IL16--ZNF609^ZNF609^ENSG00000180357.9" ; gene_name ZNF609 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172370.6" ; havana_transcript "OTTHUMT00000418130.2" ; hgnc_id "HGNC:29003" ; level 2 ; orig_coord_info "chr15,64499420,64500166,+" ; protein_id "ENSP00000316527.3" ; tag basic appris_principal_1 CCDS ; transcript_id "IL16--ZNF609^ENST00000326648.4" ; transcript_name "ZNF609-201" ; transcript_support_level 5 ; transcript_type protein_coding
IL16--ZNF609 HAVANA mRNA 38961 59010 . + . FI_gene_label "ZNF609^ENSG00000180357.9" ; ID "IL16--ZNF609^ENST00000326648.4" ; Parent "IL16--ZNF609^ZNF609^ENSG00000180357.9" ; ccdsid "CCDS32270.1" ; exon_id "ENSE00001484308.2" ; exon_number 1 ; gene_id "IL16--ZNF609^ZNF609^ENSG00000180357.9" ; gene_name ZNF609 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172370.6" ; havana_transcript "OTTHUMT00000418130.2" ; hgnc_id "HGNC:29003" ; level 2 ; orig_coord_info "chr15,64499420,64500166,+" ; protein_id "ENSP00000316527.3" ; tag basic appris_principal_1 CCDS ; transcript_id "IL16--ZNF609^ENST00000326648.4" ; transcript_name "ZNF609-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
IQCH-AS1--ADAM10 HAVANA gene 24821 59158 . + . FI_gene_label "ADAM10^ENSG00000137845.15" ; ID "IQCH-AS1--ADAM10^ADAM10^ENSG00000137845.15" ; ccdsid "CCDS10167.1" ; exon_id "ENSE00002542201.1" ; exon_number 1 ; gene_id "IQCH-AS1--ADAM10^ADAM10^ENSG00000137845.15" ; gene_name ADAM10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132633.11" ; havana_transcript "OTTHUMT00000255880.4" ; hgnc_id "HGNC:188" ; level 2 ; orig_coord_info "chr15,58749480,58749534,-" ; protein_id "ENSP00000260408.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "IQCH-AS1--ADAM10^ENST00000260408.8" ; transcript_name "ADAM10-201" ; transcript_support_level 1 ; transcript_type protein_coding
IQCH-AS1--ADAM10 HAVANA mRNA 24821 59158 . + . FI_gene_label "ADAM10^ENSG00000137845.15" ; ID "IQCH-AS1--ADAM10^ENST00000260408.8" ; Parent "IQCH-AS1--ADAM10^ADAM10^ENSG00000137845.15" ; ccdsid "CCDS10167.1" ; exon_id "ENSE00002542201.1" ; exon_number 1 ; gene_id "IQCH-AS1--ADAM10^ADAM10^ENSG00000137845.15" ; gene_name ADAM10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132633.11" ; havana_transcript "OTTHUMT00000255880.4" ; hgnc_id "HGNC:188" ; level 2 ; orig_coord_info "chr15,58749480,58749534,-" ; protein_id "ENSP00000260408.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "IQCH-AS1--ADAM10^ENST00000260408.8" ; transcript_name "ADAM10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
JAK2--HIVEP1 HAVANA gene 33373 54213 . + . FI_gene_label "HIVEP1^ENSG00000095951.17" ; ID "JAK2--HIVEP1^HIVEP1^ENSG00000095951.17" ; ccdsid "CCDS43426.1" ; exon_id "ENSE00003663871.1" ; exon_number 2 ; gene_id "JAK2--HIVEP1^HIVEP1^ENSG00000095951.17" ; gene_name HIVEP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014265.5" ; havana_transcript "OTTHUMT00000039870.4" ; hgnc_id "HGNC:4920" ; level 2 ; orig_coord_info "chr6,12015629,12015668,+" ; protein_id "ENSP00000368698.2" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "JAK2--HIVEP1^ENST00000379388.7" ; transcript_name "HIVEP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
JAK2--HIVEP1 HAVANA mRNA 33373 54213 . + . FI_gene_label "HIVEP1^ENSG00000095951.17" ; ID "JAK2--HIVEP1^ENST00000379388.7" ; Parent "JAK2--HIVEP1^HIVEP1^ENSG00000095951.17" ; ccdsid "CCDS43426.1" ; exon_id "ENSE00003663871.1" ; exon_number 2 ; gene_id "JAK2--HIVEP1^HIVEP1^ENSG00000095951.17" ; gene_name HIVEP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014265.5" ; havana_transcript "OTTHUMT00000039870.4" ; hgnc_id "HGNC:4920" ; level 2 ; orig_coord_info "chr6,12015629,12015668,+" ; protein_id "ENSP00000368698.2" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "JAK2--HIVEP1^ENST00000379388.7" ; transcript_name "HIVEP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
JAK2--HIVEP1 HAVANA gene 1883 28946 . + . FI_gene_label "JAK2^ENSG00000096968.14" ; ID "JAK2--HIVEP1^JAK2^ENSG00000096968.14" ; ccdsid "CCDS6457.1" ; exon_id "ENSE00001489453.1" ; exon_number 3 ; gene_id "JAK2--HIVEP1^JAK2^ENSG00000096968.14" ; gene_name JAK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019490.2" ; havana_transcript "OTTHUMT00000051609.1" ; hgnc_id "HGNC:6192" ; level 2 ; orig_coord_info "chr9,5021988,5022213,+" ; protein_id "ENSP00000371067.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "JAK2--HIVEP1^ENST00000381652.4" ; transcript_name "JAK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
JAK2--HIVEP1 HAVANA mRNA 1883 28946 . + . FI_gene_label "JAK2^ENSG00000096968.14" ; ID "JAK2--HIVEP1^ENST00000381652.4" ; Parent "JAK2--HIVEP1^JAK2^ENSG00000096968.14" ; ccdsid "CCDS6457.1" ; exon_id "ENSE00001489453.1" ; exon_number 3 ; gene_id "JAK2--HIVEP1^JAK2^ENSG00000096968.14" ; gene_name JAK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019490.2" ; havana_transcript "OTTHUMT00000051609.1" ; hgnc_id "HGNC:6192" ; level 2 ; orig_coord_info "chr9,5021988,5022213,+" ; protein_id "ENSP00000371067.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "JAK2--HIVEP1^ENST00000381652.4" ; transcript_name "JAK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
JARID2--HULC HAVANA gene 1001 23353 . + . FI_gene_label "JARID2^ENSG00000008083.14" ; ID "JARID2--HULC^JARID2^ENSG00000008083.14" ; ccdsid "CCDS4533.1" ; exon_id "ENSE00001419642.2" ; exon_number 1 ; gene_id "JARID2--HULC^JARID2^ENSG00000008083.14" ; gene_name JARID2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014293.2" ; havana_transcript "OTTHUMT00000039926.2" ; hgnc_id "HGNC:6196" ; level 2 ; orig_coord_info "chr6,15246540,15246584,+" ; protein_id "ENSP00000341280.2" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "JARID2--HULC^ENST00000341776.7" ; transcript_name "JARID2-201" ; transcript_support_level 1 ; transcript_type protein_coding
JARID2--HULC HAVANA mRNA 1001 23353 . + . FI_gene_label "JARID2^ENSG00000008083.14" ; ID "JARID2--HULC^ENST00000341776.7" ; Parent "JARID2--HULC^JARID2^ENSG00000008083.14" ; ccdsid "CCDS4533.1" ; exon_id "ENSE00001419642.2" ; exon_number 1 ; gene_id "JARID2--HULC^JARID2^ENSG00000008083.14" ; gene_name JARID2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014293.2" ; havana_transcript "OTTHUMT00000039926.2" ; hgnc_id "HGNC:6196" ; level 2 ; orig_coord_info "chr6,15246540,15246584,+" ; protein_id "ENSP00000341280.2" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "JARID2--HULC^ENST00000341776.7" ; transcript_name "JARID2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KDM2A--GRK2 HAVANA gene 35177 46756 . + . FI_gene_label "GRK2^ENSG00000173020.11" ; ID "KDM2A--GRK2^GRK2^ENSG00000173020.11" ; ccdsid "CCDS8156.1" ; exon_id "ENSE00001356365.6" ; exon_number 1 ; gene_id "KDM2A--GRK2^GRK2^ENSG00000173020.11" ; gene_name GRK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167104.2" ; havana_transcript "OTTHUMT00000393153.2" ; hgnc_id "HGNC:289" ; level 2 ; orig_coord_info "chr11,67266700,67266812,+" ; protein_id "ENSP00000312262.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KDM2A--GRK2^ENST00000308595.10" ; transcript_name "GRK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
KDM2A--GRK2 HAVANA mRNA 35177 46756 . + . FI_gene_label "GRK2^ENSG00000173020.11" ; ID "KDM2A--GRK2^ENST00000308595.10" ; Parent "KDM2A--GRK2^GRK2^ENSG00000173020.11" ; ccdsid "CCDS8156.1" ; exon_id "ENSE00001356365.6" ; exon_number 1 ; gene_id "KDM2A--GRK2^GRK2^ENSG00000173020.11" ; gene_name GRK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167104.2" ; havana_transcript "OTTHUMT00000393153.2" ; hgnc_id "HGNC:289" ; level 2 ; orig_coord_info "chr11,67266700,67266812,+" ; protein_id "ENSP00000312262.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KDM2A--GRK2^ENST00000308595.10" ; transcript_name "GRK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KDM2A--GRK2 ENSEMBL gene 2823 29156 . + . FI_gene_label "KDM2A^ENSG00000173120.15" ; ID "KDM2A--GRK2^KDM2A^ENSG00000173120.15" ; exon_id "ENSE00003741868.1" ; exon_number 3 ; gene_id "KDM2A--GRK2^KDM2A^ENSG00000173120.15" ; gene_name KDM2A ; gene_type protein_coding ; havana_gene "OTTHUMG00000167103.3" ; hgnc_id "HGNC:13606" ; level 3 ; orig_coord_info "chr11,67180088,67180217,+" ; protein_id "ENSP00000309302.6" ; tag basic ; transcript_id "KDM2A--GRK2^ENST00000308783.9" ; transcript_name "KDM2A-201" ; transcript_support_level 1 ; transcript_type protein_coding
KDM2A--GRK2 ENSEMBL mRNA 2823 29156 . + . FI_gene_label "KDM2A^ENSG00000173120.15" ; ID "KDM2A--GRK2^ENST00000308783.9" ; Parent "KDM2A--GRK2^KDM2A^ENSG00000173120.15" ; exon_id "ENSE00003741868.1" ; exon_number 3 ; gene_id "KDM2A--GRK2^KDM2A^ENSG00000173120.15" ; gene_name KDM2A ; gene_type protein_coding ; havana_gene "OTTHUMG00000167103.3" ; hgnc_id "HGNC:13606" ; level 3 ; orig_coord_info "chr11,67180088,67180217,+" ; protein_id "ENSP00000309302.6" ; tag basic ; transcript_id "KDM2A--GRK2^ENST00000308783.9" ; transcript_name "KDM2A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LCLAT1--HMGB1P25 HAVANA gene 1032 18517 . + . FI_gene_label "LCLAT1^ENSG00000172954.14" ; ID "LCLAT1--HMGB1P25^LCLAT1^ENSG00000172954.14" ; ccdsid "CCDS1772.1" ; exon_id "ENSE00003572246.1" ; exon_number 2 ; gene_id "LCLAT1--HMGB1P25^LCLAT1^ENSG00000172954.14" ; gene_name LCLAT1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000099349.7" ; havana_transcript "OTTHUMT00000216780.1" ; hgnc_id "HGNC:26756" ; level 2 ; orig_coord_info "chr2,30459613,30459722,+" ; protein_id "ENSP00000310551.4" ; tag basic CCDS ; transcript_id "LCLAT1--HMGB1P25^ENST00000309052.8" ; transcript_name "LCLAT1-201" ; transcript_support_level 1 ; transcript_type protein_coding
LCLAT1--HMGB1P25 HAVANA mRNA 1032 18517 . + . FI_gene_label "LCLAT1^ENSG00000172954.14" ; ID "LCLAT1--HMGB1P25^ENST00000309052.8" ; Parent "LCLAT1--HMGB1P25^LCLAT1^ENSG00000172954.14" ; ccdsid "CCDS1772.1" ; exon_id "ENSE00003572246.1" ; exon_number 2 ; gene_id "LCLAT1--HMGB1P25^LCLAT1^ENSG00000172954.14" ; gene_name LCLAT1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000099349.7" ; havana_transcript "OTTHUMT00000216780.1" ; hgnc_id "HGNC:26756" ; level 2 ; orig_coord_info "chr2,30459613,30459722,+" ; protein_id "ENSP00000310551.4" ; tag basic CCDS ; transcript_id "LCLAT1--HMGB1P25^ENST00000309052.8" ; transcript_name "LCLAT1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LCLAT1--RPL30P3 HAVANA gene 1032 18517 . + . FI_gene_label "LCLAT1^ENSG00000172954.14" ; ID "LCLAT1--RPL30P3^LCLAT1^ENSG00000172954.14" ; ccdsid "CCDS1772.1" ; exon_id "ENSE00003572246.1" ; exon_number 2 ; gene_id "LCLAT1--RPL30P3^LCLAT1^ENSG00000172954.14" ; gene_name LCLAT1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000099349.7" ; havana_transcript "OTTHUMT00000216780.1" ; hgnc_id "HGNC:26756" ; level 2 ; orig_coord_info "chr2,30459613,30459722,+" ; protein_id "ENSP00000310551.4" ; tag basic CCDS ; transcript_id "LCLAT1--RPL30P3^ENST00000309052.8" ; transcript_name "LCLAT1-201" ; transcript_support_level 1 ; transcript_type protein_coding
LCLAT1--RPL30P3 HAVANA mRNA 1032 18517 . + . FI_gene_label "LCLAT1^ENSG00000172954.14" ; ID "LCLAT1--RPL30P3^ENST00000309052.8" ; Parent "LCLAT1--RPL30P3^LCLAT1^ENSG00000172954.14" ; ccdsid "CCDS1772.1" ; exon_id "ENSE00003572246.1" ; exon_number 2 ; gene_id "LCLAT1--RPL30P3^LCLAT1^ENSG00000172954.14" ; gene_name LCLAT1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000099349.7" ; havana_transcript "OTTHUMT00000216780.1" ; hgnc_id "HGNC:26756" ; level 2 ; orig_coord_info "chr2,30459613,30459722,+" ; protein_id "ENSP00000310551.4" ; tag basic CCDS ; transcript_id "LCLAT1--RPL30P3^ENST00000309052.8" ; transcript_name "LCLAT1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LINC02852--IQCH HAVANA gene 6484 36607 . + . FI_gene_label "IQCH^ENSG00000103599.20" ; ID "LINC02852--IQCH^IQCH^ENSG00000103599.20" ; ccdsid "CCDS32273.1" ; exon_id "ENSE00001198458.5" ; exon_number 1 ; gene_id "LINC02852--IQCH^IQCH^ENSG00000103599.20" ; gene_name IQCH ; gene_type protein_coding ; havana_gene "OTTHUMG00000133231.7" ; havana_transcript "OTTHUMT00000256969.2" ; hgnc_id "HGNC:25721" ; level 2 ; orig_coord_info "chr15,67254897,67254947,+" ; protein_id "ENSP00000336861.4" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "LINC02852--IQCH^ENST00000335894.9" ; transcript_name "IQCH-201" ; transcript_support_level 1 ; transcript_type protein_coding
LINC02852--IQCH HAVANA mRNA 6484 36607 . + . FI_gene_label "IQCH^ENSG00000103599.20" ; ID "LINC02852--IQCH^ENST00000335894.9" ; Parent "LINC02852--IQCH^IQCH^ENSG00000103599.20" ; ccdsid "CCDS32273.1" ; exon_id "ENSE00001198458.5" ; exon_number 1 ; gene_id "LINC02852--IQCH^IQCH^ENSG00000103599.20" ; gene_name IQCH ; gene_type protein_coding ; havana_gene "OTTHUMG00000133231.7" ; havana_transcript "OTTHUMT00000256969.2" ; hgnc_id "HGNC:25721" ; level 2 ; orig_coord_info "chr15,67254897,67254947,+" ; protein_id "ENSP00000336861.4" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "LINC02852--IQCH^ENST00000335894.9" ; transcript_name "IQCH-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MAP2K5--SCAPER HAVANA gene 1001 32667 . + . FI_gene_label "MAP2K5^ENSG00000137764.20" ; ID "MAP2K5--SCAPER^MAP2K5^ENSG00000137764.20" ; ccdsid "CCDS10224.1" ; exon_id "ENSE00001917690.2" ; exon_number 1 ; gene_id "MAP2K5--SCAPER^MAP2K5^ENSG00000137764.20" ; gene_name MAP2K5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133264.7" ; havana_transcript "OTTHUMT00000257041.2" ; hgnc_id "HGNC:6845" ; level 2 ; orig_coord_info "chr15,67543336,67543470,+" ; protein_id "ENSP00000178640.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MAP2K5--SCAPER^ENST00000178640.10" ; transcript_name "MAP2K5-201" ; transcript_support_level 1 ; transcript_type protein_coding
MAP2K5--SCAPER HAVANA mRNA 1001 32667 . + . FI_gene_label "MAP2K5^ENSG00000137764.20" ; ID "MAP2K5--SCAPER^ENST00000178640.10" ; Parent "MAP2K5--SCAPER^MAP2K5^ENSG00000137764.20" ; ccdsid "CCDS10224.1" ; exon_id "ENSE00001917690.2" ; exon_number 1 ; gene_id "MAP2K5--SCAPER^MAP2K5^ENSG00000137764.20" ; gene_name MAP2K5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133264.7" ; havana_transcript "OTTHUMT00000257041.2" ; hgnc_id "HGNC:6845" ; level 2 ; orig_coord_info "chr15,67543336,67543470,+" ; protein_id "ENSP00000178640.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MAP2K5--SCAPER^ENST00000178640.10" ; transcript_name "MAP2K5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MAP2K5--SCAPER ENSEMBL gene 37502 83688 . + . FI_gene_label "SCAPER^ENSG00000140386.13" ; ID "MAP2K5--SCAPER^SCAPER^ENSG00000140386.13" ; ccdsid "CCDS53962.1" ; exon_id "ENSE00003624841.1" ; exon_number 1 ; gene_id "MAP2K5--SCAPER^SCAPER^ENSG00000140386.13" ; gene_name SCAPER ; gene_type protein_coding ; havana_gene "OTTHUMG00000172655.5" ; hgnc_id "HGNC:13081" ; level 3 ; orig_coord_info "chr15,76883812,76883817,-" ; protein_id "ENSP00000326924.7" ; tag basic appris_principal_2 CCDS ; transcript_id "MAP2K5--SCAPER^ENST00000324767.11" ; transcript_name "SCAPER-202" ; transcript_support_level 1 ; transcript_type protein_coding
MAP2K5--SCAPER ENSEMBL mRNA 37502 83688 . + . FI_gene_label "SCAPER^ENSG00000140386.13" ; ID "MAP2K5--SCAPER^ENST00000324767.11" ; Parent "MAP2K5--SCAPER^SCAPER^ENSG00000140386.13" ; ccdsid "CCDS53962.1" ; exon_id "ENSE00003624841.1" ; exon_number 1 ; gene_id "MAP2K5--SCAPER^SCAPER^ENSG00000140386.13" ; gene_name SCAPER ; gene_type protein_coding ; havana_gene "OTTHUMG00000172655.5" ; hgnc_id "HGNC:13081" ; level 3 ; orig_coord_info "chr15,76883812,76883817,-" ; protein_id "ENSP00000326924.7" ; tag basic appris_principal_2 CCDS ; transcript_id "MAP2K5--SCAPER^ENST00000324767.11" ; transcript_name "SCAPER-202" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MPDZ--AL353595.1 HAVANA gene 1001 53634 . + . FI_gene_label "MPDZ^ENSG00000107186.17" ; ID "MPDZ--AL353595.1^MPDZ^ENSG00000107186.17" ; ccdsid "CCDS83342.1" ; exon_id "ENSE00002297104.1" ; exon_number 2 ; gene_id "MPDZ--AL353595.1^MPDZ^ENSG00000107186.17" ; gene_name MPDZ ; gene_type protein_coding ; havana_gene "OTTHUMG00000021031.6" ; havana_transcript "OTTHUMT00000055485.3" ; hgnc_id "HGNC:7208" ; level 2 ; orig_coord_info "chr9,13250300,13250315,-" ; protein_id "ENSP00000320006.7" ; tag CAGE_supported_TSS basic MANE_Select appris_alternative_2 CCDS ; transcript_id "MPDZ--AL353595.1^ENST00000319217.12" ; transcript_name "MPDZ-202" ; transcript_support_level 5 ; transcript_type protein_coding
MPDZ--AL353595.1 HAVANA mRNA 1001 53634 . + . FI_gene_label "MPDZ^ENSG00000107186.17" ; ID "MPDZ--AL353595.1^ENST00000319217.12" ; Parent "MPDZ--AL353595.1^MPDZ^ENSG00000107186.17" ; ccdsid "CCDS83342.1" ; exon_id "ENSE00002297104.1" ; exon_number 2 ; gene_id "MPDZ--AL353595.1^MPDZ^ENSG00000107186.17" ; gene_name MPDZ ; gene_type protein_coding ; havana_gene "OTTHUMG00000021031.6" ; havana_transcript "OTTHUMT00000055485.3" ; hgnc_id "HGNC:7208" ; level 2 ; orig_coord_info "chr9,13250300,13250315,-" ; protein_id "ENSP00000320006.7" ; tag CAGE_supported_TSS basic MANE_Select appris_alternative_2 CCDS ; transcript_id "MPDZ--AL353595.1^ENST00000319217.12" ; transcript_name "MPDZ-202" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
NECTIN4--CDKAL1 HAVANA gene 12853 33334 . + . FI_gene_label "CDKAL1^ENSG00000145996.11" ; ID "NECTIN4--CDKAL1^CDKAL1^ENSG00000145996.11" ; ccdsid "CCDS4546.1" ; exon_id "ENSE00003893317.1" ; exon_number 3 ; gene_id "NECTIN4--CDKAL1^CDKAL1^ENSG00000145996.11" ; gene_name CDKAL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014340.2" ; havana_transcript "OTTHUMT00000504200.1" ; hgnc_id "HGNC:21050" ; level 2 ; orig_coord_info "chr6,20546351,20546523,+" ; protein_id "ENSP00000274695.4" ; tag RNA_Seq_supported_only basic MANE_Select appris_principal_1 CCDS ; transcript_id "NECTIN4--CDKAL1^ENST00000274695.8" ; transcript_name "CDKAL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
NECTIN4--CDKAL1 HAVANA mRNA 12853 33334 . + . FI_gene_label "CDKAL1^ENSG00000145996.11" ; ID "NECTIN4--CDKAL1^ENST00000274695.8" ; Parent "NECTIN4--CDKAL1^CDKAL1^ENSG00000145996.11" ; ccdsid "CCDS4546.1" ; exon_id "ENSE00003893317.1" ; exon_number 3 ; gene_id "NECTIN4--CDKAL1^CDKAL1^ENSG00000145996.11" ; gene_name CDKAL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014340.2" ; havana_transcript "OTTHUMT00000504200.1" ; hgnc_id "HGNC:21050" ; level 2 ; orig_coord_info "chr6,20546351,20546523,+" ; protein_id "ENSP00000274695.4" ; tag RNA_Seq_supported_only basic MANE_Select appris_principal_1 CCDS ; transcript_id "NECTIN4--CDKAL1^ENST00000274695.8" ; transcript_name "CDKAL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NECTIN4--CDKAL1 HAVANA gene 1001 9852 . + . FI_gene_label "NECTIN4^ENSG00000143217.9" ; ID "NECTIN4--CDKAL1^NECTIN4^ENSG00000143217.9" ; ccdsid "CCDS1216.1" ; exon_id "ENSE00001446126.4" ; exon_number 1 ; gene_id "NECTIN4--CDKAL1^NECTIN4^ENSG00000143217.9" ; gene_name NECTIN4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000031475.2" ; havana_transcript "OTTHUMT00000077074.2" ; hgnc_id "HGNC:19688" ; level 2 ; orig_coord_info "chr1,161089218,161089296,-" ; protein_id "ENSP00000356991.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NECTIN4--CDKAL1^ENST00000368012.4" ; transcript_name "NECTIN4-201" ; transcript_support_level 1 ; transcript_type protein_coding
NECTIN4--CDKAL1 HAVANA mRNA 1001 9852 . + . FI_gene_label "NECTIN4^ENSG00000143217.9" ; ID "NECTIN4--CDKAL1^ENST00000368012.4" ; Parent "NECTIN4--CDKAL1^NECTIN4^ENSG00000143217.9" ; ccdsid "CCDS1216.1" ; exon_id "ENSE00001446126.4" ; exon_number 1 ; gene_id "NECTIN4--CDKAL1^NECTIN4^ENSG00000143217.9" ; gene_name NECTIN4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000031475.2" ; havana_transcript "OTTHUMT00000077074.2" ; hgnc_id "HGNC:19688" ; level 2 ; orig_coord_info "chr1,161089218,161089296,-" ; protein_id "ENSP00000356991.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NECTIN4--CDKAL1^ENST00000368012.4" ; transcript_name "NECTIN4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NR2C2--AC097374.1 HAVANA gene 1146 23058 . + . FI_gene_label "NR2C2^ENSG00000177463.15" ; ID "NR2C2--AC097374.1^NR2C2^ENSG00000177463.15" ; ccdsid "CCDS2621.1" ; exon_id "ENSE00003674077.1" ; exon_number 2 ; gene_id "NR2C2--AC097374.1^NR2C2^ENSG00000177463.15" ; gene_name NR2C2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129839.4" ; havana_transcript "OTTHUMT00000252079.2" ; hgnc_id "HGNC:7972" ; level 2 ; orig_coord_info "chr3,15003915,15003986,+" ; protein_id "ENSP00000320447.6" ; tag basic CCDS ; transcript_id "NR2C2--AC097374.1^ENST00000323373.10" ; transcript_name "NR2C2-201" ; transcript_support_level 1 ; transcript_type protein_coding
NR2C2--AC097374.1 HAVANA mRNA 1146 23058 . + . FI_gene_label "NR2C2^ENSG00000177463.15" ; ID "NR2C2--AC097374.1^ENST00000323373.10" ; Parent "NR2C2--AC097374.1^NR2C2^ENSG00000177463.15" ; ccdsid "CCDS2621.1" ; exon_id "ENSE00003674077.1" ; exon_number 2 ; gene_id "NR2C2--AC097374.1^NR2C2^ENSG00000177463.15" ; gene_name NR2C2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129839.4" ; havana_transcript "OTTHUMT00000252079.2" ; hgnc_id "HGNC:7972" ; level 2 ; orig_coord_info "chr3,15003915,15003986,+" ; protein_id "ENSP00000320447.6" ; tag basic CCDS ; transcript_id "NR2C2--AC097374.1^ENST00000323373.10" ; transcript_name "NR2C2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NR2C2--AC114947.1 HAVANA gene 1146 23058 . + . FI_gene_label "NR2C2^ENSG00000177463.15" ; ID "NR2C2--AC114947.1^NR2C2^ENSG00000177463.15" ; ccdsid "CCDS2621.1" ; exon_id "ENSE00003674077.1" ; exon_number 2 ; gene_id "NR2C2--AC114947.1^NR2C2^ENSG00000177463.15" ; gene_name NR2C2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129839.4" ; havana_transcript "OTTHUMT00000252079.2" ; hgnc_id "HGNC:7972" ; level 2 ; orig_coord_info "chr3,15003915,15003986,+" ; protein_id "ENSP00000320447.6" ; tag basic CCDS ; transcript_id "NR2C2--AC114947.1^ENST00000323373.10" ; transcript_name "NR2C2-201" ; transcript_support_level 1 ; transcript_type protein_coding
NR2C2--AC114947.1 HAVANA mRNA 1146 23058 . + . FI_gene_label "NR2C2^ENSG00000177463.15" ; ID "NR2C2--AC114947.1^ENST00000323373.10" ; Parent "NR2C2--AC114947.1^NR2C2^ENSG00000177463.15" ; ccdsid "CCDS2621.1" ; exon_id "ENSE00003674077.1" ; exon_number 2 ; gene_id "NR2C2--AC114947.1^NR2C2^ENSG00000177463.15" ; gene_name NR2C2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129839.4" ; havana_transcript "OTTHUMT00000252079.2" ; hgnc_id "HGNC:7972" ; level 2 ; orig_coord_info "chr3,15003915,15003986,+" ; protein_id "ENSP00000320447.6" ; tag basic CCDS ; transcript_id "NR2C2--AC114947.1^ENST00000323373.10" ; transcript_name "NR2C2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NR2C2--AC134878.1 HAVANA gene 1146 23058 . + . FI_gene_label "NR2C2^ENSG00000177463.15" ; ID "NR2C2--AC134878.1^NR2C2^ENSG00000177463.15" ; ccdsid "CCDS2621.1" ; exon_id "ENSE00003674077.1" ; exon_number 2 ; gene_id "NR2C2--AC134878.1^NR2C2^ENSG00000177463.15" ; gene_name NR2C2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129839.4" ; havana_transcript "OTTHUMT00000252079.2" ; hgnc_id "HGNC:7972" ; level 2 ; orig_coord_info "chr3,15003915,15003986,+" ; protein_id "ENSP00000320447.6" ; tag basic CCDS ; transcript_id "NR2C2--AC134878.1^ENST00000323373.10" ; transcript_name "NR2C2-201" ; transcript_support_level 1 ; transcript_type protein_coding
NR2C2--AC134878.1 HAVANA mRNA 1146 23058 . + . FI_gene_label "NR2C2^ENSG00000177463.15" ; ID "NR2C2--AC134878.1^ENST00000323373.10" ; Parent "NR2C2--AC134878.1^NR2C2^ENSG00000177463.15" ; ccdsid "CCDS2621.1" ; exon_id "ENSE00003674077.1" ; exon_number 2 ; gene_id "NR2C2--AC134878.1^NR2C2^ENSG00000177463.15" ; gene_name NR2C2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129839.4" ; havana_transcript "OTTHUMT00000252079.2" ; hgnc_id "HGNC:7972" ; level 2 ; orig_coord_info "chr3,15003915,15003986,+" ; protein_id "ENSP00000320447.6" ; tag basic CCDS ; transcript_id "NR2C2--AC134878.1^ENST00000323373.10" ; transcript_name "NR2C2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NR2C2--AC138776.1 HAVANA gene 1146 23058 . + . FI_gene_label "NR2C2^ENSG00000177463.15" ; ID "NR2C2--AC138776.1^NR2C2^ENSG00000177463.15" ; ccdsid "CCDS2621.1" ; exon_id "ENSE00003674077.1" ; exon_number 2 ; gene_id "NR2C2--AC138776.1^NR2C2^ENSG00000177463.15" ; gene_name NR2C2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129839.4" ; havana_transcript "OTTHUMT00000252079.2" ; hgnc_id "HGNC:7972" ; level 2 ; orig_coord_info "chr3,15003915,15003986,+" ; protein_id "ENSP00000320447.6" ; tag basic CCDS ; transcript_id "NR2C2--AC138776.1^ENST00000323373.10" ; transcript_name "NR2C2-201" ; transcript_support_level 1 ; transcript_type protein_coding
NR2C2--AC138776.1 HAVANA mRNA 1146 23058 . + . FI_gene_label "NR2C2^ENSG00000177463.15" ; ID "NR2C2--AC138776.1^ENST00000323373.10" ; Parent "NR2C2--AC138776.1^NR2C2^ENSG00000177463.15" ; ccdsid "CCDS2621.1" ; exon_id "ENSE00003674077.1" ; exon_number 2 ; gene_id "NR2C2--AC138776.1^NR2C2^ENSG00000177463.15" ; gene_name NR2C2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129839.4" ; havana_transcript "OTTHUMT00000252079.2" ; hgnc_id "HGNC:7972" ; level 2 ; orig_coord_info "chr3,15003915,15003986,+" ; protein_id "ENSP00000320447.6" ; tag basic CCDS ; transcript_id "NR2C2--AC138776.1^ENST00000323373.10" ; transcript_name "NR2C2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NR2C2--AC140113.1 HAVANA gene 1146 23058 . + . FI_gene_label "NR2C2^ENSG00000177463.15" ; ID "NR2C2--AC140113.1^NR2C2^ENSG00000177463.15" ; ccdsid "CCDS2621.1" ; exon_id "ENSE00003674077.1" ; exon_number 2 ; gene_id "NR2C2--AC140113.1^NR2C2^ENSG00000177463.15" ; gene_name NR2C2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129839.4" ; havana_transcript "OTTHUMT00000252079.2" ; hgnc_id "HGNC:7972" ; level 2 ; orig_coord_info "chr3,15003915,15003986,+" ; protein_id "ENSP00000320447.6" ; tag basic CCDS ; transcript_id "NR2C2--AC140113.1^ENST00000323373.10" ; transcript_name "NR2C2-201" ; transcript_support_level 1 ; transcript_type protein_coding
NR2C2--AC140113.1 HAVANA mRNA 1146 23058 . + . FI_gene_label "NR2C2^ENSG00000177463.15" ; ID "NR2C2--AC140113.1^ENST00000323373.10" ; Parent "NR2C2--AC140113.1^NR2C2^ENSG00000177463.15" ; ccdsid "CCDS2621.1" ; exon_id "ENSE00003674077.1" ; exon_number 2 ; gene_id "NR2C2--AC140113.1^NR2C2^ENSG00000177463.15" ; gene_name NR2C2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129839.4" ; havana_transcript "OTTHUMT00000252079.2" ; hgnc_id "HGNC:7972" ; level 2 ; orig_coord_info "chr3,15003915,15003986,+" ; protein_id "ENSP00000320447.6" ; tag basic CCDS ; transcript_id "NR2C2--AC140113.1^ENST00000323373.10" ; transcript_name "NR2C2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCLAF--AC100830.1 HAVANA gene 3791 9825 . + . FI_gene_label "PCLAF^ENSG00000166803.14" ; ID "PCLAF--AC100830.1^PCLAF^ENSG00000166803.14" ; ccdsid "CCDS10193.1" ; exon_id "ENSE00002571166.1" ; exon_number 1 ; gene_id "PCLAF--AC100830.1^PCLAF^ENSG00000166803.14" ; gene_name PCLAF ; gene_type protein_coding ; havana_gene "OTTHUMG00000133017.5" ; havana_transcript "OTTHUMT00000256603.3" ; hgnc_id "HGNC:28961" ; level 2 ; orig_coord_info "chr15,64381326,64381371,-" ; protein_id "ENSP00000300035.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCLAF--AC100830.1^ENST00000300035.9" ; transcript_name "PCLAF-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCLAF--AC100830.1 HAVANA mRNA 3791 9825 . + . FI_gene_label "PCLAF^ENSG00000166803.14" ; ID "PCLAF--AC100830.1^ENST00000300035.9" ; Parent "PCLAF--AC100830.1^PCLAF^ENSG00000166803.14" ; ccdsid "CCDS10193.1" ; exon_id "ENSE00002571166.1" ; exon_number 1 ; gene_id "PCLAF--AC100830.1^PCLAF^ENSG00000166803.14" ; gene_name PCLAF ; gene_type protein_coding ; havana_gene "OTTHUMG00000133017.5" ; havana_transcript "OTTHUMT00000256603.3" ; hgnc_id "HGNC:28961" ; level 2 ; orig_coord_info "chr15,64381326,64381371,-" ; protein_id "ENSP00000300035.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCLAF--AC100830.1^ENST00000300035.9" ; transcript_name "PCLAF-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCLAF--AKAP13 HAVANA gene 3791 9825 . + . FI_gene_label "PCLAF^ENSG00000166803.14" ; ID "PCLAF--AKAP13^PCLAF^ENSG00000166803.14" ; ccdsid "CCDS10193.1" ; exon_id "ENSE00002571166.1" ; exon_number 1 ; gene_id "PCLAF--AKAP13^PCLAF^ENSG00000166803.14" ; gene_name PCLAF ; gene_type protein_coding ; havana_gene "OTTHUMG00000133017.5" ; havana_transcript "OTTHUMT00000256603.3" ; hgnc_id "HGNC:28961" ; level 2 ; orig_coord_info "chr15,64381326,64381371,-" ; protein_id "ENSP00000300035.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCLAF--AKAP13^ENST00000300035.9" ; transcript_name "PCLAF-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCLAF--AKAP13 HAVANA mRNA 3791 9825 . + . FI_gene_label "PCLAF^ENSG00000166803.14" ; ID "PCLAF--AKAP13^ENST00000300035.9" ; Parent "PCLAF--AKAP13^PCLAF^ENSG00000166803.14" ; ccdsid "CCDS10193.1" ; exon_id "ENSE00002571166.1" ; exon_number 1 ; gene_id "PCLAF--AKAP13^PCLAF^ENSG00000166803.14" ; gene_name PCLAF ; gene_type protein_coding ; havana_gene "OTTHUMG00000133017.5" ; havana_transcript "OTTHUMT00000256603.3" ; hgnc_id "HGNC:28961" ; level 2 ; orig_coord_info "chr15,64381326,64381371,-" ; protein_id "ENSP00000300035.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCLAF--AKAP13^ENST00000300035.9" ; transcript_name "PCLAF-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCLAF--AKAP13 HAVANA gene 12984 69974 . + . FI_gene_label "AKAP13^ENSG00000170776.22" ; ID "PCLAF--AKAP13^AKAP13^ENSG00000170776.22" ; ccdsid "CCDS32320.1" ; exon_id "ENSE00002705517.1" ; exon_number 2 ; gene_id "PCLAF--AKAP13^AKAP13^ENSG00000170776.22" ; gene_name AKAP13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172205.3" ; havana_transcript "OTTHUMT00000417319.1" ; hgnc_id "HGNC:371" ; level 2 ; orig_coord_info "chr15,85485721,85485753,+" ; protein_id "ENSP00000354718.2" ; tag basic appris_alternative_2 CCDS ; transcript_id "PCLAF--AKAP13^ENST00000361243.6" ; transcript_name "AKAP13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCLAF--AKAP13 HAVANA mRNA 12984 69974 . + . FI_gene_label "AKAP13^ENSG00000170776.22" ; ID "PCLAF--AKAP13^ENST00000361243.6" ; Parent "PCLAF--AKAP13^AKAP13^ENSG00000170776.22" ; ccdsid "CCDS32320.1" ; exon_id "ENSE00002705517.1" ; exon_number 2 ; gene_id "PCLAF--AKAP13^AKAP13^ENSG00000170776.22" ; gene_name AKAP13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172205.3" ; havana_transcript "OTTHUMT00000417319.1" ; hgnc_id "HGNC:371" ; level 2 ; orig_coord_info "chr15,85485721,85485753,+" ; protein_id "ENSP00000354718.2" ; tag basic appris_alternative_2 CCDS ; transcript_id "PCLAF--AKAP13^ENST00000361243.6" ; transcript_name "AKAP13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCLAF--RBPMS2 HAVANA gene 3791 9825 . + . FI_gene_label "PCLAF^ENSG00000166803.14" ; ID "PCLAF--RBPMS2^PCLAF^ENSG00000166803.14" ; ccdsid "CCDS10193.1" ; exon_id "ENSE00002571166.1" ; exon_number 1 ; gene_id "PCLAF--RBPMS2^PCLAF^ENSG00000166803.14" ; gene_name PCLAF ; gene_type protein_coding ; havana_gene "OTTHUMG00000133017.5" ; havana_transcript "OTTHUMT00000256603.3" ; hgnc_id "HGNC:28961" ; level 2 ; orig_coord_info "chr15,64381326,64381371,-" ; protein_id "ENSP00000300035.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCLAF--RBPMS2^ENST00000300035.9" ; transcript_name "PCLAF-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCLAF--RBPMS2 HAVANA mRNA 3791 9825 . + . FI_gene_label "PCLAF^ENSG00000166803.14" ; ID "PCLAF--RBPMS2^ENST00000300035.9" ; Parent "PCLAF--RBPMS2^PCLAF^ENSG00000166803.14" ; ccdsid "CCDS10193.1" ; exon_id "ENSE00002571166.1" ; exon_number 1 ; gene_id "PCLAF--RBPMS2^PCLAF^ENSG00000166803.14" ; gene_name PCLAF ; gene_type protein_coding ; havana_gene "OTTHUMG00000133017.5" ; havana_transcript "OTTHUMT00000256603.3" ; hgnc_id "HGNC:28961" ; level 2 ; orig_coord_info "chr15,64381326,64381371,-" ; protein_id "ENSP00000300035.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCLAF--RBPMS2^ENST00000300035.9" ; transcript_name "PCLAF-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCLAF--RBPMS2 HAVANA gene 12826 20662 . + . FI_gene_label "RBPMS2^ENSG00000166831.9" ; ID "PCLAF--RBPMS2^RBPMS2^ENSG00000166831.9" ; ccdsid "CCDS32271.1" ; exon_id "ENSE00001303912.5" ; exon_number 1 ; gene_id "PCLAF--RBPMS2^RBPMS2^ENSG00000166831.9" ; gene_name RBPMS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172423.3" ; havana_transcript "OTTHUMT00000418466.2" ; hgnc_id "HGNC:19098" ; level 2 ; orig_coord_info "chr15,64775233,64775319,-" ; protein_id "ENSP00000300069.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCLAF--RBPMS2^ENST00000300069.5" ; transcript_name "RBPMS2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCLAF--RBPMS2 HAVANA mRNA 12826 20662 . + . FI_gene_label "RBPMS2^ENSG00000166831.9" ; ID "PCLAF--RBPMS2^ENST00000300069.5" ; Parent "PCLAF--RBPMS2^RBPMS2^ENSG00000166831.9" ; ccdsid "CCDS32271.1" ; exon_id "ENSE00001303912.5" ; exon_number 1 ; gene_id "PCLAF--RBPMS2^RBPMS2^ENSG00000166831.9" ; gene_name RBPMS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172423.3" ; havana_transcript "OTTHUMT00000418466.2" ; hgnc_id "HGNC:19098" ; level 2 ; orig_coord_info "chr15,64775233,64775319,-" ; protein_id "ENSP00000300069.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCLAF--RBPMS2^ENST00000300069.5" ; transcript_name "RBPMS2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCNT--RYR2 HAVANA gene 1016 51432 . + . FI_gene_label "PCNT^ENSG00000160299.17" ; ID "PCNT--RYR2^PCNT^ENSG00000160299.17" ; ccdsid "CCDS33592.1" ; exon_id "ENSE00001740168.2" ; exon_number 1 ; gene_id "PCNT--RYR2^PCNT^ENSG00000160299.17" ; gene_name PCNT ; gene_type protein_coding ; havana_gene "OTTHUMG00000090665.2" ; havana_transcript "OTTHUMT00000207336.2" ; hgnc_id "HGNC:16068" ; level 2 ; orig_coord_info "chr21,46324229,46324282,+" ; protein_id "ENSP00000352572.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCNT--RYR2^ENST00000359568.10" ; transcript_name "PCNT-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCNT--RYR2 HAVANA mRNA 1016 51432 . + . FI_gene_label "PCNT^ENSG00000160299.17" ; ID "PCNT--RYR2^ENST00000359568.10" ; Parent "PCNT--RYR2^PCNT^ENSG00000160299.17" ; ccdsid "CCDS33592.1" ; exon_id "ENSE00001740168.2" ; exon_number 1 ; gene_id "PCNT--RYR2^PCNT^ENSG00000160299.17" ; gene_name PCNT ; gene_type protein_coding ; havana_gene "OTTHUMG00000090665.2" ; havana_transcript "OTTHUMT00000207336.2" ; hgnc_id "HGNC:16068" ; level 2 ; orig_coord_info "chr21,46324229,46324282,+" ; protein_id "ENSP00000352572.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCNT--RYR2^ENST00000359568.10" ; transcript_name "PCNT-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCNT--RYR2 ENSEMBL gene 55819 175309 . + . FI_gene_label "RYR2^ENSG00000198626.17" ; ID "PCNT--RYR2^RYR2^ENSG00000198626.17" ; exon_id "ENSE00003728105.1" ; exon_number 1 ; gene_id "PCNT--RYR2^RYR2^ENSG00000198626.17" ; gene_name RYR2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000039543.5" ; hgnc_id "HGNC:10484" ; level 3 ; orig_coord_info "chr1,237270497,237270616,+" ; protein_id "ENSP00000353174.7" ; tag basic ; transcript_id "PCNT--RYR2^ENST00000360064.7" ; transcript_name "RYR2-201" ; transcript_support_level 5 ; transcript_type protein_coding
PCNT--RYR2 ENSEMBL mRNA 55819 175309 . + . FI_gene_label "RYR2^ENSG00000198626.17" ; ID "PCNT--RYR2^ENST00000360064.7" ; Parent "PCNT--RYR2^RYR2^ENSG00000198626.17" ; exon_id "ENSE00003728105.1" ; exon_number 1 ; gene_id "PCNT--RYR2^RYR2^ENSG00000198626.17" ; gene_name RYR2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000039543.5" ; hgnc_id "HGNC:10484" ; level 3 ; orig_coord_info "chr1,237270497,237270616,+" ; protein_id "ENSP00000353174.7" ; tag basic ; transcript_id "PCNT--RYR2^ENST00000360064.7" ; transcript_name "RYR2-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PFN2--RNF13 HAVANA gene 4700 9926 . + . FI_gene_label "PFN2^ENSG00000070087.14" ; ID "PFN2--RNF13^PFN2^ENSG00000070087.14" ; ccdsid "CCDS3148.1" ; exon_id "ENSE00001881955.1" ; exon_number 1 ; gene_id "PFN2--RNF13^PFN2^ENSG00000070087.14" ; gene_name PFN2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159683.5" ; havana_transcript "OTTHUMT00000356873.2" ; hgnc_id "HGNC:8882" ; level 2 ; orig_coord_info "chr3,149970725,149970856,-" ; protein_id "ENSP00000239940.7" ; tag basic appris_alternative_1 CCDS ; transcript_id "PFN2--RNF13^ENST00000239940.11" ; transcript_name "PFN2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PFN2--RNF13 HAVANA mRNA 4700 9926 . + . FI_gene_label "PFN2^ENSG00000070087.14" ; ID "PFN2--RNF13^ENST00000239940.11" ; Parent "PFN2--RNF13^PFN2^ENSG00000070087.14" ; ccdsid "CCDS3148.1" ; exon_id "ENSE00001881955.1" ; exon_number 1 ; gene_id "PFN2--RNF13^PFN2^ENSG00000070087.14" ; gene_name PFN2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159683.5" ; havana_transcript "OTTHUMT00000356873.2" ; hgnc_id "HGNC:8882" ; level 2 ; orig_coord_info "chr3,149970725,149970856,-" ; protein_id "ENSP00000239940.7" ; tag basic appris_alternative_1 CCDS ; transcript_id "PFN2--RNF13^ENST00000239940.11" ; transcript_name "PFN2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PFN2--RNF13 HAVANA gene 12927 27749 . + . FI_gene_label "RNF13^ENSG00000082996.20" ; ID "PFN2--RNF13^RNF13^ENSG00000082996.20" ; ccdsid "CCDS3146.1" ; exon_id "ENSE00001792153.1" ; exon_number 3 ; gene_id "PFN2--RNF13^RNF13^ENSG00000082996.20" ; gene_name RNF13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150338.7" ; havana_transcript "OTTHUMT00000356876.1" ; hgnc_id "HGNC:10057" ; level 2 ; orig_coord_info "chr3,149846027,149846140,+" ; protein_id "ENSP00000341361.3" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "PFN2--RNF13^ENST00000344229.7" ; transcript_name "RNF13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PFN2--RNF13 HAVANA mRNA 12927 27749 . + . FI_gene_label "RNF13^ENSG00000082996.20" ; ID "PFN2--RNF13^ENST00000344229.7" ; Parent "PFN2--RNF13^RNF13^ENSG00000082996.20" ; ccdsid "CCDS3146.1" ; exon_id "ENSE00001792153.1" ; exon_number 3 ; gene_id "PFN2--RNF13^RNF13^ENSG00000082996.20" ; gene_name RNF13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150338.7" ; havana_transcript "OTTHUMT00000356876.1" ; hgnc_id "HGNC:10057" ; level 2 ; orig_coord_info "chr3,149846027,149846140,+" ; protein_id "ENSP00000341361.3" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "PFN2--RNF13^ENST00000344229.7" ; transcript_name "RNF13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PLEKHO2--AL589923.1 HAVANA gene 1033 9721 . + . FI_gene_label "PLEKHO2^ENSG00000241839.10" ; ID "PLEKHO2--AL589923.1^PLEKHO2^ENSG00000241839.10" ; ccdsid "CCDS10196.1" ; exon_id "ENSE00001412207.3" ; exon_number 1 ; gene_id "PLEKHO2--AL589923.1^PLEKHO2^ENSG00000241839.10" ; gene_name PLEKHO2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133050.4" ; havana_transcript "OTTHUMT00000256659.2" ; hgnc_id "HGNC:30026" ; level 2 ; orig_coord_info "chr15,64842017,64842028,+" ; protein_id "ENSP00000326706.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PLEKHO2--AL589923.1^ENST00000323544.5" ; transcript_name "PLEKHO2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PLEKHO2--AL589923.1 HAVANA mRNA 1033 9721 . + . FI_gene_label "PLEKHO2^ENSG00000241839.10" ; ID "PLEKHO2--AL589923.1^ENST00000323544.5" ; Parent "PLEKHO2--AL589923.1^PLEKHO2^ENSG00000241839.10" ; ccdsid "CCDS10196.1" ; exon_id "ENSE00001412207.3" ; exon_number 1 ; gene_id "PLEKHO2--AL589923.1^PLEKHO2^ENSG00000241839.10" ; gene_name PLEKHO2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133050.4" ; havana_transcript "OTTHUMT00000256659.2" ; hgnc_id "HGNC:30026" ; level 2 ; orig_coord_info "chr15,64842017,64842028,+" ; protein_id "ENSP00000326706.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PLEKHO2--AL589923.1^ENST00000323544.5" ; transcript_name "PLEKHO2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PLEKHO2--PBX3 HAVANA gene 1033 9721 . + . FI_gene_label "PLEKHO2^ENSG00000241839.10" ; ID "PLEKHO2--PBX3^PLEKHO2^ENSG00000241839.10" ; ccdsid "CCDS10196.1" ; exon_id "ENSE00001412207.3" ; exon_number 1 ; gene_id "PLEKHO2--PBX3^PLEKHO2^ENSG00000241839.10" ; gene_name PLEKHO2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133050.4" ; havana_transcript "OTTHUMT00000256659.2" ; hgnc_id "HGNC:30026" ; level 2 ; orig_coord_info "chr15,64842017,64842028,+" ; protein_id "ENSP00000326706.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PLEKHO2--PBX3^ENST00000323544.5" ; transcript_name "PLEKHO2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PLEKHO2--PBX3 HAVANA mRNA 1033 9721 . + . FI_gene_label "PLEKHO2^ENSG00000241839.10" ; ID "PLEKHO2--PBX3^ENST00000323544.5" ; Parent "PLEKHO2--PBX3^PLEKHO2^ENSG00000241839.10" ; ccdsid "CCDS10196.1" ; exon_id "ENSE00001412207.3" ; exon_number 1 ; gene_id "PLEKHO2--PBX3^PLEKHO2^ENSG00000241839.10" ; gene_name PLEKHO2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133050.4" ; havana_transcript "OTTHUMT00000256659.2" ; hgnc_id "HGNC:30026" ; level 2 ; orig_coord_info "chr15,64842017,64842028,+" ; protein_id "ENSP00000326706.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PLEKHO2--PBX3^ENST00000323544.5" ; transcript_name "PLEKHO2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PLEKHO2--PBX3 HAVANA gene 12722 32929 . + . FI_gene_label "PBX3^ENSG00000167081.18" ; ID "PLEKHO2--PBX3^PBX3^ENSG00000167081.18" ; ccdsid "CCDS83416.1" ; exon_id "ENSE00001460675.3" ; exon_number 1 ; gene_id "PLEKHO2--PBX3^PBX3^ENSG00000167081.18" ; gene_name PBX3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020684.6" ; havana_transcript "OTTHUMT00000054100.2" ; hgnc_id "HGNC:8634" ; level 2 ; orig_coord_info "chr9,125747454,125747653,+" ; protein_id "ENSP00000341990.5" ; tag basic appris_alternative_1 CCDS ; transcript_id "PLEKHO2--PBX3^ENST00000342287.9" ; transcript_name "PBX3-201" ; transcript_support_level 5 ; transcript_type protein_coding
PLEKHO2--PBX3 HAVANA mRNA 12722 32929 . + . FI_gene_label "PBX3^ENSG00000167081.18" ; ID "PLEKHO2--PBX3^ENST00000342287.9" ; Parent "PLEKHO2--PBX3^PBX3^ENSG00000167081.18" ; ccdsid "CCDS83416.1" ; exon_id "ENSE00001460675.3" ; exon_number 1 ; gene_id "PLEKHO2--PBX3^PBX3^ENSG00000167081.18" ; gene_name PBX3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020684.6" ; havana_transcript "OTTHUMT00000054100.2" ; hgnc_id "HGNC:8634" ; level 2 ; orig_coord_info "chr9,125747454,125747653,+" ; protein_id "ENSP00000341990.5" ; tag basic appris_alternative_1 CCDS ; transcript_id "PLEKHO2--PBX3^ENST00000342287.9" ; transcript_name "PBX3-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PRSS27--TPSB2 HAVANA gene 1328 8540 . + . FI_gene_label "PRSS27^ENSG00000172382.10" ; ID "PRSS27--TPSB2^PRSS27^ENSG00000172382.10" ; ccdsid "CCDS10476.1" ; exon_id "ENSE00001215985.4" ; exon_number 1 ; gene_id "PRSS27--TPSB2^PRSS27^ENSG00000172382.10" ; gene_name PRSS27 ; gene_type protein_coding ; havana_gene "OTTHUMG00000128929.3" ; havana_transcript "OTTHUMT00000250908.2" ; hgnc_id "HGNC:15475" ; level 2 ; orig_coord_info "chr16,2720115,2720160,-" ; protein_id "ENSP00000306390.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PRSS27--TPSB2^ENST00000302641.8" ; transcript_name "PRSS27-201" ; transcript_support_level 1 ; transcript_type protein_coding
PRSS27--TPSB2 HAVANA mRNA 1328 8540 . + . FI_gene_label "PRSS27^ENSG00000172382.10" ; ID "PRSS27--TPSB2^ENST00000302641.8" ; Parent "PRSS27--TPSB2^PRSS27^ENSG00000172382.10" ; ccdsid "CCDS10476.1" ; exon_id "ENSE00001215985.4" ; exon_number 1 ; gene_id "PRSS27--TPSB2^PRSS27^ENSG00000172382.10" ; gene_name PRSS27 ; gene_type protein_coding ; havana_gene "OTTHUMG00000128929.3" ; havana_transcript "OTTHUMT00000250908.2" ; hgnc_id "HGNC:15475" ; level 2 ; orig_coord_info "chr16,2720115,2720160,-" ; protein_id "ENSP00000306390.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PRSS27--TPSB2^ENST00000302641.8" ; transcript_name "PRSS27-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PRSS27--TPSB2 HAVANA gene 11544 13392 . + . FI_gene_label "TPSB2^ENSG00000197253.13" ; ID "PRSS27--TPSB2^TPSB2^ENSG00000197253.13" ; exon_id "ENSE00003747406.1" ; exon_number 2 ; gene_id "PRSS27--TPSB2^TPSB2^ENSG00000197253.13" ; gene_name TPSB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155926.4" ; havana_transcript "OTTHUMT00000342363.2" ; hgnc_id "HGNC:14120" ; level 2 ; orig_coord_info "chr16,1229891,1229951,-" ; protein_id "ENSP00000482743.1" ; tag basic MANE_Select appris_principal_4 ; transcript_id "PRSS27--TPSB2^ENST00000606293.5" ; transcript_name "TPSB2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PRSS27--TPSB2 HAVANA mRNA 11544 13392 . + . FI_gene_label "TPSB2^ENSG00000197253.13" ; ID "PRSS27--TPSB2^ENST00000606293.5" ; Parent "PRSS27--TPSB2^TPSB2^ENSG00000197253.13" ; exon_id "ENSE00003747406.1" ; exon_number 2 ; gene_id "PRSS27--TPSB2^TPSB2^ENSG00000197253.13" ; gene_name TPSB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155926.4" ; havana_transcript "OTTHUMT00000342363.2" ; hgnc_id "HGNC:14120" ; level 2 ; orig_coord_info "chr16,1229891,1229951,-" ; protein_id "ENSP00000482743.1" ; tag basic MANE_Select appris_principal_4 ; transcript_id "PRSS27--TPSB2^ENST00000606293.5" ; transcript_name "TPSB2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PRTG--FER1L6 HAVANA gene 1001 34532 . + . FI_gene_label "PRTG^ENSG00000166450.13" ; ID "PRTG--FER1L6^PRTG^ENSG00000166450.13" ; ccdsid "CCDS42040.1" ; exon_id "ENSE00001536751.2" ; exon_number 1 ; gene_id "PRTG--FER1L6^PRTG^ENSG00000166450.13" ; gene_name PRTG ; gene_type protein_coding ; havana_gene "OTTHUMG00000172591.5" ; havana_transcript "OTTHUMT00000419357.2" ; hgnc_id "HGNC:26373" ; level 2 ; orig_coord_info "chr15,55742838,55742931,-" ; protein_id "ENSP00000373937.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PRTG--FER1L6^ENST00000389286.9" ; transcript_name "PRTG-201" ; transcript_support_level 1 ; transcript_type protein_coding
PRTG--FER1L6 HAVANA mRNA 1001 34532 . + . FI_gene_label "PRTG^ENSG00000166450.13" ; ID "PRTG--FER1L6^ENST00000389286.9" ; Parent "PRTG--FER1L6^PRTG^ENSG00000166450.13" ; ccdsid "CCDS42040.1" ; exon_id "ENSE00001536751.2" ; exon_number 1 ; gene_id "PRTG--FER1L6^PRTG^ENSG00000166450.13" ; gene_name PRTG ; gene_type protein_coding ; havana_gene "OTTHUMG00000172591.5" ; havana_transcript "OTTHUMT00000419357.2" ; hgnc_id "HGNC:26373" ; level 2 ; orig_coord_info "chr15,55742838,55742931,-" ; protein_id "ENSP00000373937.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PRTG--FER1L6^ENST00000389286.9" ; transcript_name "PRTG-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PRTG--FER1L6 HAVANA gene 37533 80513 . + . FI_gene_label "FER1L6^ENSG00000214814.7" ; ID "PRTG--FER1L6^FER1L6^ENSG00000214814.7" ; ccdsid "CCDS43767.1" ; exon_id "ENSE00002139439.1" ; exon_number 2 ; gene_id "PRTG--FER1L6^FER1L6^ENSG00000214814.7" ; gene_name FER1L6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164998.1" ; havana_transcript "OTTHUMT00000381400.1" ; hgnc_id "HGNC:28065" ; level 2 ; orig_coord_info "chr8,123955999,123956074,+" ; protein_id "ENSP00000428280.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PRTG--FER1L6^ENST00000522917.5" ; transcript_name "FER1L6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PRTG--FER1L6 HAVANA mRNA 37533 80513 . + . FI_gene_label "FER1L6^ENSG00000214814.7" ; ID "PRTG--FER1L6^ENST00000522917.5" ; Parent "PRTG--FER1L6^FER1L6^ENSG00000214814.7" ; ccdsid "CCDS43767.1" ; exon_id "ENSE00002139439.1" ; exon_number 2 ; gene_id "PRTG--FER1L6^FER1L6^ENSG00000214814.7" ; gene_name FER1L6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164998.1" ; havana_transcript "OTTHUMT00000381400.1" ; hgnc_id "HGNC:28065" ; level 2 ; orig_coord_info "chr8,123955999,123956074,+" ; protein_id "ENSP00000428280.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PRTG--FER1L6^ENST00000522917.5" ; transcript_name "FER1L6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PTPN9--CCDC33 HAVANA gene 48375 55027 . + . FI_gene_label "CCDC33^ENSG00000140481.15" ; ID "PTPN9--CCDC33^CCDC33^ENSG00000140481.15" ; ccdsid "CCDS42059.1" ; exon_id "ENSE00002538139.1" ; exon_number 1 ; gene_id "PTPN9--CCDC33^CCDC33^ENSG00000140481.15" ; gene_name CCDC33 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172621.6" ; havana_transcript "OTTHUMT00000419494.1" ; hgnc_id "HGNC:26552" ; level 2 ; orig_coord_info "chr15,74318590,74318658,+" ; protein_id "ENSP00000268082.4" ; tag basic CCDS ; transcript_id "PTPN9--CCDC33^ENST00000268082.4" ; transcript_name "CCDC33-201" ; transcript_support_level 1 ; transcript_type protein_coding
PTPN9--CCDC33 HAVANA mRNA 48375 55027 . + . FI_gene_label "CCDC33^ENSG00000140481.15" ; ID "PTPN9--CCDC33^ENST00000268082.4" ; Parent "PTPN9--CCDC33^CCDC33^ENSG00000140481.15" ; ccdsid "CCDS42059.1" ; exon_id "ENSE00002538139.1" ; exon_number 1 ; gene_id "PTPN9--CCDC33^CCDC33^ENSG00000140481.15" ; gene_name CCDC33 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172621.6" ; havana_transcript "OTTHUMT00000419494.1" ; hgnc_id "HGNC:26552" ; level 2 ; orig_coord_info "chr15,74318590,74318658,+" ; protein_id "ENSP00000268082.4" ; tag basic CCDS ; transcript_id "PTPN9--CCDC33^ENST00000268082.4" ; transcript_name "CCDC33-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PTPN9--CCDC33 ENSEMBL gene 1027 19233 . + . FI_gene_label "PTPN9^ENSG00000169410.10" ; ID "PTPN9--CCDC33^PTPN9^ENSG00000169410.10" ; exon_id "ENSE00003740065.1" ; exon_number 2 ; gene_id "PTPN9--CCDC33^PTPN9^ENSG00000169410.10" ; gene_name PTPN9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000142838.4" ; hgnc_id "HGNC:9661" ; level 3 ; orig_coord_info "chr15,75578714,75578746,-" ; protein_id "ENSP00000303554.3" ; tag basic appris_alternative_2 ; transcript_id "PTPN9--CCDC33^ENST00000306726.6" ; transcript_name "PTPN9-201" ; transcript_support_level 5 ; transcript_type protein_coding
PTPN9--CCDC33 ENSEMBL mRNA 1027 19233 . + . FI_gene_label "PTPN9^ENSG00000169410.10" ; ID "PTPN9--CCDC33^ENST00000306726.6" ; Parent "PTPN9--CCDC33^PTPN9^ENSG00000169410.10" ; exon_id "ENSE00003740065.1" ; exon_number 2 ; gene_id "PTPN9--CCDC33^PTPN9^ENSG00000169410.10" ; gene_name PTPN9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000142838.4" ; hgnc_id "HGNC:9661" ; level 3 ; orig_coord_info "chr15,75578714,75578746,-" ; protein_id "ENSP00000303554.3" ; tag basic appris_alternative_2 ; transcript_id "PTPN9--CCDC33^ENST00000306726.6" ; transcript_name "PTPN9-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PTPN9--PARP6 ENSEMBL gene 29235 48885 . + . FI_gene_label "PARP6^ENSG00000137817.17" ; ID "PTPN9--PARP6^PARP6^ENSG00000137817.17" ; exon_id "ENSE00003733135.1" ; exon_number 1 ; gene_id "PTPN9--PARP6^PARP6^ENSG00000137817.17" ; gene_name PARP6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133443.5" ; hgnc_id "HGNC:26921" ; level 3 ; orig_coord_info "chr15,72267475,72267477,-" ; protein_id "ENSP00000260376.7" ; tag basic ; transcript_id "PTPN9--PARP6^ENST00000260376.11" ; transcript_name "PARP6-201" ; transcript_support_level 5 ; transcript_type protein_coding
PTPN9--PARP6 ENSEMBL mRNA 29235 48885 . + . FI_gene_label "PARP6^ENSG00000137817.17" ; ID "PTPN9--PARP6^ENST00000260376.11" ; Parent "PTPN9--PARP6^PARP6^ENSG00000137817.17" ; exon_id "ENSE00003733135.1" ; exon_number 1 ; gene_id "PTPN9--PARP6^PARP6^ENSG00000137817.17" ; gene_name PARP6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133443.5" ; hgnc_id "HGNC:26921" ; level 3 ; orig_coord_info "chr15,72267475,72267477,-" ; protein_id "ENSP00000260376.7" ; tag basic ; transcript_id "PTPN9--PARP6^ENST00000260376.11" ; transcript_name "PARP6-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PTPN9--PARP6 ENSEMBL gene 1027 19233 . + . FI_gene_label "PTPN9^ENSG00000169410.10" ; ID "PTPN9--PARP6^PTPN9^ENSG00000169410.10" ; exon_id "ENSE00003740065.1" ; exon_number 2 ; gene_id "PTPN9--PARP6^PTPN9^ENSG00000169410.10" ; gene_name PTPN9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000142838.4" ; hgnc_id "HGNC:9661" ; level 3 ; orig_coord_info "chr15,75578714,75578746,-" ; protein_id "ENSP00000303554.3" ; tag basic appris_alternative_2 ; transcript_id "PTPN9--PARP6^ENST00000306726.6" ; transcript_name "PTPN9-201" ; transcript_support_level 5 ; transcript_type protein_coding
PTPN9--PARP6 ENSEMBL mRNA 1027 19233 . + . FI_gene_label "PTPN9^ENSG00000169410.10" ; ID "PTPN9--PARP6^ENST00000306726.6" ; Parent "PTPN9--PARP6^PTPN9^ENSG00000169410.10" ; exon_id "ENSE00003740065.1" ; exon_number 2 ; gene_id "PTPN9--PARP6^PTPN9^ENSG00000169410.10" ; gene_name PTPN9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000142838.4" ; hgnc_id "HGNC:9661" ; level 3 ; orig_coord_info "chr15,75578714,75578746,-" ; protein_id "ENSP00000303554.3" ; tag basic appris_alternative_2 ; transcript_id "PTPN9--PARP6^ENST00000306726.6" ; transcript_name "PTPN9-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
RAB11FIP1--FP236383.3 HAVANA gene 1031 14632 . + . FI_gene_label "RAB11FIP1^ENSG00000156675.16" ; ID "RAB11FIP1--FP236383.3^RAB11FIP1^ENSG00000156675.16" ; ccdsid "CCDS34881.1" ; exon_id "ENSE00002095920.1" ; exon_number 1 ; gene_id "RAB11FIP1--FP236383.3^RAB11FIP1^ENSG00000156675.16" ; gene_name RAB11FIP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164026.4" ; havana_transcript "OTTHUMT00000376815.1" ; hgnc_id "HGNC:30265" ; level 2 ; orig_coord_info "chr8,37899071,37899441,-" ; protein_id "ENSP00000287263.4" ; tag basic appris_alternative_2 CCDS ; transcript_id "RAB11FIP1--FP236383.3^ENST00000287263.8" ; transcript_name "RAB11FIP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
RAB11FIP1--FP236383.3 HAVANA mRNA 1031 14632 . + . FI_gene_label "RAB11FIP1^ENSG00000156675.16" ; ID "RAB11FIP1--FP236383.3^ENST00000287263.8" ; Parent "RAB11FIP1--FP236383.3^RAB11FIP1^ENSG00000156675.16" ; ccdsid "CCDS34881.1" ; exon_id "ENSE00002095920.1" ; exon_number 1 ; gene_id "RAB11FIP1--FP236383.3^RAB11FIP1^ENSG00000156675.16" ; gene_name RAB11FIP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164026.4" ; havana_transcript "OTTHUMT00000376815.1" ; hgnc_id "HGNC:30265" ; level 2 ; orig_coord_info "chr8,37899071,37899441,-" ; protein_id "ENSP00000287263.4" ; tag basic appris_alternative_2 CCDS ; transcript_id "RAB11FIP1--FP236383.3^ENST00000287263.8" ; transcript_name "RAB11FIP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RARS1--AC117834.1 HAVANA gene 1021 17148 . + . FI_gene_label "RARS1^ENSG00000113643.9" ; ID "RARS1--AC117834.1^RARS1^ENSG00000113643.9" ; ccdsid "CCDS4367.1" ; exon_id "ENSE00001148323.6" ; exon_number 1 ; gene_id "RARS1--AC117834.1^RARS1^ENSG00000113643.9" ; gene_name RARS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130411.4" ; havana_transcript "OTTHUMT00000252794.3" ; hgnc_id "HGNC:9870" ; level 2 ; orig_coord_info "chr5,168486499,168486543,+" ; protein_id "ENSP00000231572.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RARS1--AC117834.1^ENST00000231572.8" ; transcript_name "RARS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
RARS1--AC117834.1 HAVANA mRNA 1021 17148 . + . FI_gene_label "RARS1^ENSG00000113643.9" ; ID "RARS1--AC117834.1^ENST00000231572.8" ; Parent "RARS1--AC117834.1^RARS1^ENSG00000113643.9" ; ccdsid "CCDS4367.1" ; exon_id "ENSE00001148323.6" ; exon_number 1 ; gene_id "RARS1--AC117834.1^RARS1^ENSG00000113643.9" ; gene_name RARS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130411.4" ; havana_transcript "OTTHUMT00000252794.3" ; hgnc_id "HGNC:9870" ; level 2 ; orig_coord_info "chr5,168486499,168486543,+" ; protein_id "ENSP00000231572.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RARS1--AC117834.1^ENST00000231572.8" ; transcript_name "RARS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RBL1--AC061997.1 HAVANA gene 1009 22585 . + . FI_gene_label "RBL1^ENSG00000080839.12" ; ID "RBL1--AC061997.1^RBL1^ENSG00000080839.12" ; ccdsid "CCDS13290.1" ; exon_id "ENSE00001869508.1" ; exon_number 1 ; gene_id "RBL1--AC061997.1^RBL1^ENSG00000080839.12" ; gene_name RBL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032406.5" ; havana_transcript "OTTHUMT00000079068.1" ; hgnc_id "HGNC:9893" ; level 2 ; orig_coord_info "chr20,37095773,37095928,-" ; protein_id "ENSP00000343646.3" ; tag basic CCDS ; transcript_id "RBL1--AC061997.1^ENST00000344359.7" ; transcript_name "RBL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
RBL1--AC061997.1 HAVANA mRNA 1009 22585 . + . FI_gene_label "RBL1^ENSG00000080839.12" ; ID "RBL1--AC061997.1^ENST00000344359.7" ; Parent "RBL1--AC061997.1^RBL1^ENSG00000080839.12" ; ccdsid "CCDS13290.1" ; exon_id "ENSE00001869508.1" ; exon_number 1 ; gene_id "RBL1--AC061997.1^RBL1^ENSG00000080839.12" ; gene_name RBL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032406.5" ; havana_transcript "OTTHUMT00000079068.1" ; hgnc_id "HGNC:9893" ; level 2 ; orig_coord_info "chr20,37095773,37095928,-" ; protein_id "ENSP00000343646.3" ; tag basic CCDS ; transcript_id "RBL1--AC061997.1^ENST00000344359.7" ; transcript_name "RBL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RBL1--AC104042.1 HAVANA gene 1009 22585 . + . FI_gene_label "RBL1^ENSG00000080839.12" ; ID "RBL1--AC104042.1^RBL1^ENSG00000080839.12" ; ccdsid "CCDS13290.1" ; exon_id "ENSE00001869508.1" ; exon_number 1 ; gene_id "RBL1--AC104042.1^RBL1^ENSG00000080839.12" ; gene_name RBL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032406.5" ; havana_transcript "OTTHUMT00000079068.1" ; hgnc_id "HGNC:9893" ; level 2 ; orig_coord_info "chr20,37095773,37095928,-" ; protein_id "ENSP00000343646.3" ; tag basic CCDS ; transcript_id "RBL1--AC104042.1^ENST00000344359.7" ; transcript_name "RBL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
RBL1--AC104042.1 HAVANA mRNA 1009 22585 . + . FI_gene_label "RBL1^ENSG00000080839.12" ; ID "RBL1--AC104042.1^ENST00000344359.7" ; Parent "RBL1--AC104042.1^RBL1^ENSG00000080839.12" ; ccdsid "CCDS13290.1" ; exon_id "ENSE00001869508.1" ; exon_number 1 ; gene_id "RBL1--AC104042.1^RBL1^ENSG00000080839.12" ; gene_name RBL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032406.5" ; havana_transcript "OTTHUMT00000079068.1" ; hgnc_id "HGNC:9893" ; level 2 ; orig_coord_info "chr20,37095773,37095928,-" ; protein_id "ENSP00000343646.3" ; tag basic CCDS ; transcript_id "RBL1--AC104042.1^ENST00000344359.7" ; transcript_name "RBL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RELA--RELA-DT HAVANA gene 1001 9138 . + . FI_gene_label "RELA^ENSG00000173039.19" ; ID "RELA--RELA-DT^RELA^ENSG00000173039.19" ; ccdsid "CCDS44651.1" ; exon_id "ENSE00002185926.1" ; exon_number 1 ; gene_id "RELA--RELA-DT^RELA^ENSG00000173039.19" ; gene_name RELA ; gene_type protein_coding ; havana_gene "OTTHUMG00000166566.8" ; havana_transcript "OTTHUMT00000390456.1" ; hgnc_id "HGNC:9955" ; level 2 ; orig_coord_info "chr11,65662826,65662832,-" ; protein_id "ENSP00000311508.9" ; tag basic appris_alternative_2 CCDS ; transcript_id "RELA--RELA-DT^ENST00000308639.13" ; transcript_name "RELA-201" ; transcript_support_level 1 ; transcript_type protein_coding
RELA--RELA-DT HAVANA mRNA 1001 9138 . + . FI_gene_label "RELA^ENSG00000173039.19" ; ID "RELA--RELA-DT^ENST00000308639.13" ; Parent "RELA--RELA-DT^RELA^ENSG00000173039.19" ; ccdsid "CCDS44651.1" ; exon_id "ENSE00002185926.1" ; exon_number 1 ; gene_id "RELA--RELA-DT^RELA^ENSG00000173039.19" ; gene_name RELA ; gene_type protein_coding ; havana_gene "OTTHUMG00000166566.8" ; havana_transcript "OTTHUMT00000390456.1" ; hgnc_id "HGNC:9955" ; level 2 ; orig_coord_info "chr11,65662826,65662832,-" ; protein_id "ENSP00000311508.9" ; tag basic appris_alternative_2 CCDS ; transcript_id "RELA--RELA-DT^ENST00000308639.13" ; transcript_name "RELA-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RNF13--ANKUB1 HAVANA gene 1001 15823 . + . FI_gene_label "RNF13^ENSG00000082996.20" ; ID "RNF13--ANKUB1^RNF13^ENSG00000082996.20" ; ccdsid "CCDS3146.1" ; exon_id "ENSE00001792153.1" ; exon_number 3 ; gene_id "RNF13--ANKUB1^RNF13^ENSG00000082996.20" ; gene_name RNF13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150338.7" ; havana_transcript "OTTHUMT00000356876.1" ; hgnc_id "HGNC:10057" ; level 2 ; orig_coord_info "chr3,149846027,149846140,+" ; protein_id "ENSP00000341361.3" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "RNF13--ANKUB1^ENST00000344229.7" ; transcript_name "RNF13-201" ; transcript_support_level 1 ; transcript_type protein_coding
RNF13--ANKUB1 HAVANA mRNA 1001 15823 . + . FI_gene_label "RNF13^ENSG00000082996.20" ; ID "RNF13--ANKUB1^ENST00000344229.7" ; Parent "RNF13--ANKUB1^RNF13^ENSG00000082996.20" ; ccdsid "CCDS3146.1" ; exon_id "ENSE00001792153.1" ; exon_number 3 ; gene_id "RNF13--ANKUB1^RNF13^ENSG00000082996.20" ; gene_name RNF13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150338.7" ; havana_transcript "OTTHUMT00000356876.1" ; hgnc_id "HGNC:10057" ; level 2 ; orig_coord_info "chr3,149846027,149846140,+" ; protein_id "ENSP00000341361.3" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "RNF13--ANKUB1^ENST00000344229.7" ; transcript_name "RNF13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RNF13--ANKUB1 HAVANA gene 24056 35486 . + . FI_gene_label "ANKUB1^ENSG00000206199.11" ; ID "RNF13--ANKUB1^ANKUB1^ENSG00000206199.11" ; exon_id "ENSE00003803912.1" ; exon_number 1 ; gene_id "RNF13--ANKUB1^ANKUB1^ENSG00000206199.11" ; gene_name ANKUB1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159615.7" ; havana_transcript "OTTHUMT00000492332.2" ; hgnc_id "HGNC:29642" ; level 2 ; orig_coord_info "chr3,149792277,149792366,-" ; protein_id "ENSP00000387907.1" ; tag RNA_Seq_supported_partial basic MANE_Select appris_principal_4 ; transcript_id "RNF13--ANKUB1^ENST00000446160.7" ; transcript_name "ANKUB1-201" ; transcript_support_level 5 ; transcript_type protein_coding
RNF13--ANKUB1 HAVANA mRNA 24056 35486 . + . FI_gene_label "ANKUB1^ENSG00000206199.11" ; ID "RNF13--ANKUB1^ENST00000446160.7" ; Parent "RNF13--ANKUB1^ANKUB1^ENSG00000206199.11" ; exon_id "ENSE00003803912.1" ; exon_number 1 ; gene_id "RNF13--ANKUB1^ANKUB1^ENSG00000206199.11" ; gene_name ANKUB1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159615.7" ; havana_transcript "OTTHUMT00000492332.2" ; hgnc_id "HGNC:29642" ; level 2 ; orig_coord_info "chr3,149792277,149792366,-" ; protein_id "ENSP00000387907.1" ; tag RNA_Seq_supported_partial basic MANE_Select appris_principal_4 ; transcript_id "RNF13--ANKUB1^ENST00000446160.7" ; transcript_name "ANKUB1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
RNU6-1254P--FBN1 HAVANA gene 4117 74942 . + . FI_gene_label "FBN1^ENSG00000166147.14" ; ID "RNU6-1254P--FBN1^FBN1^ENSG00000166147.14" ; ccdsid "CCDS32232.1" ; exon_id "ENSE00002704173.1" ; exon_number 2 ; gene_id "RNU6-1254P--FBN1^FBN1^ENSG00000166147.14" ; gene_name FBN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172218.3" ; havana_transcript "OTTHUMT00000417355.3" ; hgnc_id "HGNC:3603" ; level 2 ; orig_coord_info "chr15,48644606,48644769,-" ; protein_id "ENSP00000325527.5" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 CCDS ; transcript_id "RNU6-1254P--FBN1^ENST00000316623.10" ; transcript_name "FBN1-201" ; transcript_support_level 1 ; transcript_type protein_coding
RNU6-1254P--FBN1 HAVANA mRNA 4117 74942 . + . FI_gene_label "FBN1^ENSG00000166147.14" ; ID "RNU6-1254P--FBN1^ENST00000316623.10" ; Parent "RNU6-1254P--FBN1^FBN1^ENSG00000166147.14" ; ccdsid "CCDS32232.1" ; exon_id "ENSE00002704173.1" ; exon_number 2 ; gene_id "RNU6-1254P--FBN1^FBN1^ENSG00000166147.14" ; gene_name FBN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172218.3" ; havana_transcript "OTTHUMT00000417355.3" ; hgnc_id "HGNC:3603" ; level 2 ; orig_coord_info "chr15,48644606,48644769,-" ; protein_id "ENSP00000325527.5" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 CCDS ; transcript_id "RNU6-1254P--FBN1^ENST00000316623.10" ; transcript_name "FBN1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RNU6-745P--CTDSPL2 HAVANA gene 4114 26720 . + . FI_gene_label "CTDSPL2^ENSG00000137770.14" ; ID "RNU6-745P--CTDSPL2^CTDSPL2^ENSG00000137770.14" ; ccdsid "CCDS10110.1" ; exon_id "ENSE00003657543.1" ; exon_number 2 ; gene_id "RNU6-745P--CTDSPL2^CTDSPL2^ENSG00000137770.14" ; gene_name CTDSPL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131159.4" ; havana_transcript "OTTHUMT00000253851.2" ; hgnc_id "HGNC:26936" ; level 2 ; orig_coord_info "chr15,44459015,44459200,+" ; protein_id "ENSP00000260327.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RNU6-745P--CTDSPL2^ENST00000260327.9" ; transcript_name "CTDSPL2-201" ; transcript_support_level 1 ; transcript_type protein_coding
RNU6-745P--CTDSPL2 HAVANA mRNA 4114 26720 . + . FI_gene_label "CTDSPL2^ENSG00000137770.14" ; ID "RNU6-745P--CTDSPL2^ENST00000260327.9" ; Parent "RNU6-745P--CTDSPL2^CTDSPL2^ENSG00000137770.14" ; ccdsid "CCDS10110.1" ; exon_id "ENSE00003657543.1" ; exon_number 2 ; gene_id "RNU6-745P--CTDSPL2^CTDSPL2^ENSG00000137770.14" ; gene_name CTDSPL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131159.4" ; havana_transcript "OTTHUMT00000253851.2" ; hgnc_id "HGNC:26936" ; level 2 ; orig_coord_info "chr15,44459015,44459200,+" ; protein_id "ENSP00000260327.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RNU6-745P--CTDSPL2^ENST00000260327.9" ; transcript_name "CTDSPL2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RPS15A--CCP110 HAVANA gene 1050 9822 . + . FI_gene_label "RPS15A^ENSG00000134419.15" ; ID "RPS15A--CCP110^RPS15A^ENSG00000134419.15" ; ccdsid "CCDS10571.1" ; exon_id "ENSE00003652333.1" ; exon_number 2 ; gene_id "RPS15A--CCP110^RPS15A^ENSG00000134419.15" ; gene_name RPS15A ; gene_type protein_coding ; havana_gene "OTTHUMG00000131365.6" ; havana_transcript "OTTHUMT00000254154.2" ; hgnc_id "HGNC:10389" ; level 2 ; orig_coord_info "chr16,18788981,18789113,-" ; protein_id "ENSP00000318646.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RPS15A--CCP110^ENST00000322989.8" ; transcript_name "RPS15A-201" ; transcript_support_level 1 ; transcript_type protein_coding
RPS15A--CCP110 HAVANA mRNA 1050 9822 . + . FI_gene_label "RPS15A^ENSG00000134419.15" ; ID "RPS15A--CCP110^ENST00000322989.8" ; Parent "RPS15A--CCP110^RPS15A^ENSG00000134419.15" ; ccdsid "CCDS10571.1" ; exon_id "ENSE00003652333.1" ; exon_number 2 ; gene_id "RPS15A--CCP110^RPS15A^ENSG00000134419.15" ; gene_name RPS15A ; gene_type protein_coding ; havana_gene "OTTHUMG00000131365.6" ; havana_transcript "OTTHUMT00000254154.2" ; hgnc_id "HGNC:10389" ; level 2 ; orig_coord_info "chr16,18788981,18789113,-" ; protein_id "ENSP00000318646.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RPS15A--CCP110^ENST00000322989.8" ; transcript_name "RPS15A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RPS15A--CCP110 HAVANA gene 12869 32076 . + . FI_gene_label "CCP110^ENSG00000103540.16" ; ID "RPS15A--CCP110^CCP110^ENSG00000103540.16" ; ccdsid "CCDS55992.1" ; exon_id "ENSE00001292632.2" ; exon_number 2 ; gene_id "RPS15A--CCP110^CCP110^ENSG00000103540.16" ; gene_name CCP110 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131459.6" ; havana_transcript "OTTHUMT00000254284.2" ; hgnc_id "HGNC:24342" ; level 2 ; orig_coord_info "chr16,19527882,19528022,+" ; protein_id "ENSP00000370803.5" ; tag basic appris_principal_4 CCDS ; transcript_id "RPS15A--CCP110^ENST00000381396.9" ; transcript_name "CCP110-201" ; transcript_support_level 1 ; transcript_type protein_coding
RPS15A--CCP110 HAVANA mRNA 12869 32076 . + . FI_gene_label "CCP110^ENSG00000103540.16" ; ID "RPS15A--CCP110^ENST00000381396.9" ; Parent "RPS15A--CCP110^CCP110^ENSG00000103540.16" ; ccdsid "CCDS55992.1" ; exon_id "ENSE00001292632.2" ; exon_number 2 ; gene_id "RPS15A--CCP110^CCP110^ENSG00000103540.16" ; gene_name CCP110 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131459.6" ; havana_transcript "OTTHUMT00000254284.2" ; hgnc_id "HGNC:24342" ; level 2 ; orig_coord_info "chr16,19527882,19528022,+" ; protein_id "ENSP00000370803.5" ; tag basic appris_principal_4 CCDS ; transcript_id "RPS15A--CCP110^ENST00000381396.9" ; transcript_name "CCP110-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SCARB2--CXCL11 HAVANA gene 2287 28906 . + . FI_gene_label "SCARB2^ENSG00000138760.10" ; ID "SCARB2--CXCL11^SCARB2^ENSG00000138760.10" ; ccdsid "CCDS3577.1" ; exon_id "ENSE00003803172.1" ; exon_number 1 ; gene_id "SCARB2--CXCL11^SCARB2^ENSG00000138760.10" ; gene_name SCARB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130099.7" ; havana_transcript "OTTHUMT00000252403.3" ; hgnc_id "HGNC:1665" ; level 2 ; orig_coord_info "chr4,76213427,76213543,-" ; protein_id "ENSP00000264896.2" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "SCARB2--CXCL11^ENST00000264896.8" ; transcript_name "SCARB2-201" ; transcript_support_level 1 ; transcript_type protein_coding
SCARB2--CXCL11 HAVANA mRNA 2287 28906 . + . FI_gene_label "SCARB2^ENSG00000138760.10" ; ID "SCARB2--CXCL11^ENST00000264896.8" ; Parent "SCARB2--CXCL11^SCARB2^ENSG00000138760.10" ; ccdsid "CCDS3577.1" ; exon_id "ENSE00003803172.1" ; exon_number 1 ; gene_id "SCARB2--CXCL11^SCARB2^ENSG00000138760.10" ; gene_name SCARB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130099.7" ; havana_transcript "OTTHUMT00000252403.3" ; hgnc_id "HGNC:1665" ; level 2 ; orig_coord_info "chr4,76213427,76213543,-" ; protein_id "ENSP00000264896.2" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "SCARB2--CXCL11^ENST00000264896.8" ; transcript_name "SCARB2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SCARB2--CXCL11 HAVANA gene 33209 35597 . + . FI_gene_label "CXCL11^ENSG00000169248.13" ; ID "SCARB2--CXCL11^CXCL11^ENSG00000169248.13" ; ccdsid "CCDS3574.1" ; exon_id "ENSE00001126440.4" ; exon_number 1 ; gene_id "SCARB2--CXCL11^CXCL11^ENSG00000169248.13" ; gene_name CXCL11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130101.5" ; havana_transcript "OTTHUMT00000252407.3" ; hgnc_id "HGNC:10638" ; level 2 ; orig_coord_info "chr4,76035927,76035987,-" ; protein_id "ENSP00000306884.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SCARB2--CXCL11^ENST00000306621.8" ; transcript_name "CXCL11-201" ; transcript_support_level 1 ; transcript_type protein_coding
SCARB2--CXCL11 HAVANA mRNA 33209 35597 . + . FI_gene_label "CXCL11^ENSG00000169248.13" ; ID "SCARB2--CXCL11^ENST00000306621.8" ; Parent "SCARB2--CXCL11^CXCL11^ENSG00000169248.13" ; ccdsid "CCDS3574.1" ; exon_id "ENSE00001126440.4" ; exon_number 1 ; gene_id "SCARB2--CXCL11^CXCL11^ENSG00000169248.13" ; gene_name CXCL11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130101.5" ; havana_transcript "OTTHUMT00000252407.3" ; hgnc_id "HGNC:10638" ; level 2 ; orig_coord_info "chr4,76035927,76035987,-" ; protein_id "ENSP00000306884.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SCARB2--CXCL11^ENST00000306621.8" ; transcript_name "CXCL11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SKAP1--EPHA1-AS1 HAVANA gene 1062 18023 . + . FI_gene_label "SKAP1^ENSG00000141293.16" ; ID "SKAP1--EPHA1-AS1^SKAP1^ENSG00000141293.16" ; ccdsid "CCDS32674.1" ; exon_id "ENSE00002733332.2" ; exon_number 1 ; gene_id "SKAP1--EPHA1-AS1^SKAP1^ENSG00000141293.16" ; gene_name SKAP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178823.3" ; havana_transcript "OTTHUMT00000443432.2" ; hgnc_id "HGNC:15605" ; level 2 ; orig_coord_info "chr17,48430075,48430120,-" ; protein_id "ENSP00000338171.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SKAP1--EPHA1-AS1^ENST00000336915.11" ; transcript_name "SKAP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
SKAP1--EPHA1-AS1 HAVANA mRNA 1062 18023 . + . FI_gene_label "SKAP1^ENSG00000141293.16" ; ID "SKAP1--EPHA1-AS1^ENST00000336915.11" ; Parent "SKAP1--EPHA1-AS1^SKAP1^ENSG00000141293.16" ; ccdsid "CCDS32674.1" ; exon_id "ENSE00002733332.2" ; exon_number 1 ; gene_id "SKAP1--EPHA1-AS1^SKAP1^ENSG00000141293.16" ; gene_name SKAP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178823.3" ; havana_transcript "OTTHUMT00000443432.2" ; hgnc_id "HGNC:15605" ; level 2 ; orig_coord_info "chr17,48430075,48430120,-" ; protein_id "ENSP00000338171.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SKAP1--EPHA1-AS1^ENST00000336915.11" ; transcript_name "SKAP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SLFN11--SLFN12 HAVANA gene 14962 22369 . + . FI_gene_label "SLFN12^ENSG00000172123.13" ; ID "SLFN11--SLFN12^SLFN12^ENSG00000172123.13" ; ccdsid "CCDS11295.1" ; exon_id "ENSE00001160241.4" ; exon_number 2 ; gene_id "SLFN11--SLFN12^SLFN12^ENSG00000172123.13" ; gene_name SLFN12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132952.3" ; havana_transcript "OTTHUMT00000256490.1" ; hgnc_id "HGNC:25500" ; level 2 ; orig_coord_info "chr17,35421990,35423028,-" ; protein_id "ENSP00000302077.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SLFN11--SLFN12^ENST00000304905.10" ; transcript_name "SLFN12-201" ; transcript_support_level 1 ; transcript_type protein_coding
SLFN11--SLFN12 HAVANA mRNA 14962 22369 . + . FI_gene_label "SLFN12^ENSG00000172123.13" ; ID "SLFN11--SLFN12^ENST00000304905.10" ; Parent "SLFN11--SLFN12^SLFN12^ENSG00000172123.13" ; ccdsid "CCDS11295.1" ; exon_id "ENSE00001160241.4" ; exon_number 2 ; gene_id "SLFN11--SLFN12^SLFN12^ENSG00000172123.13" ; gene_name SLFN12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132952.3" ; havana_transcript "OTTHUMT00000256490.1" ; hgnc_id "HGNC:25500" ; level 2 ; orig_coord_info "chr17,35421990,35423028,-" ; protein_id "ENSP00000302077.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SLFN11--SLFN12^ENST00000304905.10" ; transcript_name "SLFN12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SLFN11--SLFN12 HAVANA gene 1095 11178 . + . FI_gene_label "SLFN11^ENSG00000172716.16" ; ID "SLFN11--SLFN12^SLFN11^ENSG00000172716.16" ; ccdsid "CCDS11294.1" ; exon_id "ENSE00001186651.3" ; exon_number 2 ; gene_id "SLFN11--SLFN12^SLFN11^ENSG00000172716.16" ; gene_name SLFN11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132948.3" ; havana_transcript "OTTHUMT00000256481.1" ; hgnc_id "HGNC:26633" ; level 2 ; orig_coord_info "chr17,35362739,35363807,-" ; protein_id "ENSP00000312402.4" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "SLFN11--SLFN12^ENST00000308377.8" ; transcript_name "SLFN11-201" ; transcript_support_level 1 ; transcript_type protein_coding
SLFN11--SLFN12 HAVANA mRNA 1095 11178 . + . FI_gene_label "SLFN11^ENSG00000172716.16" ; ID "SLFN11--SLFN12^ENST00000308377.8" ; Parent "SLFN11--SLFN12^SLFN11^ENSG00000172716.16" ; ccdsid "CCDS11294.1" ; exon_id "ENSE00001186651.3" ; exon_number 2 ; gene_id "SLFN11--SLFN12^SLFN11^ENSG00000172716.16" ; gene_name SLFN11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132948.3" ; havana_transcript "OTTHUMT00000256481.1" ; hgnc_id "HGNC:26633" ; level 2 ; orig_coord_info "chr17,35362739,35363807,-" ; protein_id "ENSP00000312402.4" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "SLFN11--SLFN12^ENST00000308377.8" ; transcript_name "SLFN11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SNUPN--MTSS1 HAVANA gene 1745 12986 . + . FI_gene_label "SNUPN^ENSG00000169371.14" ; ID "SNUPN--MTSS1^SNUPN^ENSG00000169371.14" ; ccdsid "CCDS10281.1" ; exon_id "ENSE00003561820.1" ; exon_number 2 ; gene_id "SNUPN--MTSS1^SNUPN^ENSG00000169371.14" ; gene_name SNUPN ; gene_type protein_coding ; havana_gene "OTTHUMG00000142833.6" ; havana_transcript "OTTHUMT00000286468.2" ; hgnc_id "HGNC:14245" ; level 2 ; orig_coord_info "chr15,75620894,75621051,-" ; protein_id "ENSP00000309831.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SNUPN--MTSS1^ENST00000308588.10" ; transcript_name "SNUPN-201" ; transcript_support_level 1 ; transcript_type protein_coding
SNUPN--MTSS1 HAVANA mRNA 1745 12986 . + . FI_gene_label "SNUPN^ENSG00000169371.14" ; ID "SNUPN--MTSS1^ENST00000308588.10" ; Parent "SNUPN--MTSS1^SNUPN^ENSG00000169371.14" ; ccdsid "CCDS10281.1" ; exon_id "ENSE00003561820.1" ; exon_number 2 ; gene_id "SNUPN--MTSS1^SNUPN^ENSG00000169371.14" ; gene_name SNUPN ; gene_type protein_coding ; havana_gene "OTTHUMG00000142833.6" ; havana_transcript "OTTHUMT00000286468.2" ; hgnc_id "HGNC:14245" ; level 2 ; orig_coord_info "chr15,75620894,75621051,-" ; protein_id "ENSP00000309831.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SNUPN--MTSS1^ENST00000308588.10" ; transcript_name "SNUPN-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SNUPN--MTSS1 HAVANA gene 16190 39726 . + . FI_gene_label "MTSS1^ENSG00000170873.19" ; ID "SNUPN--MTSS1^MTSS1^ENSG00000170873.19" ; ccdsid "CCDS64969.1" ; exon_id "ENSE00002313690.1" ; exon_number 1 ; gene_id "SNUPN--MTSS1^MTSS1^ENSG00000170873.19" ; gene_name MTSS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000048189.5" ; havana_transcript "OTTHUMT00000381615.1" ; hgnc_id "HGNC:20443" ; level 2 ; orig_coord_info "chr8,124727884,124727955,-" ; protein_id "ENSP00000322804.5" ; tag basic appris_alternative_1 CCDS ; transcript_id "SNUPN--MTSS1^ENST00000325064.9" ; transcript_name "MTSS1-201" ; transcript_support_level 2 ; transcript_type protein_coding
SNUPN--MTSS1 HAVANA mRNA 16190 39726 . + . FI_gene_label "MTSS1^ENSG00000170873.19" ; ID "SNUPN--MTSS1^ENST00000325064.9" ; Parent "SNUPN--MTSS1^MTSS1^ENSG00000170873.19" ; ccdsid "CCDS64969.1" ; exon_id "ENSE00002313690.1" ; exon_number 1 ; gene_id "SNUPN--MTSS1^MTSS1^ENSG00000170873.19" ; gene_name MTSS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000048189.5" ; havana_transcript "OTTHUMT00000381615.1" ; hgnc_id "HGNC:20443" ; level 2 ; orig_coord_info "chr8,124727884,124727955,-" ; protein_id "ENSP00000322804.5" ; tag basic appris_alternative_1 CCDS ; transcript_id "SNUPN--MTSS1^ENST00000325064.9" ; transcript_name "MTSS1-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
SNX24--PRDM6 HAVANA gene 3175 17336 . + . FI_gene_label "SNX24^ENSG00000064652.11" ; ID "SNX24--PRDM6^SNX24^ENSG00000064652.11" ; ccdsid "CCDS4132.1" ; exon_id "ENSE00002051567.2" ; exon_number 1 ; gene_id "SNX24--PRDM6^SNX24^ENSG00000064652.11" ; gene_name SNX24 ; gene_type protein_coding ; havana_gene "OTTHUMG00000128913.3" ; havana_transcript "OTTHUMT00000250885.3" ; hgnc_id "HGNC:21533" ; level 2 ; orig_coord_info "chr5,122845634,122845693,+" ; protein_id "ENSP00000261369.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SNX24--PRDM6^ENST00000261369.9" ; transcript_name "SNX24-201" ; transcript_support_level 1 ; transcript_type protein_coding
SNX24--PRDM6 HAVANA mRNA 3175 17336 . + . FI_gene_label "SNX24^ENSG00000064652.11" ; ID "SNX24--PRDM6^ENST00000261369.9" ; Parent "SNX24--PRDM6^SNX24^ENSG00000064652.11" ; ccdsid "CCDS4132.1" ; exon_id "ENSE00002051567.2" ; exon_number 1 ; gene_id "SNX24--PRDM6^SNX24^ENSG00000064652.11" ; gene_name SNX24 ; gene_type protein_coding ; havana_gene "OTTHUMG00000128913.3" ; havana_transcript "OTTHUMT00000250885.3" ; hgnc_id "HGNC:21533" ; level 2 ; orig_coord_info "chr5,122845634,122845693,+" ; protein_id "ENSP00000261369.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SNX24--PRDM6^ENST00000261369.9" ; transcript_name "SNX24-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SNX24--PRDM6 HAVANA gene 22575 39284 . + . FI_gene_label "PRDM6^ENSG00000061455.11" ; ID "SNX24--PRDM6^PRDM6^ENSG00000061455.11" ; ccdsid "CCDS47259.1" ; exon_id "ENSE00001558416.1" ; exon_number 2 ; gene_id "SNX24--PRDM6^PRDM6^ENSG00000061455.11" ; gene_name PRDM6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150469.4" ; havana_transcript "OTTHUMT00000318226.3" ; hgnc_id "HGNC:9350" ; level 2 ; orig_coord_info "chr5,123090015,123090606,+" ; protein_id "ENSP00000384725.3" ; tag not_organism_supported basic MANE_Select appris_principal_1 CCDS ; transcript_id "SNX24--PRDM6^ENST00000407847.5" ; transcript_name "PRDM6-201" ; transcript_support_level 5 ; transcript_type protein_coding
SNX24--PRDM6 HAVANA mRNA 22575 39284 . + . FI_gene_label "PRDM6^ENSG00000061455.11" ; ID "SNX24--PRDM6^ENST00000407847.5" ; Parent "SNX24--PRDM6^PRDM6^ENSG00000061455.11" ; ccdsid "CCDS47259.1" ; exon_id "ENSE00001558416.1" ; exon_number 2 ; gene_id "SNX24--PRDM6^PRDM6^ENSG00000061455.11" ; gene_name PRDM6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150469.4" ; havana_transcript "OTTHUMT00000318226.3" ; hgnc_id "HGNC:9350" ; level 2 ; orig_coord_info "chr5,123090015,123090606,+" ; protein_id "ENSP00000384725.3" ; tag not_organism_supported basic MANE_Select appris_principal_1 CCDS ; transcript_id "SNX24--PRDM6^ENST00000407847.5" ; transcript_name "PRDM6-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
SORD--AC009558.1 HAVANA gene 1049 19200 . + . FI_gene_label "SORD^ENSG00000140263.15" ; ID "SORD--AC009558.1^SORD^ENSG00000140263.15" ; ccdsid "CCDS10116.1" ; exon_id "ENSE00002548215.1" ; exon_number 1 ; gene_id "SORD--AC009558.1^SORD^ENSG00000140263.15" ; gene_name SORD ; gene_type protein_coding ; havana_gene "OTTHUMG00000131265.12" ; havana_transcript "OTTHUMT00000254033.4" ; hgnc_id "HGNC:11184" ; level 2 ; orig_coord_info "chr15,45023284,45023349,+" ; protein_id "ENSP00000267814.9" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SORD--AC009558.1^ENST00000267814.14" ; transcript_name "SORD-201" ; transcript_support_level 1 ; transcript_type protein_coding
SORD--AC009558.1 HAVANA mRNA 1049 19200 . + . FI_gene_label "SORD^ENSG00000140263.15" ; ID "SORD--AC009558.1^ENST00000267814.14" ; Parent "SORD--AC009558.1^SORD^ENSG00000140263.15" ; ccdsid "CCDS10116.1" ; exon_id "ENSE00002548215.1" ; exon_number 1 ; gene_id "SORD--AC009558.1^SORD^ENSG00000140263.15" ; gene_name SORD ; gene_type protein_coding ; havana_gene "OTTHUMG00000131265.12" ; havana_transcript "OTTHUMT00000254033.4" ; hgnc_id "HGNC:11184" ; level 2 ; orig_coord_info "chr15,45023284,45023349,+" ; protein_id "ENSP00000267814.9" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SORD--AC009558.1^ENST00000267814.14" ; transcript_name "SORD-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SORD--SEMA6D HAVANA gene 1049 19200 . + . FI_gene_label "SORD^ENSG00000140263.15" ; ID "SORD--SEMA6D^SORD^ENSG00000140263.15" ; ccdsid "CCDS10116.1" ; exon_id "ENSE00002548215.1" ; exon_number 1 ; gene_id "SORD--SEMA6D^SORD^ENSG00000140263.15" ; gene_name SORD ; gene_type protein_coding ; havana_gene "OTTHUMG00000131265.12" ; havana_transcript "OTTHUMT00000254033.4" ; hgnc_id "HGNC:11184" ; level 2 ; orig_coord_info "chr15,45023284,45023349,+" ; protein_id "ENSP00000267814.9" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SORD--SEMA6D^ENST00000267814.14" ; transcript_name "SORD-201" ; transcript_support_level 1 ; transcript_type protein_coding
SORD--SEMA6D HAVANA mRNA 1049 19200 . + . FI_gene_label "SORD^ENSG00000140263.15" ; ID "SORD--SEMA6D^ENST00000267814.14" ; Parent "SORD--SEMA6D^SORD^ENSG00000140263.15" ; ccdsid "CCDS10116.1" ; exon_id "ENSE00002548215.1" ; exon_number 1 ; gene_id "SORD--SEMA6D^SORD^ENSG00000140263.15" ; gene_name SORD ; gene_type protein_coding ; havana_gene "OTTHUMG00000131265.12" ; havana_transcript "OTTHUMT00000254033.4" ; hgnc_id "HGNC:11184" ; level 2 ; orig_coord_info "chr15,45023284,45023349,+" ; protein_id "ENSP00000267814.9" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SORD--SEMA6D^ENST00000267814.14" ; transcript_name "SORD-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SORD--SEMA6D HAVANA gene 32672 47744 . + . FI_gene_label "SEMA6D^ENSG00000137872.17" ; ID "SORD--SEMA6D^SEMA6D^ENSG00000137872.17" ; ccdsid "CCDS32225.1" ; exon_id "ENSE00001216682.4" ; exon_number 2 ; gene_id "SORD--SEMA6D^SEMA6D^ENSG00000137872.17" ; gene_name SEMA6D ; gene_type protein_coding ; havana_gene "OTTHUMG00000172110.3" ; havana_transcript "OTTHUMT00000416868.1" ; hgnc_id "HGNC:16770" ; level 2 ; orig_coord_info "chr15,47759799,47759907,+" ; protein_id "ENSP00000324857.5" ; tag alternative_5_UTR basic appris_principal_4 CCDS ; transcript_id "SORD--SEMA6D^ENST00000316364.9" ; transcript_name "SEMA6D-201" ; transcript_support_level 1 ; transcript_type protein_coding
SORD--SEMA6D HAVANA mRNA 32672 47744 . + . FI_gene_label "SEMA6D^ENSG00000137872.17" ; ID "SORD--SEMA6D^ENST00000316364.9" ; Parent "SORD--SEMA6D^SEMA6D^ENSG00000137872.17" ; ccdsid "CCDS32225.1" ; exon_id "ENSE00001216682.4" ; exon_number 2 ; gene_id "SORD--SEMA6D^SEMA6D^ENSG00000137872.17" ; gene_name SEMA6D ; gene_type protein_coding ; havana_gene "OTTHUMG00000172110.3" ; havana_transcript "OTTHUMT00000416868.1" ; hgnc_id "HGNC:16770" ; level 2 ; orig_coord_info "chr15,47759799,47759907,+" ; protein_id "ENSP00000324857.5" ; tag alternative_5_UTR basic appris_principal_4 CCDS ; transcript_id "SORD--SEMA6D^ENST00000316364.9" ; transcript_name "SEMA6D-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SQOR--LINC02055 HAVANA gene 3181 15056 . + . FI_gene_label "SQOR^ENSG00000137767.14" ; ID "SQOR--LINC02055^SQOR^ENSG00000137767.14" ; ccdsid "CCDS10127.1" ; exon_id "ENSE00003488246.1" ; exon_number 2 ; gene_id "SQOR--LINC02055^SQOR^ENSG00000137767.14" ; gene_name SQOR ; gene_type protein_coding ; havana_gene "OTTHUMG00000131476.5" ; havana_transcript "OTTHUMT00000254319.3" ; hgnc_id "HGNC:20390" ; level 2 ; orig_coord_info "chr15,45658924,45659157,+" ; protein_id "ENSP00000260324.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SQOR--LINC02055^ENST00000260324.12" ; transcript_name "SQOR-201" ; transcript_support_level 1 ; transcript_type protein_coding
SQOR--LINC02055 HAVANA mRNA 3181 15056 . + . FI_gene_label "SQOR^ENSG00000137767.14" ; ID "SQOR--LINC02055^ENST00000260324.12" ; Parent "SQOR--LINC02055^SQOR^ENSG00000137767.14" ; ccdsid "CCDS10127.1" ; exon_id "ENSE00003488246.1" ; exon_number 2 ; gene_id "SQOR--LINC02055^SQOR^ENSG00000137767.14" ; gene_name SQOR ; gene_type protein_coding ; havana_gene "OTTHUMG00000131476.5" ; havana_transcript "OTTHUMT00000254319.3" ; hgnc_id "HGNC:20390" ; level 2 ; orig_coord_info "chr15,45658924,45659157,+" ; protein_id "ENSP00000260324.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SQOR--LINC02055^ENST00000260324.12" ; transcript_name "SQOR-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TLE3--CTDSPL2 HAVANA gene 26488 49094 . + . FI_gene_label "CTDSPL2^ENSG00000137770.14" ; ID "TLE3--CTDSPL2^CTDSPL2^ENSG00000137770.14" ; ccdsid "CCDS10110.1" ; exon_id "ENSE00003657543.1" ; exon_number 2 ; gene_id "TLE3--CTDSPL2^CTDSPL2^ENSG00000137770.14" ; gene_name CTDSPL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131159.4" ; havana_transcript "OTTHUMT00000253851.2" ; hgnc_id "HGNC:26936" ; level 2 ; orig_coord_info "chr15,44459015,44459200,+" ; protein_id "ENSP00000260327.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TLE3--CTDSPL2^ENST00000260327.9" ; transcript_name "CTDSPL2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TLE3--CTDSPL2 HAVANA mRNA 26488 49094 . + . FI_gene_label "CTDSPL2^ENSG00000137770.14" ; ID "TLE3--CTDSPL2^ENST00000260327.9" ; Parent "TLE3--CTDSPL2^CTDSPL2^ENSG00000137770.14" ; ccdsid "CCDS10110.1" ; exon_id "ENSE00003657543.1" ; exon_number 2 ; gene_id "TLE3--CTDSPL2^CTDSPL2^ENSG00000137770.14" ; gene_name CTDSPL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131159.4" ; havana_transcript "OTTHUMT00000253851.2" ; hgnc_id "HGNC:26936" ; level 2 ; orig_coord_info "chr15,44459015,44459200,+" ; protein_id "ENSP00000260327.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TLE3--CTDSPL2^ENST00000260327.9" ; transcript_name "CTDSPL2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TLE3--CTDSPL2 HAVANA gene 1277 22995 . + . FI_gene_label "TLE3^ENSG00000140332.17" ; ID "TLE3--CTDSPL2^TLE3^ENSG00000140332.17" ; ccdsid "CCDS58375.1" ; exon_id "ENSE00002540418.1" ; exon_number 1 ; gene_id "TLE3--CTDSPL2^TLE3^ENSG00000140332.17" ; gene_name TLE3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172121.5" ; havana_transcript "OTTHUMT00000416914.1" ; hgnc_id "HGNC:11839" ; level 2 ; orig_coord_info "chr15,70096775,70096798,-" ; protein_id "ENSP00000319233.8" ; tag basic CCDS ; transcript_id "TLE3--CTDSPL2^ENST00000317509.12" ; transcript_name "TLE3-201" ; transcript_support_level 1 ; transcript_type protein_coding
TLE3--CTDSPL2 HAVANA mRNA 1277 22995 . + . FI_gene_label "TLE3^ENSG00000140332.17" ; ID "TLE3--CTDSPL2^ENST00000317509.12" ; Parent "TLE3--CTDSPL2^TLE3^ENSG00000140332.17" ; ccdsid "CCDS58375.1" ; exon_id "ENSE00002540418.1" ; exon_number 1 ; gene_id "TLE3--CTDSPL2^TLE3^ENSG00000140332.17" ; gene_name TLE3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172121.5" ; havana_transcript "OTTHUMT00000416914.1" ; hgnc_id "HGNC:11839" ; level 2 ; orig_coord_info "chr15,70096775,70096798,-" ; protein_id "ENSP00000319233.8" ; tag basic CCDS ; transcript_id "TLE3--CTDSPL2^ENST00000317509.12" ; transcript_name "TLE3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TLK2--AC240565.1 HAVANA mRNA 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^ENST00000326270.13" ; Parent "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
UBE2Q2P1--GOLGA6L10 HAVANA gene 16591 25371 . + . FI_gene_label "GOLGA6L10^ENSG00000278662.5" ; ID "UBE2Q2P1--GOLGA6L10^GOLGA6L10^ENSG00000278662.5" ; ccdsid "CCDS45325.2" ; exon_id "ENSE00002255247.2" ; exon_number 1 ; gene_id "UBE2Q2P1--GOLGA6L10^GOLGA6L10^ENSG00000278662.5" ; gene_name GOLGA6L10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172580.4" ; havana_transcript "OTTHUMT00000419277.4" ; hgnc_id "HGNC:37228" ; level 2 ; orig_coord_info "chr15,82349292,82349375,-" ; protein_id "ENSP00000479362.1" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "UBE2Q2P1--GOLGA6L10^ENST00000610657.2" ; transcript_name "GOLGA6L10-207" ; transcript_support_level 2 ; transcript_type protein_coding
UBE2Q2P1--GOLGA6L10 HAVANA mRNA 16591 25371 . + . FI_gene_label "GOLGA6L10^ENSG00000278662.5" ; ID "UBE2Q2P1--GOLGA6L10^ENST00000610657.2" ; Parent "UBE2Q2P1--GOLGA6L10^GOLGA6L10^ENSG00000278662.5" ; ccdsid "CCDS45325.2" ; exon_id "ENSE00002255247.2" ; exon_number 1 ; gene_id "UBE2Q2P1--GOLGA6L10^GOLGA6L10^ENSG00000278662.5" ; gene_name GOLGA6L10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172580.4" ; havana_transcript "OTTHUMT00000419277.4" ; hgnc_id "HGNC:37228" ; level 2 ; orig_coord_info "chr15,82349292,82349375,-" ; protein_id "ENSP00000479362.1" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "UBE2Q2P1--GOLGA6L10^ENST00000610657.2" ; transcript_name "GOLGA6L10-207" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
USP3--AC019294.2 ENSEMBL gene 4685 28031 . + . FI_gene_label "USP3^ENSG00000140455.17" ; ID "USP3--AC019294.2^USP3^ENSG00000140455.17" ; exon_id "ENSE00003718945.1" ; exon_number 1 ; gene_id "USP3--AC019294.2^USP3^ENSG00000140455.17" ; gene_name USP3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172309.4" ; hgnc_id "HGNC:12626" ; level 3 ; orig_coord_info "chr15,63529142,63529166,+" ; protein_id "ENSP00000268049.7" ; tag basic ; transcript_id "USP3--AC019294.2^ENST00000268049.11" ; transcript_name "USP3-201" ; transcript_support_level 5 ; transcript_type protein_coding
USP3--AC019294.2 ENSEMBL mRNA 4685 28031 . + . FI_gene_label "USP3^ENSG00000140455.17" ; ID "USP3--AC019294.2^ENST00000268049.11" ; Parent "USP3--AC019294.2^USP3^ENSG00000140455.17" ; exon_id "ENSE00003718945.1" ; exon_number 1 ; gene_id "USP3--AC019294.2^USP3^ENSG00000140455.17" ; gene_name USP3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172309.4" ; hgnc_id "HGNC:12626" ; level 3 ; orig_coord_info "chr15,63529142,63529166,+" ; protein_id "ENSP00000268049.7" ; tag basic ; transcript_id "USP3--AC019294.2^ENST00000268049.11" ; transcript_name "USP3-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
VKORC1L1--AC090517.5 HAVANA gene 1001 9087 . + . FI_gene_label "VKORC1L1^ENSG00000196715.7" ; ID "VKORC1L1--AC090517.5^VKORC1L1^ENSG00000196715.7" ; ccdsid "CCDS5529.1" ; exon_id "ENSE00003846291.1" ; exon_number 1 ; gene_id "VKORC1L1--AC090517.5^VKORC1L1^ENSG00000196715.7" ; gene_name VKORC1L1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129449.5" ; havana_transcript "OTTHUMT00000251612.5" ; hgnc_id "HGNC:21492" ; level 2 ; orig_coord_info "chr7,65873372,65873565,+" ; protein_id "ENSP00000353998.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "VKORC1L1--AC090517.5^ENST00000360768.5" ; transcript_name "VKORC1L1-201" ; transcript_support_level 1 ; transcript_type protein_coding
VKORC1L1--AC090517.5 HAVANA mRNA 1001 9087 . + . FI_gene_label "VKORC1L1^ENSG00000196715.7" ; ID "VKORC1L1--AC090517.5^ENST00000360768.5" ; Parent "VKORC1L1--AC090517.5^VKORC1L1^ENSG00000196715.7" ; ccdsid "CCDS5529.1" ; exon_id "ENSE00003846291.1" ; exon_number 1 ; gene_id "VKORC1L1--AC090517.5^VKORC1L1^ENSG00000196715.7" ; gene_name VKORC1L1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129449.5" ; havana_transcript "OTTHUMT00000251612.5" ; hgnc_id "HGNC:21492" ; level 2 ; orig_coord_info "chr7,65873372,65873565,+" ; protein_id "ENSP00000353998.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "VKORC1L1--AC090517.5^ENST00000360768.5" ; transcript_name "VKORC1L1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZNF229--AL357052.1 HAVANA gene 1118 4556 . + . FI_gene_label "ZNF229^ENSG00000278318.5" ; ID "ZNF229--AL357052.1^ZNF229^ENSG00000278318.5" ; exon_id "ENSE00003615989.1" ; exon_number 4 ; gene_id "ZNF229--AL357052.1^ZNF229^ENSG00000278318.5" ; gene_name ZNF229 ; gene_type protein_coding ; havana_gene "OTTHUMG00000182377.5" ; havana_transcript "OTTHUMT00000460834.3" ; hgnc_id "HGNC:13022" ; level 2 ; orig_coord_info "chr19,44442563,44442571,-" ; protein_id "ENSP00000464902.1" ; tag mRNA_end_NF cds_end_NF ; transcript_id "ZNF229--AL357052.1^ENST00000592308.1" ; transcript_name "ZNF229-202" ; transcript_support_level 4 ; transcript_type protein_coding
ZNF229--AL357052.1 HAVANA mRNA 1118 4556 . + . FI_gene_label "ZNF229^ENSG00000278318.5" ; ID "ZNF229--AL357052.1^ENST00000592308.1" ; Parent "ZNF229--AL357052.1^ZNF229^ENSG00000278318.5" ; exon_id "ENSE00003615989.1" ; exon_number 4 ; gene_id "ZNF229--AL357052.1^ZNF229^ENSG00000278318.5" ; gene_name ZNF229 ; gene_type protein_coding ; havana_gene "OTTHUMG00000182377.5" ; havana_transcript "OTTHUMT00000460834.3" ; hgnc_id "HGNC:13022" ; level 2 ; orig_coord_info "chr19,44442563,44442571,-" ; protein_id "ENSP00000464902.1" ; tag mRNA_end_NF cds_end_NF ; transcript_id "ZNF229--AL357052.1^ENST00000592308.1" ; transcript_name "ZNF229-202" ; transcript_support_level 4 ; transcript_type protein_coding
L1 and L2 created:
ZNF566--FP671120.8 HAVANA gene 1342 9009 . + . FI_gene_label "ZNF566^ENSG00000186017.14" ; ID "ZNF566--FP671120.8^ZNF566^ENSG00000186017.14" ; ccdsid "CCDS46061.1" ; exon_id "ENSE00003668658.1" ; exon_number 2 ; gene_id "ZNF566--FP671120.8^ZNF566^ENSG00000186017.14" ; gene_name ZNF566 ; gene_type protein_coding ; havana_gene "OTTHUMG00000048148.4" ; havana_transcript "OTTHUMT00000109555.2" ; hgnc_id "HGNC:25919" ; level 2 ; orig_coord_info "chr19,36476549,36476557,-" ; protein_id "ENSP00000376010.2" ; tag basic appris_principal_4 CCDS ; transcript_id "ZNF566--FP671120.8^ENST00000392170.6" ; transcript_name "ZNF566-201" ; transcript_support_level 5 ; transcript_type protein_coding
ZNF566--FP671120.8 HAVANA mRNA 1342 9009 . + . FI_gene_label "ZNF566^ENSG00000186017.14" ; ID "ZNF566--FP671120.8^ENST00000392170.6" ; Parent "ZNF566--FP671120.8^ZNF566^ENSG00000186017.14" ; ccdsid "CCDS46061.1" ; exon_id "ENSE00003668658.1" ; exon_number 2 ; gene_id "ZNF566--FP671120.8^ZNF566^ENSG00000186017.14" ; gene_name ZNF566 ; gene_type protein_coding ; havana_gene "OTTHUMG00000048148.4" ; havana_transcript "OTTHUMT00000109555.2" ; hgnc_id "HGNC:25919" ; level 2 ; orig_coord_info "chr19,36476549,36476557,-" ; protein_id "ENSP00000376010.2" ; tag basic appris_principal_4 CCDS ; transcript_id "ZNF566--FP671120.8^ENST00000392170.6" ; transcript_name "ZNF566-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
ZNF566--MIR6724-2 HAVANA gene 1342 9009 . + . FI_gene_label "ZNF566^ENSG00000186017.14" ; ID "ZNF566--MIR6724-2^ZNF566^ENSG00000186017.14" ; ccdsid "CCDS46061.1" ; exon_id "ENSE00003668658.1" ; exon_number 2 ; gene_id "ZNF566--MIR6724-2^ZNF566^ENSG00000186017.14" ; gene_name ZNF566 ; gene_type protein_coding ; havana_gene "OTTHUMG00000048148.4" ; havana_transcript "OTTHUMT00000109555.2" ; hgnc_id "HGNC:25919" ; level 2 ; orig_coord_info "chr19,36476549,36476557,-" ; protein_id "ENSP00000376010.2" ; tag basic appris_principal_4 CCDS ; transcript_id "ZNF566--MIR6724-2^ENST00000392170.6" ; transcript_name "ZNF566-201" ; transcript_support_level 5 ; transcript_type protein_coding
ZNF566--MIR6724-2 HAVANA mRNA 1342 9009 . + . FI_gene_label "ZNF566^ENSG00000186017.14" ; ID "ZNF566--MIR6724-2^ENST00000392170.6" ; Parent "ZNF566--MIR6724-2^ZNF566^ENSG00000186017.14" ; ccdsid "CCDS46061.1" ; exon_id "ENSE00003668658.1" ; exon_number 2 ; gene_id "ZNF566--MIR6724-2^ZNF566^ENSG00000186017.14" ; gene_name ZNF566 ; gene_type protein_coding ; havana_gene "OTTHUMG00000048148.4" ; havana_transcript "OTTHUMT00000109555.2" ; hgnc_id "HGNC:25919" ; level 2 ; orig_coord_info "chr19,36476549,36476557,-" ; protein_id "ENSP00000376010.2" ; tag basic appris_principal_4 CCDS ; transcript_id "ZNF566--MIR6724-2^ENST00000392170.6" ; transcript_name "ZNF566-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
AC009432.1--IQCH HAVANA gene 1001 1808 . + . FI_gene_label "AC009432.1^ENSG00000259331.1" ; ID "AC009432.1--IQCH^AC009432.1^ENSG00000259331.1" ; exon_id "ENSE00002562562.1" ; exon_number 1 ; gene_id "AC009432.1--IQCH^AC009432.1^ENSG00000259331.1" ; gene_name "AC009432.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000172481.1" ; havana_transcript "OTTHUMT00000418734.1" ; level 2 ; orig_coord_info "chr15,94600014,94600601,+" ; tag basic ; transcript_id "AC009432.1--IQCH^ENST00000560391.1" ; transcript_name "AC009432.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
AC009432.1--IQCH HAVANA RNA 1001 1808 . + . FI_gene_label "AC009432.1^ENSG00000259331.1" ; ID "AC009432.1--IQCH^ENST00000560391.1" ; Parent "AC009432.1--IQCH^AC009432.1^ENSG00000259331.1" ; exon_id "ENSE00002562562.1" ; exon_number 1 ; gene_id "AC009432.1--IQCH^AC009432.1^ENSG00000259331.1" ; gene_name "AC009432.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000172481.1" ; havana_transcript "OTTHUMT00000418734.1" ; level 2 ; orig_coord_info "chr15,94600014,94600601,+" ; tag basic ; transcript_id "AC009432.1--IQCH^ENST00000560391.1" ; transcript_name "AC009432.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
AC009432.2--IQCH HAVANA gene 1001 4486 . + . FI_gene_label "AC009432.2^ENSG00000287950.1" ; ID "AC009432.2--IQCH^AC009432.2^ENSG00000287950.1" ; exon_id "ENSE00003869771.1" ; exon_number 1 ; gene_id "AC009432.2--IQCH^AC009432.2^ENSG00000287950.1" ; gene_name "AC009432.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000195368.1" ; havana_transcript "OTTHUMT00000526647.1" ; level 2 ; orig_coord_info "chr15,94550404,94550572,-" ; tag basic TAGENE ; transcript_id "AC009432.2--IQCH^ENST00000658115.1" ; transcript_name "AC009432.2-201" ; transcript_type lncRNA
AC009432.2--IQCH HAVANA RNA 1001 4486 . + . FI_gene_label "AC009432.2^ENSG00000287950.1" ; ID "AC009432.2--IQCH^ENST00000658115.1" ; Parent "AC009432.2--IQCH^AC009432.2^ENSG00000287950.1" ; exon_id "ENSE00003869771.1" ; exon_number 1 ; gene_id "AC009432.2--IQCH^AC009432.2^ENSG00000287950.1" ; gene_name "AC009432.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000195368.1" ; havana_transcript "OTTHUMT00000526647.1" ; level 2 ; orig_coord_info "chr15,94550404,94550572,-" ; tag basic TAGENE ; transcript_id "AC009432.2--IQCH^ENST00000658115.1" ; transcript_name "AC009432.2-201" ; transcript_type lncRNA
L1 and L2 created:
AC022308.1--IQCH HAVANA gene 1001 2436 . + . FI_gene_label "AC022308.1^ENSG00000286917.1" ; ID "AC022308.1--IQCH^AC022308.1^ENSG00000286917.1" ; exon_id "ENSE00003853368.1" ; exon_number 1 ; gene_id "AC022308.1--IQCH^AC022308.1^ENSG00000286917.1" ; gene_name "AC022308.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000194625.1" ; havana_transcript "OTTHUMT00000520027.1" ; level 2 ; orig_coord_info "chr15,94726460,94726519,-" ; tag basic TAGENE ; transcript_id "AC022308.1--IQCH^ENST00000661370.1" ; transcript_name "AC022308.1-201" ; transcript_type lncRNA
AC022308.1--IQCH HAVANA RNA 1001 2436 . + . FI_gene_label "AC022308.1^ENSG00000286917.1" ; ID "AC022308.1--IQCH^ENST00000661370.1" ; Parent "AC022308.1--IQCH^AC022308.1^ENSG00000286917.1" ; exon_id "ENSE00003853368.1" ; exon_number 1 ; gene_id "AC022308.1--IQCH^AC022308.1^ENSG00000286917.1" ; gene_name "AC022308.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000194625.1" ; havana_transcript "OTTHUMT00000520027.1" ; level 2 ; orig_coord_info "chr15,94726460,94726519,-" ; tag basic TAGENE ; transcript_id "AC022308.1--IQCH^ENST00000661370.1" ; transcript_name "AC022308.1-201" ; transcript_type lncRNA
L1 and L2 created:
AC092807.3--DDAH1 HAVANA gene 1101 8302 . + . FI_gene_label "AC092807.3^ENSG00000282057.1" ; ID "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; exon_id "ENSE00001891111.1" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; gene_name "AC092807.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000010578.6" ; havana_transcript "OTTHUMT00000029193.2" ; level 2 ; orig_coord_info "chr1,85577984,85578150,-" ; tag basic ; transcript_id "AC092807.3--DDAH1^ENST00000467530.5" ; transcript_name "AC092807.3-203" ; transcript_support_level 2 ; transcript_type lncRNA
AC092807.3--DDAH1 HAVANA RNA 1101 8302 . + . FI_gene_label "AC092807.3^ENSG00000282057.1" ; ID "AC092807.3--DDAH1^ENST00000467530.5" ; Parent "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; exon_id "ENSE00001891111.1" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; gene_name "AC092807.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000010578.6" ; havana_transcript "OTTHUMT00000029193.2" ; level 2 ; orig_coord_info "chr1,85577984,85578150,-" ; tag basic ; transcript_id "AC092807.3--DDAH1^ENST00000467530.5" ; transcript_name "AC092807.3-203" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
AC136431.1--PKD1P5 HAVANA gene 9015 30646 . + . FI_gene_label "PKD1P5^ENSG00000254681.6" ; ID "AC136431.1--PKD1P5^PKD1P5^ENSG00000254681.6" ; exon_id "ENSE00002185250.1" ; exon_number 1 ; gene_id "AC136431.1--PKD1P5^PKD1P5^ENSG00000254681.6" ; gene_name PKD1P5 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000166287.2" ; havana_transcript "OTTHUMT00000388923.1" ; hgnc_id "HGNC:30069" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr16,18401584,18401940,-" ; tag basic ; transcript_id "AC136431.1--PKD1P5^ENST00000532415.5" ; transcript_name "PKD1P5-201" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
AC136431.1--PKD1P5 HAVANA RNA 9015 30646 . + . FI_gene_label "PKD1P5^ENSG00000254681.6" ; ID "AC136431.1--PKD1P5^ENST00000532415.5" ; Parent "AC136431.1--PKD1P5^PKD1P5^ENSG00000254681.6" ; exon_id "ENSE00002185250.1" ; exon_number 1 ; gene_id "AC136431.1--PKD1P5^PKD1P5^ENSG00000254681.6" ; gene_name PKD1P5 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000166287.2" ; havana_transcript "OTTHUMT00000388923.1" ; hgnc_id "HGNC:30069" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr16,18401584,18401940,-" ; tag basic ; transcript_id "AC136431.1--PKD1P5^ENST00000532415.5" ; transcript_name "PKD1P5-201" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
AC136431.1--PKD1P5 HAVANA gene 1001 6014 . + . FI_gene_label "AC136431.1^ENSG00000260126.2" ; ID "AC136431.1--PKD1P5^AC136431.1^ENSG00000260126.2" ; exon_id "ENSE00003856180.1" ; exon_number 1 ; gene_id "AC136431.1--PKD1P5^AC136431.1^ENSG00000260126.2" ; gene_name "AC136431.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000177276.2" ; havana_transcript "OTTHUMT00000436080.2" ; level 2 ; orig_coord_info "chr16,16499533,16499619,+" ; tag basic TAGENE ; transcript_id "AC136431.1--PKD1P5^ENST00000567465.2" ; transcript_name "AC136431.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
AC136431.1--PKD1P5 HAVANA RNA 1001 6014 . + . FI_gene_label "AC136431.1^ENSG00000260126.2" ; ID "AC136431.1--PKD1P5^ENST00000567465.2" ; Parent "AC136431.1--PKD1P5^AC136431.1^ENSG00000260126.2" ; exon_id "ENSE00003856180.1" ; exon_number 1 ; gene_id "AC136431.1--PKD1P5^AC136431.1^ENSG00000260126.2" ; gene_name "AC136431.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000177276.2" ; havana_transcript "OTTHUMT00000436080.2" ; level 2 ; orig_coord_info "chr16,16499533,16499619,+" ; tag basic TAGENE ; transcript_id "AC136431.1--PKD1P5^ENST00000567465.2" ; transcript_name "AC136431.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
ACTBP6--ACTB HAVANA gene 1001 2090 . + . FI_gene_label "ACTBP6^ENSG00000203413.3" ; ID "ACTBP6--ACTB^ACTBP6^ENSG00000203413.3" ; exon_id "ENSE00002116857.1" ; exon_number 1 ; gene_id "ACTBP6--ACTB^ACTBP6^ENSG00000203413.3" ; gene_name ACTBP6 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000164632.2" ; havana_transcript "OTTHUMT00000379462.2" ; hgnc_id "HGNC:139" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr8,84948585,84949674,+" ; tag pseudo_consens basic ; transcript_id "ACTBP6--ACTB^ENST00000520036.1" ; transcript_name "ACTBP6-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
ACTBP6--ACTB HAVANA RNA 1001 2090 . + . FI_gene_label "ACTBP6^ENSG00000203413.3" ; ID "ACTBP6--ACTB^ENST00000520036.1" ; Parent "ACTBP6--ACTB^ACTBP6^ENSG00000203413.3" ; exon_id "ENSE00002116857.1" ; exon_number 1 ; gene_id "ACTBP6--ACTB^ACTBP6^ENSG00000203413.3" ; gene_name ACTBP6 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000164632.2" ; havana_transcript "OTTHUMT00000379462.2" ; hgnc_id "HGNC:139" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr8,84948585,84949674,+" ; tag pseudo_consens basic ; transcript_id "ACTBP6--ACTB^ENST00000520036.1" ; transcript_name "ACTBP6-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
ADAMTS7P4--SNUPN HAVANA gene 5329 6178 . + . FI_gene_label "ADAMTS7P4^ENSG00000218052.5" ; ID "ADAMTS7P4--SNUPN^ADAMTS7P4^ENSG00000218052.5" ; exon_id "ENSE00002561679.1" ; exon_number 1 ; gene_id "ADAMTS7P4--SNUPN^ADAMTS7P4^ENSG00000218052.5" ; gene_name ADAMTS7P4 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000172143.2" ; havana_transcript "OTTHUMT00000417314.1" ; hgnc_id "HGNC:49410" ; level 1 ; orig_coord_info "chr15,85315365,85315516,-" ; tag exp_conf ; transcript_id "ADAMTS7P4--SNUPN^ENST00000558015.1" ; transcript_name "ADAMTS7P4-201" ; transcript_support_level 3 ; transcript_type processed_transcript
ADAMTS7P4--SNUPN HAVANA RNA 5329 6178 . + . FI_gene_label "ADAMTS7P4^ENSG00000218052.5" ; ID "ADAMTS7P4--SNUPN^ENST00000558015.1" ; Parent "ADAMTS7P4--SNUPN^ADAMTS7P4^ENSG00000218052.5" ; exon_id "ENSE00002561679.1" ; exon_number 1 ; gene_id "ADAMTS7P4--SNUPN^ADAMTS7P4^ENSG00000218052.5" ; gene_name ADAMTS7P4 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000172143.2" ; havana_transcript "OTTHUMT00000417314.1" ; hgnc_id "HGNC:49410" ; level 1 ; orig_coord_info "chr15,85315365,85315516,-" ; tag exp_conf ; transcript_id "ADAMTS7P4--SNUPN^ENST00000558015.1" ; transcript_name "ADAMTS7P4-201" ; transcript_support_level 3 ; transcript_type processed_transcript
L1 and L2 created:
AKAP13--ADAMTS7P4 HAVANA gene 69226 70075 . + . FI_gene_label "ADAMTS7P4^ENSG00000218052.5" ; ID "AKAP13--ADAMTS7P4^ADAMTS7P4^ENSG00000218052.5" ; exon_id "ENSE00002561679.1" ; exon_number 1 ; gene_id "AKAP13--ADAMTS7P4^ADAMTS7P4^ENSG00000218052.5" ; gene_name ADAMTS7P4 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000172143.2" ; havana_transcript "OTTHUMT00000417314.1" ; hgnc_id "HGNC:49410" ; level 1 ; orig_coord_info "chr15,85315365,85315516,-" ; tag exp_conf ; transcript_id "AKAP13--ADAMTS7P4^ENST00000558015.1" ; transcript_name "ADAMTS7P4-201" ; transcript_support_level 3 ; transcript_type processed_transcript
AKAP13--ADAMTS7P4 HAVANA RNA 69226 70075 . + . FI_gene_label "ADAMTS7P4^ENSG00000218052.5" ; ID "AKAP13--ADAMTS7P4^ENST00000558015.1" ; Parent "AKAP13--ADAMTS7P4^ADAMTS7P4^ENSG00000218052.5" ; exon_id "ENSE00002561679.1" ; exon_number 1 ; gene_id "AKAP13--ADAMTS7P4^ADAMTS7P4^ENSG00000218052.5" ; gene_name ADAMTS7P4 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000172143.2" ; havana_transcript "OTTHUMT00000417314.1" ; hgnc_id "HGNC:49410" ; level 1 ; orig_coord_info "chr15,85315365,85315516,-" ; tag exp_conf ; transcript_id "AKAP13--ADAMTS7P4^ENST00000558015.1" ; transcript_name "ADAMTS7P4-201" ; transcript_support_level 3 ; transcript_type processed_transcript
L1 and L2 created:
AL139042.1--CNR1 HAVANA gene 3186 9092 . + . FI_gene_label "AL139042.1^ENSG00000234426.3" ; ID "AL139042.1--CNR1^AL139042.1^ENSG00000234426.3" ; exon_id "ENSE00001607401.1" ; exon_number 1 ; gene_id "AL139042.1--CNR1^AL139042.1^ENSG00000234426.3" ; gene_name "AL139042.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000015187.4" ; havana_transcript "OTTHUMT00000041466.1" ; level 2 ; orig_coord_info "chr6,88420944,88421033,-" ; tag non_canonical_conserved ; transcript_id "AL139042.1--CNR1^ENST00000429137.1" ; transcript_name "AL139042.1-202" ; transcript_support_level 3 ; transcript_type lncRNA
AL139042.1--CNR1 HAVANA RNA 3186 9092 . + . FI_gene_label "AL139042.1^ENSG00000234426.3" ; ID "AL139042.1--CNR1^ENST00000429137.1" ; Parent "AL139042.1--CNR1^AL139042.1^ENSG00000234426.3" ; exon_id "ENSE00001607401.1" ; exon_number 1 ; gene_id "AL139042.1--CNR1^AL139042.1^ENSG00000234426.3" ; gene_name "AL139042.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000015187.4" ; havana_transcript "OTTHUMT00000041466.1" ; level 2 ; orig_coord_info "chr6,88420944,88421033,-" ; tag non_canonical_conserved ; transcript_id "AL139042.1--CNR1^ENST00000429137.1" ; transcript_name "AL139042.1-202" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
AL390334.1--NFIB HAVANA gene 3289 8836 . + . FI_gene_label "AL390334.1^ENSG00000258932.5" ; ID "AL390334.1--NFIB^AL390334.1^ENSG00000258932.5" ; exon_id "ENSE00002451730.1" ; exon_number 1 ; gene_id "AL390334.1--NFIB^AL390334.1^ENSG00000258932.5" ; gene_name "AL390334.1" ; gene_type transcribed_processed_pseudogene ; havana_gene "OTTHUMG00000170579.1" ; havana_transcript "OTTHUMT00000409668.1" ; level 2 ; orig_coord_info "chr14,27673029,27673230,-" ; transcript_id "AL390334.1--NFIB^ENST00000553392.5" ; transcript_name "AL390334.1-202" ; transcript_support_level 3 ; transcript_type processed_transcript
AL390334.1--NFIB HAVANA RNA 3289 8836 . + . FI_gene_label "AL390334.1^ENSG00000258932.5" ; ID "AL390334.1--NFIB^ENST00000553392.5" ; Parent "AL390334.1--NFIB^AL390334.1^ENSG00000258932.5" ; exon_id "ENSE00002451730.1" ; exon_number 1 ; gene_id "AL390334.1--NFIB^AL390334.1^ENSG00000258932.5" ; gene_name "AL390334.1" ; gene_type transcribed_processed_pseudogene ; havana_gene "OTTHUMG00000170579.1" ; havana_transcript "OTTHUMT00000409668.1" ; level 2 ; orig_coord_info "chr14,27673029,27673230,-" ; transcript_id "AL390334.1--NFIB^ENST00000553392.5" ; transcript_name "AL390334.1-202" ; transcript_support_level 3 ; transcript_type processed_transcript
L1 and L2 created:
ARID3B--AC012378.1 HAVANA gene 16382 17460 . + . FI_gene_label "AC012378.1^ENSG00000259180.1" ; ID "ARID3B--AC012378.1^AC012378.1^ENSG00000259180.1" ; exon_id "ENSE00002561732.1" ; exon_number 1 ; gene_id "ARID3B--AC012378.1^AC012378.1^ENSG00000259180.1" ; gene_name "AC012378.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000172615.1" ; havana_transcript "OTTHUMT00000419475.1" ; level 2 ; orig_coord_info "chr15,55680385,55680601,+" ; tag basic ; transcript_id "ARID3B--AC012378.1^ENST00000561155.1" ; transcript_name "AC012378.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
ARID3B--AC012378.1 HAVANA RNA 16382 17460 . + . FI_gene_label "AC012378.1^ENSG00000259180.1" ; ID "ARID3B--AC012378.1^ENST00000561155.1" ; Parent "ARID3B--AC012378.1^AC012378.1^ENSG00000259180.1" ; exon_id "ENSE00002561732.1" ; exon_number 1 ; gene_id "ARID3B--AC012378.1^AC012378.1^ENSG00000259180.1" ; gene_name "AC012378.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000172615.1" ; havana_transcript "OTTHUMT00000419475.1" ; level 2 ; orig_coord_info "chr15,55680385,55680601,+" ; tag basic ; transcript_id "ARID3B--AC012378.1^ENST00000561155.1" ; transcript_name "AC012378.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
ARPP19--AC009432.1 HAVANA gene 14461 15268 . + . FI_gene_label "AC009432.1^ENSG00000259331.1" ; ID "ARPP19--AC009432.1^AC009432.1^ENSG00000259331.1" ; exon_id "ENSE00002562562.1" ; exon_number 1 ; gene_id "ARPP19--AC009432.1^AC009432.1^ENSG00000259331.1" ; gene_name "AC009432.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000172481.1" ; havana_transcript "OTTHUMT00000418734.1" ; level 2 ; orig_coord_info "chr15,94600014,94600601,+" ; tag basic ; transcript_id "ARPP19--AC009432.1^ENST00000560391.1" ; transcript_name "AC009432.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
ARPP19--AC009432.1 HAVANA RNA 14461 15268 . + . FI_gene_label "AC009432.1^ENSG00000259331.1" ; ID "ARPP19--AC009432.1^ENST00000560391.1" ; Parent "ARPP19--AC009432.1^AC009432.1^ENSG00000259331.1" ; exon_id "ENSE00002562562.1" ; exon_number 1 ; gene_id "ARPP19--AC009432.1^AC009432.1^ENSG00000259331.1" ; gene_name "AC009432.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000172481.1" ; havana_transcript "OTTHUMT00000418734.1" ; level 2 ; orig_coord_info "chr15,94600014,94600601,+" ; tag basic ; transcript_id "ARPP19--AC009432.1^ENST00000560391.1" ; transcript_name "AC009432.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
ARPP19--AC022308.1 HAVANA gene 14461 15896 . + . FI_gene_label "AC022308.1^ENSG00000286917.1" ; ID "ARPP19--AC022308.1^AC022308.1^ENSG00000286917.1" ; exon_id "ENSE00003853368.1" ; exon_number 1 ; gene_id "ARPP19--AC022308.1^AC022308.1^ENSG00000286917.1" ; gene_name "AC022308.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000194625.1" ; havana_transcript "OTTHUMT00000520027.1" ; level 2 ; orig_coord_info "chr15,94726460,94726519,-" ; tag basic TAGENE ; transcript_id "ARPP19--AC022308.1^ENST00000661370.1" ; transcript_name "AC022308.1-201" ; transcript_type lncRNA
ARPP19--AC022308.1 HAVANA RNA 14461 15896 . + . FI_gene_label "AC022308.1^ENSG00000286917.1" ; ID "ARPP19--AC022308.1^ENST00000661370.1" ; Parent "ARPP19--AC022308.1^AC022308.1^ENSG00000286917.1" ; exon_id "ENSE00003853368.1" ; exon_number 1 ; gene_id "ARPP19--AC022308.1^AC022308.1^ENSG00000286917.1" ; gene_name "AC022308.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000194625.1" ; havana_transcript "OTTHUMT00000520027.1" ; level 2 ; orig_coord_info "chr15,94726460,94726519,-" ; tag basic TAGENE ; transcript_id "ARPP19--AC022308.1^ENST00000661370.1" ; transcript_name "AC022308.1-201" ; transcript_type lncRNA
L1 and L2 created:
ATF6--AL583804.1 HAVANA gene 38823 40785 . + . FI_gene_label "AL583804.1^ENSG00000225325.1" ; ID "ATF6--AL583804.1^AL583804.1^ENSG00000225325.1" ; exon_id "ENSE00001671787.1" ; exon_number 1 ; gene_id "ATF6--AL583804.1^AL583804.1^ENSG00000225325.1" ; gene_name "AL583804.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000033265.1" ; havana_transcript "OTTHUMT00000081455.1" ; level 2 ; orig_coord_info "chr1,166452562,166452632,-" ; tag basic ; transcript_id "ATF6--AL583804.1^ENST00000448643.1" ; transcript_name "AL583804.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
ATF6--AL583804.1 HAVANA RNA 38823 40785 . + . FI_gene_label "AL583804.1^ENSG00000225325.1" ; ID "ATF6--AL583804.1^ENST00000448643.1" ; Parent "ATF6--AL583804.1^AL583804.1^ENSG00000225325.1" ; exon_id "ENSE00001671787.1" ; exon_number 1 ; gene_id "ATF6--AL583804.1^AL583804.1^ENSG00000225325.1" ; gene_name "AL583804.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000033265.1" ; havana_transcript "OTTHUMT00000081455.1" ; level 2 ; orig_coord_info "chr1,166452562,166452632,-" ; tag basic ; transcript_id "ATF6--AL583804.1^ENST00000448643.1" ; transcript_name "AL583804.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
ATF6--FMO7P HAVANA gene 38823 42590 . + . FI_gene_label "FMO7P^ENSG00000230231.1" ; ID "ATF6--FMO7P^FMO7P^ENSG00000230231.1" ; exon_id "ENSE00001637035.1" ; exon_number 1 ; gene_id "ATF6--FMO7P^FMO7P^ENSG00000230231.1" ; gene_name FMO7P ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000033266.1" ; havana_transcript "OTTHUMT00000081456.1" ; hgnc_id "HGNC:32208" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr1,166474745,166474882,+" ; tag basic ; transcript_id "ATF6--FMO7P^ENST00000436045.1" ; transcript_name "FMO7P-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
ATF6--FMO7P HAVANA RNA 38823 42590 . + . FI_gene_label "FMO7P^ENSG00000230231.1" ; ID "ATF6--FMO7P^ENST00000436045.1" ; Parent "ATF6--FMO7P^FMO7P^ENSG00000230231.1" ; exon_id "ENSE00001637035.1" ; exon_number 1 ; gene_id "ATF6--FMO7P^FMO7P^ENSG00000230231.1" ; gene_name FMO7P ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000033266.1" ; havana_transcript "OTTHUMT00000081456.1" ; hgnc_id "HGNC:32208" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr1,166474745,166474882,+" ; tag basic ; transcript_id "ATF6--FMO7P^ENST00000436045.1" ; transcript_name "FMO7P-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
ATF6--UQCRBP2 HAVANA gene 38823 39119 . + . FI_gene_label "UQCRBP2^ENSG00000227941.1" ; ID "ATF6--UQCRBP2^UQCRBP2^ENSG00000227941.1" ; exon_id "ENSE00001683139.1" ; exon_number 1 ; gene_id "ATF6--UQCRBP2^UQCRBP2^ENSG00000227941.1" ; gene_name UQCRBP2 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000034418.1" ; havana_transcript "OTTHUMT00000083201.1" ; hgnc_id "HGNC:12584" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr1,162541332,162541628,-" ; tag pseudo_consens basic ; transcript_id "ATF6--UQCRBP2^ENST00000447827.1" ; transcript_name "UQCRBP2-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
ATF6--UQCRBP2 HAVANA RNA 38823 39119 . + . FI_gene_label "UQCRBP2^ENSG00000227941.1" ; ID "ATF6--UQCRBP2^ENST00000447827.1" ; Parent "ATF6--UQCRBP2^UQCRBP2^ENSG00000227941.1" ; exon_id "ENSE00001683139.1" ; exon_number 1 ; gene_id "ATF6--UQCRBP2^UQCRBP2^ENSG00000227941.1" ; gene_name UQCRBP2 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000034418.1" ; havana_transcript "OTTHUMT00000083201.1" ; hgnc_id "HGNC:12584" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr1,162541332,162541628,-" ; tag pseudo_consens basic ; transcript_id "ATF6--UQCRBP2^ENST00000447827.1" ; transcript_name "UQCRBP2-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
CA8--LINC01301 HAVANA gene 21013 28143 . + . FI_gene_label "LINC01301^ENSG00000251396.7" ; ID "CA8--LINC01301^LINC01301^ENSG00000251396.7" ; exon_id "ENSE00002168955.1" ; exon_number 1 ; gene_id "CA8--LINC01301^LINC01301^ENSG00000251396.7" ; gene_name LINC01301 ; gene_type lncRNA ; havana_gene "OTTHUMG00000165326.2" ; havana_transcript "OTTHUMT00000383452.1" ; hgnc_id "HGNC:50464" ; level 2 ; orig_coord_info "chr8,60508647,60508759,-" ; transcript_id "CA8--LINC01301^ENST00000476425.2" ; transcript_name "LINC01301-201" ; transcript_support_level 3 ; transcript_type lncRNA
CA8--LINC01301 HAVANA RNA 21013 28143 . + . FI_gene_label "LINC01301^ENSG00000251396.7" ; ID "CA8--LINC01301^ENST00000476425.2" ; Parent "CA8--LINC01301^LINC01301^ENSG00000251396.7" ; exon_id "ENSE00002168955.1" ; exon_number 1 ; gene_id "CA8--LINC01301^LINC01301^ENSG00000251396.7" ; gene_name LINC01301 ; gene_type lncRNA ; havana_gene "OTTHUMG00000165326.2" ; havana_transcript "OTTHUMT00000383452.1" ; hgnc_id "HGNC:50464" ; level 2 ; orig_coord_info "chr8,60508647,60508759,-" ; transcript_id "CA8--LINC01301^ENST00000476425.2" ; transcript_name "LINC01301-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
CCDC33--AC018943.1 HAVANA gene 34592 35649 . + . FI_gene_label "AC018943.1^ENSG00000260624.2" ; ID "CCDC33--AC018943.1^AC018943.1^ENSG00000260624.2" ; exon_id "ENSE00002624451.1" ; exon_number 1 ; gene_id "CCDC33--AC018943.1^AC018943.1^ENSG00000260624.2" ; gene_name "AC018943.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000172726.2" ; havana_transcript "OTTHUMT00000420269.1" ; level 2 ; orig_coord_info "chr15,73871943,73872007,-" ; transcript_id "CCDC33--AC018943.1^ENST00000562667.1" ; transcript_name "AC018943.1-202" ; transcript_support_level 3 ; transcript_type lncRNA
CCDC33--AC018943.1 HAVANA RNA 34592 35649 . + . FI_gene_label "AC018943.1^ENSG00000260624.2" ; ID "CCDC33--AC018943.1^ENST00000562667.1" ; Parent "CCDC33--AC018943.1^AC018943.1^ENSG00000260624.2" ; exon_id "ENSE00002624451.1" ; exon_number 1 ; gene_id "CCDC33--AC018943.1^AC018943.1^ENSG00000260624.2" ; gene_name "AC018943.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000172726.2" ; havana_transcript "OTTHUMT00000420269.1" ; level 2 ; orig_coord_info "chr15,73871943,73872007,-" ; transcript_id "CCDC33--AC018943.1^ENST00000562667.1" ; transcript_name "AC018943.1-202" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
CCDC33--INSYN1-AS1 HAVANA gene 34422 36697 . + . FI_gene_label "INSYN1-AS1^ENSG00000260469.3" ; ID "CCDC33--INSYN1-AS1^INSYN1-AS1^ENSG00000260469.3" ; exon_id "ENSE00002598708.1" ; exon_number 1 ; gene_id "CCDC33--INSYN1-AS1^INSYN1-AS1^ENSG00000260469.3" ; gene_name "INSYN1-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000172684.4" ; havana_transcript "OTTHUMT00000419869.2" ; hgnc_id "HGNC:51422" ; level 2 ; orig_coord_info "chr15,73768214,73768456,+" ; tag basic TAGENE ; transcript_id "CCDC33--INSYN1-AS1^ENST00000562031.2" ; transcript_name "INSYN1-AS1-201" ; transcript_support_level 3 ; transcript_type lncRNA
CCDC33--INSYN1-AS1 HAVANA RNA 34422 36697 . + . FI_gene_label "INSYN1-AS1^ENSG00000260469.3" ; ID "CCDC33--INSYN1-AS1^ENST00000562031.2" ; Parent "CCDC33--INSYN1-AS1^INSYN1-AS1^ENSG00000260469.3" ; exon_id "ENSE00002598708.1" ; exon_number 1 ; gene_id "CCDC33--INSYN1-AS1^INSYN1-AS1^ENSG00000260469.3" ; gene_name "INSYN1-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000172684.4" ; havana_transcript "OTTHUMT00000419869.2" ; hgnc_id "HGNC:51422" ; level 2 ; orig_coord_info "chr15,73768214,73768456,+" ; tag basic TAGENE ; transcript_id "CCDC33--INSYN1-AS1^ENST00000562031.2" ; transcript_name "INSYN1-AS1-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
CLN6--AL135790.1 HAVANA gene 17345 17798 . + . FI_gene_label "AL135790.1^ENSG00000232035.1" ; ID "CLN6--AL135790.1^AL135790.1^ENSG00000232035.1" ; exon_id "ENSE00001694405.1" ; exon_number 1 ; gene_id "CLN6--AL135790.1^AL135790.1^ENSG00000232035.1" ; gene_name "AL135790.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000019550.1" ; havana_transcript "OTTHUMT00000051723.1" ; level 2 ; orig_coord_info "chr9,10632083,10632203,-" ; tag basic ; transcript_id "CLN6--AL135790.1^ENST00000427161.1" ; transcript_name "AL135790.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
CLN6--AL135790.1 HAVANA RNA 17345 17798 . + . FI_gene_label "AL135790.1^ENSG00000232035.1" ; ID "CLN6--AL135790.1^ENST00000427161.1" ; Parent "CLN6--AL135790.1^AL135790.1^ENSG00000232035.1" ; exon_id "ENSE00001694405.1" ; exon_number 1 ; gene_id "CLN6--AL135790.1^AL135790.1^ENSG00000232035.1" ; gene_name "AL135790.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000019550.1" ; havana_transcript "OTTHUMT00000051723.1" ; level 2 ; orig_coord_info "chr9,10632083,10632203,-" ; tag basic ; transcript_id "CLN6--AL135790.1^ENST00000427161.1" ; transcript_name "AL135790.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
CLN6--AL161788.1 HAVANA gene 17345 17513 . + . FI_gene_label "AL161788.1^ENSG00000227138.1" ; ID "CLN6--AL161788.1^AL161788.1^ENSG00000227138.1" ; exon_id "ENSE00001797959.1" ; exon_number 1 ; gene_id "CLN6--AL161788.1^AL161788.1^ENSG00000227138.1" ; gene_name "AL161788.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000019552.1" ; havana_transcript "OTTHUMT00000051725.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr9,10777357,10777525,+" ; tag pseudo_consens basic ; transcript_id "CLN6--AL161788.1^ENST00000441805.1" ; transcript_name "AL161788.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
CLN6--AL161788.1 HAVANA RNA 17345 17513 . + . FI_gene_label "AL161788.1^ENSG00000227138.1" ; ID "CLN6--AL161788.1^ENST00000441805.1" ; Parent "CLN6--AL161788.1^AL161788.1^ENSG00000227138.1" ; exon_id "ENSE00001797959.1" ; exon_number 1 ; gene_id "CLN6--AL161788.1^AL161788.1^ENSG00000227138.1" ; gene_name "AL161788.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000019552.1" ; havana_transcript "OTTHUMT00000051725.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr9,10777357,10777525,+" ; tag pseudo_consens basic ; transcript_id "CLN6--AL161788.1^ENST00000441805.1" ; transcript_name "AL161788.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
CLN6--CLCN3P1 HAVANA gene 20951 24967 . + . FI_gene_label "CLCN3P1^ENSG00000232000.3" ; ID "CLN6--CLCN3P1^CLCN3P1^ENSG00000232000.3" ; exon_id "ENSE00001665822.2" ; exon_number 1 ; gene_id "CLN6--CLCN3P1^CLCN3P1^ENSG00000232000.3" ; gene_name CLCN3P1 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000193463.3" ; havana_transcript "OTTHUMT00000504104.1" ; hgnc_id "HGNC:49775" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr9,15047899,15048061,-" ; tag basic ; transcript_id "CLN6--CLCN3P1^ENST00000423965.2" ; transcript_name "CLCN3P1-201" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
CLN6--CLCN3P1 HAVANA RNA 20951 24967 . + . FI_gene_label "CLCN3P1^ENSG00000232000.3" ; ID "CLN6--CLCN3P1^ENST00000423965.2" ; Parent "CLN6--CLCN3P1^CLCN3P1^ENSG00000232000.3" ; exon_id "ENSE00001665822.2" ; exon_number 1 ; gene_id "CLN6--CLCN3P1^CLCN3P1^ENSG00000232000.3" ; gene_name CLCN3P1 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000193463.3" ; havana_transcript "OTTHUMT00000504104.1" ; hgnc_id "HGNC:49775" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr9,15047899,15048061,-" ; tag basic ; transcript_id "CLN6--CLCN3P1^ENST00000423965.2" ; transcript_name "CLCN3P1-201" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
CRYZL2P--SEC16B HAVANA gene 1005 12289 . + . FI_gene_label "CRYZL2P^ENSG00000242193.11" ; ID "CRYZL2P--SEC16B^CRYZL2P^ENSG00000242193.11" ; exon_id "ENSE00001918901.2" ; exon_number 1 ; gene_id "CRYZL2P--SEC16B^CRYZL2P^ENSG00000242193.11" ; gene_name CRYZL2P ; gene_type transcribed_unitary_pseudogene ; havana_gene "OTTHUMG00000154878.4" ; havana_transcript "OTTHUMT00000337460.2" ; hgnc_id "HGNC:52164" ; level 2 ; orig_coord_info "chr1,178037897,178037946,-" ; tag basic ; transcript_id "CRYZL2P--SEC16B^ENST00000462729.2" ; transcript_name "CRYZL2P-201" ; transcript_support_level NA ; transcript_type transcribed_unitary_pseudogene
CRYZL2P--SEC16B HAVANA RNA 1005 12289 . + . FI_gene_label "CRYZL2P^ENSG00000242193.11" ; ID "CRYZL2P--SEC16B^ENST00000462729.2" ; Parent "CRYZL2P--SEC16B^CRYZL2P^ENSG00000242193.11" ; exon_id "ENSE00001918901.2" ; exon_number 1 ; gene_id "CRYZL2P--SEC16B^CRYZL2P^ENSG00000242193.11" ; gene_name CRYZL2P ; gene_type transcribed_unitary_pseudogene ; havana_gene "OTTHUMG00000154878.4" ; havana_transcript "OTTHUMT00000337460.2" ; hgnc_id "HGNC:52164" ; level 2 ; orig_coord_info "chr1,178037897,178037946,-" ; tag basic ; transcript_id "CRYZL2P--SEC16B^ENST00000462729.2" ; transcript_name "CRYZL2P-201" ; transcript_support_level NA ; transcript_type transcribed_unitary_pseudogene
L1 and L2 created:
FGFR1--AC007991.3 HAVANA gene 37259 39760 . + . FI_gene_label "AC007991.3^ENSG00000253939.1" ; ID "FGFR1--AC007991.3^AC007991.3^ENSG00000253939.1" ; exon_id "ENSE00002093325.1" ; exon_number 1 ; gene_id "FGFR1--AC007991.3^AC007991.3^ENSG00000253939.1" ; gene_name "AC007991.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000164192.2" ; havana_transcript "OTTHUMT00000377737.1" ; level 2 ; orig_coord_info "chr8,39995115,39995248,-" ; tag basic ; transcript_id "FGFR1--AC007991.3^ENST00000517623.1" ; transcript_name "AC007991.3-201" ; transcript_support_level 4 ; transcript_type lncRNA
FGFR1--AC007991.3 HAVANA RNA 37259 39760 . + . FI_gene_label "AC007991.3^ENSG00000253939.1" ; ID "FGFR1--AC007991.3^ENST00000517623.1" ; Parent "FGFR1--AC007991.3^AC007991.3^ENSG00000253939.1" ; exon_id "ENSE00002093325.1" ; exon_number 1 ; gene_id "FGFR1--AC007991.3^AC007991.3^ENSG00000253939.1" ; gene_name "AC007991.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000164192.2" ; havana_transcript "OTTHUMT00000377737.1" ; level 2 ; orig_coord_info "chr8,39995115,39995248,-" ; tag basic ; transcript_id "FGFR1--AC007991.3^ENST00000517623.1" ; transcript_name "AC007991.3-201" ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created:
GTF2IP23--FBN1 HAVANA gene 1001 3037 . + . FI_gene_label "GTF2IP23^ENSG00000230295.1" ; ID "GTF2IP23--FBN1^GTF2IP23^ENSG00000230295.1" ; exon_id "ENSE00001777014.1" ; exon_number 1 ; gene_id "GTF2IP23--FBN1^GTF2IP23^ENSG00000230295.1" ; gene_name GTF2IP23 ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000156905.1" ; havana_transcript "OTTHUMT00000346559.1" ; hgnc_id "HGNC:51735" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr7,66880708,66880893,+" ; tag basic ; transcript_id "GTF2IP23--FBN1^ENST00000423746.1" ; transcript_name "GTF2IP23-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
GTF2IP23--FBN1 HAVANA RNA 1001 3037 . + . FI_gene_label "GTF2IP23^ENSG00000230295.1" ; ID "GTF2IP23--FBN1^ENST00000423746.1" ; Parent "GTF2IP23--FBN1^GTF2IP23^ENSG00000230295.1" ; exon_id "ENSE00001777014.1" ; exon_number 1 ; gene_id "GTF2IP23--FBN1^GTF2IP23^ENSG00000230295.1" ; gene_name GTF2IP23 ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000156905.1" ; havana_transcript "OTTHUMT00000346559.1" ; hgnc_id "HGNC:51735" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr7,66880708,66880893,+" ; tag basic ; transcript_id "GTF2IP23--FBN1^ENST00000423746.1" ; transcript_name "GTF2IP23-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
IQCH-AS1--ADAM10 HAVANA gene 14435 15869 . + . FI_gene_label "IQCH-AS1^ENSG00000259673.6" ; ID "IQCH-AS1--ADAM10^IQCH-AS1^ENSG00000259673.6" ; exon_id "ENSE00002548323.1" ; exon_number 1 ; gene_id "IQCH-AS1--ADAM10^IQCH-AS1^ENSG00000259673.6" ; gene_name "IQCH-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000172247.3" ; havana_transcript "OTTHUMT00000417489.1" ; hgnc_id "HGNC:44104" ; level 2 ; orig_coord_info "chr15,67413503,67413538,-" ; transcript_id "IQCH-AS1--ADAM10^ENST00000558025.1" ; transcript_name "IQCH-AS1-201" ; transcript_support_level 2 ; transcript_type lncRNA
IQCH-AS1--ADAM10 HAVANA RNA 14435 15869 . + . FI_gene_label "IQCH-AS1^ENSG00000259673.6" ; ID "IQCH-AS1--ADAM10^ENST00000558025.1" ; Parent "IQCH-AS1--ADAM10^IQCH-AS1^ENSG00000259673.6" ; exon_id "ENSE00002548323.1" ; exon_number 1 ; gene_id "IQCH-AS1--ADAM10^IQCH-AS1^ENSG00000259673.6" ; gene_name "IQCH-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000172247.3" ; havana_transcript "OTTHUMT00000417489.1" ; hgnc_id "HGNC:44104" ; level 2 ; orig_coord_info "chr15,67413503,67413538,-" ; transcript_id "IQCH-AS1--ADAM10^ENST00000558025.1" ; transcript_name "IQCH-AS1-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
JARID2--HULC HAVANA gene 56430 61217 . + . FI_gene_label "HULC^ENSG00000285219.2" ; ID "JARID2--HULC^HULC^ENSG00000285219.2" ; exon_id "ENSE00003818520.1" ; exon_number 1 ; gene_id "JARID2--HULC^HULC^ENSG00000285219.2" ; gene_name HULC ; gene_type lncRNA ; havana_gene "OTTHUMG00000160417.16" ; havana_transcript "OTTHUMT00000495699.1" ; hgnc_id "HGNC:34232" ; level 2 ; orig_coord_info "chr6,8776036,8776173,+" ; tag RNA_Seq_supported_only ; transcript_id "JARID2--HULC^ENST00000429060.2" ; transcript_name "HULC-201" ; transcript_support_level 2 ; transcript_type lncRNA
JARID2--HULC HAVANA RNA 56430 61217 . + . FI_gene_label "HULC^ENSG00000285219.2" ; ID "JARID2--HULC^ENST00000429060.2" ; Parent "JARID2--HULC^HULC^ENSG00000285219.2" ; exon_id "ENSE00003818520.1" ; exon_number 1 ; gene_id "JARID2--HULC^HULC^ENSG00000285219.2" ; gene_name HULC ; gene_type lncRNA ; havana_gene "OTTHUMG00000160417.16" ; havana_transcript "OTTHUMT00000495699.1" ; hgnc_id "HGNC:34232" ; level 2 ; orig_coord_info "chr6,8776036,8776173,+" ; tag RNA_Seq_supported_only ; transcript_id "JARID2--HULC^ENST00000429060.2" ; transcript_name "HULC-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
LCLAT1--HMGB1P25 HAVANA gene 21518 22124 . + . FI_gene_label "HMGB1P25^ENSG00000230886.3" ; ID "LCLAT1--HMGB1P25^HMGB1P25^ENSG00000230886.3" ; exon_id "ENSE00001839437.1" ; exon_number 1 ; gene_id "LCLAT1--HMGB1P25^HMGB1P25^ENSG00000230886.3" ; gene_name HMGB1P25 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000159110.1" ; havana_transcript "OTTHUMT00000353373.1" ; hgnc_id "HGNC:39116" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr2,9018293,9018899,-" ; tag pseudo_consens basic ; transcript_id "LCLAT1--HMGB1P25^ENST00000468402.1" ; transcript_name "HMGB1P25-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
LCLAT1--HMGB1P25 HAVANA RNA 21518 22124 . + . FI_gene_label "HMGB1P25^ENSG00000230886.3" ; ID "LCLAT1--HMGB1P25^ENST00000468402.1" ; Parent "LCLAT1--HMGB1P25^HMGB1P25^ENSG00000230886.3" ; exon_id "ENSE00001839437.1" ; exon_number 1 ; gene_id "LCLAT1--HMGB1P25^HMGB1P25^ENSG00000230886.3" ; gene_name HMGB1P25 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000159110.1" ; havana_transcript "OTTHUMT00000353373.1" ; hgnc_id "HGNC:39116" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr2,9018293,9018899,-" ; tag pseudo_consens basic ; transcript_id "LCLAT1--HMGB1P25^ENST00000468402.1" ; transcript_name "HMGB1P25-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
LCLAT1--RPL30P3 HAVANA gene 21518 21850 . + . FI_gene_label "RPL30P3^ENSG00000223640.1" ; ID "LCLAT1--RPL30P3^RPL30P3^ENSG00000223640.1" ; exon_id "ENSE00001799109.1" ; exon_number 1 ; gene_id "LCLAT1--RPL30P3^RPL30P3^ENSG00000223640.1" ; gene_name RPL30P3 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000157021.3" ; havana_transcript "OTTHUMT00000347130.2" ; hgnc_id "HGNC:36380" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr2,9081395,9081727,-" ; tag pseudo_consens basic ; transcript_id "LCLAT1--RPL30P3^ENST00000424262.1" ; transcript_name "RPL30P3-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
LCLAT1--RPL30P3 HAVANA RNA 21518 21850 . + . FI_gene_label "RPL30P3^ENSG00000223640.1" ; ID "LCLAT1--RPL30P3^ENST00000424262.1" ; Parent "LCLAT1--RPL30P3^RPL30P3^ENSG00000223640.1" ; exon_id "ENSE00001799109.1" ; exon_number 1 ; gene_id "LCLAT1--RPL30P3^RPL30P3^ENSG00000223640.1" ; gene_name RPL30P3 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000157021.3" ; havana_transcript "OTTHUMT00000347130.2" ; hgnc_id "HGNC:36380" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr2,9081395,9081727,-" ; tag pseudo_consens basic ; transcript_id "LCLAT1--RPL30P3^ENST00000424262.1" ; transcript_name "RPL30P3-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
LINC02852--IQCH HAVANA gene 1001 3483 . + . FI_gene_label "LINC02852^ENSG00000285866.1" ; ID "LINC02852--IQCH^LINC02852^ENSG00000285866.1" ; exon_id "ENSE00003831614.1" ; exon_number 1 ; gene_id "LINC02852--IQCH^LINC02852^ENSG00000285866.1" ; gene_name LINC02852 ; gene_type lncRNA ; havana_gene "OTTHUMG00000193145.1" ; havana_transcript "OTTHUMT00000500290.1" ; hgnc_id "HGNC:54388" ; level 2 ; orig_coord_info "chr15,94589097,94589259,-" ; tag basic ; transcript_id "LINC02852--IQCH^ENST00000647740.1" ; transcript_name "LINC02852-201" ; transcript_type lncRNA
LINC02852--IQCH HAVANA RNA 1001 3483 . + . FI_gene_label "LINC02852^ENSG00000285866.1" ; ID "LINC02852--IQCH^ENST00000647740.1" ; Parent "LINC02852--IQCH^LINC02852^ENSG00000285866.1" ; exon_id "ENSE00003831614.1" ; exon_number 1 ; gene_id "LINC02852--IQCH^LINC02852^ENSG00000285866.1" ; gene_name LINC02852 ; gene_type lncRNA ; havana_gene "OTTHUMG00000193145.1" ; havana_transcript "OTTHUMT00000500290.1" ; hgnc_id "HGNC:54388" ; level 2 ; orig_coord_info "chr15,94589097,94589259,-" ; tag basic ; transcript_id "LINC02852--IQCH^ENST00000647740.1" ; transcript_name "LINC02852-201" ; transcript_type lncRNA
L1 and L2 created:
MPDZ--AL353595.1 HAVANA gene 56636 62512 . + . FI_gene_label "AL353595.1^ENSG00000285784.1" ; ID "MPDZ--AL353595.1^AL353595.1^ENSG00000285784.1" ; exon_id "ENSE00003840568.1" ; exon_number 1 ; gene_id "MPDZ--AL353595.1^AL353595.1^ENSG00000285784.1" ; gene_name "AL353595.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000193132.1" ; havana_transcript "OTTHUMT00000500254.1" ; level 2 ; orig_coord_info "chr9,11618530,11618631,+" ; tag basic ; transcript_id "MPDZ--AL353595.1^ENST00000649122.1" ; transcript_name "AL353595.1-201" ; transcript_type lncRNA
MPDZ--AL353595.1 HAVANA RNA 56636 62512 . + . FI_gene_label "AL353595.1^ENSG00000285784.1" ; ID "MPDZ--AL353595.1^ENST00000649122.1" ; Parent "MPDZ--AL353595.1^AL353595.1^ENSG00000285784.1" ; exon_id "ENSE00003840568.1" ; exon_number 1 ; gene_id "MPDZ--AL353595.1^AL353595.1^ENSG00000285784.1" ; gene_name "AL353595.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000193132.1" ; havana_transcript "OTTHUMT00000500254.1" ; level 2 ; orig_coord_info "chr9,11618530,11618631,+" ; tag basic ; transcript_id "MPDZ--AL353595.1^ENST00000649122.1" ; transcript_name "AL353595.1-201" ; transcript_type lncRNA
L1 and L2 created:
NR2C2--AC097374.1 HAVANA gene 40549 42033 . + . FI_gene_label "AC097374.1^ENSG00000259848.9" ; ID "NR2C2--AC097374.1^AC097374.1^ENSG00000259848.9" ; exon_id "ENSE00001749846.2" ; exon_number 1 ; gene_id "NR2C2--AC097374.1^AC097374.1^ENSG00000259848.9" ; gene_name "AC097374.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000155135.4" ; havana_transcript "OTTHUMT00000338507.2" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr2,94892508,94892756,-" ; tag basic ; transcript_id "NR2C2--AC097374.1^ENST00000400783.4" ; transcript_name "AC097374.1-203" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
NR2C2--AC097374.1 HAVANA RNA 40549 42033 . + . FI_gene_label "AC097374.1^ENSG00000259848.9" ; ID "NR2C2--AC097374.1^ENST00000400783.4" ; Parent "NR2C2--AC097374.1^AC097374.1^ENSG00000259848.9" ; exon_id "ENSE00001749846.2" ; exon_number 1 ; gene_id "NR2C2--AC097374.1^AC097374.1^ENSG00000259848.9" ; gene_name "AC097374.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000155135.4" ; havana_transcript "OTTHUMT00000338507.2" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr2,94892508,94892756,-" ; tag basic ; transcript_id "NR2C2--AC097374.1^ENST00000400783.4" ; transcript_name "AC097374.1-203" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
NR2C2--AC114947.1 HAVANA gene 33223 35791 . + . FI_gene_label "AC114947.1^ENSG00000188850.9" ; ID "NR2C2--AC114947.1^AC114947.1^ENSG00000188850.9" ; exon_id "ENSE00002070992.1" ; exon_number 1 ; gene_id "NR2C2--AC114947.1^AC114947.1^ENSG00000188850.9" ; gene_name "AC114947.1" ; gene_type transcribed_processed_pseudogene ; havana_gene "OTTHUMG00000162222.1" ; havana_transcript "OTTHUMT00000367972.1" ; level 2 ; orig_coord_info "chr5,43336164,43336245,+" ; tag basic ; transcript_id "NR2C2--AC114947.1^ENST00000511991.1" ; transcript_name "AC114947.1-201" ; transcript_support_level 2 ; transcript_type processed_transcript
NR2C2--AC114947.1 HAVANA RNA 33223 35791 . + . FI_gene_label "AC114947.1^ENSG00000188850.9" ; ID "NR2C2--AC114947.1^ENST00000511991.1" ; Parent "NR2C2--AC114947.1^AC114947.1^ENSG00000188850.9" ; exon_id "ENSE00002070992.1" ; exon_number 1 ; gene_id "NR2C2--AC114947.1^AC114947.1^ENSG00000188850.9" ; gene_name "AC114947.1" ; gene_type transcribed_processed_pseudogene ; havana_gene "OTTHUMG00000162222.1" ; havana_transcript "OTTHUMT00000367972.1" ; level 2 ; orig_coord_info "chr5,43336164,43336245,+" ; tag basic ; transcript_id "NR2C2--AC114947.1^ENST00000511991.1" ; transcript_name "AC114947.1-201" ; transcript_support_level 2 ; transcript_type processed_transcript
L1 and L2 created:
NR2C2--AC134878.1 HAVANA gene 33223 33465 . + . FI_gene_label "AC134878.1^ENSG00000274231.1" ; ID "NR2C2--AC134878.1^AC134878.1^ENSG00000274231.1" ; exon_id "ENSE00003744576.1" ; exon_number 1 ; gene_id "NR2C2--AC134878.1^AC134878.1^ENSG00000274231.1" ; gene_name "AC134878.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000188062.1" ; havana_transcript "OTTHUMT00000475845.1" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chrY,11144250,11144492,+" ; tag basic ; transcript_id "NR2C2--AC134878.1^ENST00000619901.1" ; transcript_name "AC134878.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
NR2C2--AC134878.1 HAVANA RNA 33223 33465 . + . FI_gene_label "AC134878.1^ENSG00000274231.1" ; ID "NR2C2--AC134878.1^ENST00000619901.1" ; Parent "NR2C2--AC134878.1^AC134878.1^ENSG00000274231.1" ; exon_id "ENSE00003744576.1" ; exon_number 1 ; gene_id "NR2C2--AC134878.1^AC134878.1^ENSG00000274231.1" ; gene_name "AC134878.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000188062.1" ; havana_transcript "OTTHUMT00000475845.1" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chrY,11144250,11144492,+" ; tag basic ; transcript_id "NR2C2--AC134878.1^ENST00000619901.1" ; transcript_name "AC134878.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
NR2C2--AC138776.1 HAVANA gene 33223 53167 . + . FI_gene_label "AC138776.1^ENSG00000286406.1" ; ID "NR2C2--AC138776.1^AC138776.1^ENSG00000286406.1" ; exon_id "ENSE00003855687.1" ; exon_number 1 ; gene_id "NR2C2--AC138776.1^AC138776.1^ENSG00000286406.1" ; gene_name "AC138776.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000193804.1" ; havana_transcript "OTTHUMT00000504859.1" ; level 2 ; orig_coord_info "chr22,11827523,11827658,+" ; tag RNA_Seq_supported_only basic ; transcript_id "NR2C2--AC138776.1^ENST00000657566.1" ; transcript_name "AC138776.1-201" ; transcript_type processed_transcript
NR2C2--AC138776.1 HAVANA RNA 33223 53167 . + . FI_gene_label "AC138776.1^ENSG00000286406.1" ; ID "NR2C2--AC138776.1^ENST00000657566.1" ; Parent "NR2C2--AC138776.1^AC138776.1^ENSG00000286406.1" ; exon_id "ENSE00003855687.1" ; exon_number 1 ; gene_id "NR2C2--AC138776.1^AC138776.1^ENSG00000286406.1" ; gene_name "AC138776.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000193804.1" ; havana_transcript "OTTHUMT00000504859.1" ; level 2 ; orig_coord_info "chr22,11827523,11827658,+" ; tag RNA_Seq_supported_only basic ; transcript_id "NR2C2--AC138776.1^ENST00000657566.1" ; transcript_name "AC138776.1-201" ; transcript_type processed_transcript
L1 and L2 created:
NR2C2--AC140113.1 HAVANA gene 33223 33391 . + . FI_gene_label "AC140113.1^ENSG00000270570.1" ; ID "NR2C2--AC140113.1^AC140113.1^ENSG00000270570.1" ; exon_id "ENSE00003691087.1" ; exon_number 1 ; gene_id "NR2C2--AC140113.1^AC140113.1^ENSG00000270570.1" ; gene_name "AC140113.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000185059.1" ; havana_transcript "OTTHUMT00000469512.1" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chrY,11107719,11107887,-" ; tag basic ; transcript_id "NR2C2--AC140113.1^ENST00000603467.1" ; transcript_name "AC140113.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
NR2C2--AC140113.1 HAVANA RNA 33223 33391 . + . FI_gene_label "AC140113.1^ENSG00000270570.1" ; ID "NR2C2--AC140113.1^ENST00000603467.1" ; Parent "NR2C2--AC140113.1^AC140113.1^ENSG00000270570.1" ; exon_id "ENSE00003691087.1" ; exon_number 1 ; gene_id "NR2C2--AC140113.1^AC140113.1^ENSG00000270570.1" ; gene_name "AC140113.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000185059.1" ; havana_transcript "OTTHUMT00000469512.1" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chrY,11107719,11107887,-" ; tag basic ; transcript_id "NR2C2--AC140113.1^ENST00000603467.1" ; transcript_name "AC140113.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
PCLAF--AC100830.1 HAVANA gene 12826 15434 . + . FI_gene_label "AC100830.1^ENSG00000259635.1" ; ID "PCLAF--AC100830.1^AC100830.1^ENSG00000259635.1" ; exon_id "ENSE00002548963.1" ; exon_number 1 ; gene_id "PCLAF--AC100830.1^AC100830.1^ENSG00000259635.1" ; gene_name "AC100830.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000172475.1" ; havana_transcript "OTTHUMT00000418714.1" ; level 2 ; orig_coord_info "chr15,64701248,64701319,+" ; tag basic ; transcript_id "PCLAF--AC100830.1^ENST00000560387.1" ; transcript_name "AC100830.1-201" ; transcript_support_level 2 ; transcript_type lncRNA
PCLAF--AC100830.1 HAVANA RNA 12826 15434 . + . FI_gene_label "AC100830.1^ENSG00000259635.1" ; ID "PCLAF--AC100830.1^ENST00000560387.1" ; Parent "PCLAF--AC100830.1^AC100830.1^ENSG00000259635.1" ; exon_id "ENSE00002548963.1" ; exon_number 1 ; gene_id "PCLAF--AC100830.1^AC100830.1^ENSG00000259635.1" ; gene_name "AC100830.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000172475.1" ; havana_transcript "OTTHUMT00000418714.1" ; level 2 ; orig_coord_info "chr15,64701248,64701319,+" ; tag basic ; transcript_id "PCLAF--AC100830.1^ENST00000560387.1" ; transcript_name "AC100830.1-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
PLEKHO2--AL589923.1 HAVANA gene 12722 14037 . + . FI_gene_label "AL589923.1^ENSG00000232413.1" ; ID "PLEKHO2--AL589923.1^AL589923.1^ENSG00000232413.1" ; exon_id "ENSE00001594935.1" ; exon_number 1 ; gene_id "PLEKHO2--AL589923.1^AL589923.1^ENSG00000232413.1" ; gene_name "AL589923.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000020685.1" ; havana_transcript "OTTHUMT00000054108.1" ; level 2 ; orig_coord_info "chr9,126057580,126057814,+" ; tag not_organism_supported basic ; transcript_id "PLEKHO2--AL589923.1^ENST00000441473.1" ; transcript_name "AL589923.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
PLEKHO2--AL589923.1 HAVANA RNA 12722 14037 . + . FI_gene_label "AL589923.1^ENSG00000232413.1" ; ID "PLEKHO2--AL589923.1^ENST00000441473.1" ; Parent "PLEKHO2--AL589923.1^AL589923.1^ENSG00000232413.1" ; exon_id "ENSE00001594935.1" ; exon_number 1 ; gene_id "PLEKHO2--AL589923.1^AL589923.1^ENSG00000232413.1" ; gene_name "AL589923.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000020685.1" ; havana_transcript "OTTHUMT00000054108.1" ; level 2 ; orig_coord_info "chr9,126057580,126057814,+" ; tag not_organism_supported basic ; transcript_id "PLEKHO2--AL589923.1^ENST00000441473.1" ; transcript_name "AL589923.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
RAB11FIP1--FP236383.3 HAVANA gene 17633 24228 . + . FI_gene_label "FP236383.3^ENSG00000280441.3" ; ID "RAB11FIP1--FP236383.3^FP236383.3^ENSG00000280441.3" ; exon_id "ENSE00003845623.1" ; exon_number 1 ; gene_id "RAB11FIP1--FP236383.3^FP236383.3^ENSG00000280441.3" ; gene_name "FP236383.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189419.3" ; havana_transcript "OTTHUMT00000479653.3" ; level 2 ; orig_coord_info "chr21,8380643,8380972,+" ; tag basic ; transcript_id "RAB11FIP1--FP236383.3^ENST00000623860.3" ; transcript_name "FP236383.3-201" ; transcript_support_level 2 ; transcript_type lncRNA
RAB11FIP1--FP236383.3 HAVANA RNA 17633 24228 . + . FI_gene_label "FP236383.3^ENSG00000280441.3" ; ID "RAB11FIP1--FP236383.3^ENST00000623860.3" ; Parent "RAB11FIP1--FP236383.3^FP236383.3^ENSG00000280441.3" ; exon_id "ENSE00003845623.1" ; exon_number 1 ; gene_id "RAB11FIP1--FP236383.3^FP236383.3^ENSG00000280441.3" ; gene_name "FP236383.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189419.3" ; havana_transcript "OTTHUMT00000479653.3" ; level 2 ; orig_coord_info "chr21,8380643,8380972,+" ; tag basic ; transcript_id "RAB11FIP1--FP236383.3^ENST00000623860.3" ; transcript_name "FP236383.3-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
RARS1--AC117834.1 HAVANA gene 20150 26760 . + . FI_gene_label "AC117834.1^ENSG00000253197.5" ; ID "RARS1--AC117834.1^AC117834.1^ENSG00000253197.5" ; exon_id "ENSE00002125400.1" ; exon_number 1 ; gene_id "RARS1--AC117834.1^AC117834.1^ENSG00000253197.5" ; gene_name "AC117834.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000164195.1" ; havana_transcript "OTTHUMT00000377761.1" ; level 2 ; orig_coord_info "chr8,92882985,92883057,+" ; tag basic ; transcript_id "RARS1--AC117834.1^ENST00000521203.1" ; transcript_name "AC117834.1-202" ; transcript_support_level 4 ; transcript_type lncRNA
RARS1--AC117834.1 HAVANA RNA 20150 26760 . + . FI_gene_label "AC117834.1^ENSG00000253197.5" ; ID "RARS1--AC117834.1^ENST00000521203.1" ; Parent "RARS1--AC117834.1^AC117834.1^ENSG00000253197.5" ; exon_id "ENSE00002125400.1" ; exon_number 1 ; gene_id "RARS1--AC117834.1^AC117834.1^ENSG00000253197.5" ; gene_name "AC117834.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000164195.1" ; havana_transcript "OTTHUMT00000377761.1" ; level 2 ; orig_coord_info "chr8,92882985,92883057,+" ; tag basic ; transcript_id "RARS1--AC117834.1^ENST00000521203.1" ; transcript_name "AC117834.1-202" ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created:
RBL1--AC061997.1 ENSEMBL gene 29167 29262 . + . FI_gene_label "AC061997.1^ENSG00000251838.1" ; ID "RBL1--AC061997.1^AC061997.1^ENSG00000251838.1" ; exon_id "ENSE00002088306.1" ; exon_number 1 ; gene_id "RBL1--AC061997.1^AC061997.1^ENSG00000251838.1" ; gene_name "AC061997.1" ; gene_type snoRNA ; level 3 ; orig_coord_info "chr11,37702125,37702220,-" ; tag basic ; transcript_id "RBL1--AC061997.1^ENST00000516029.1" ; transcript_name "AC061997.1-201" ; transcript_support_level NA ; transcript_type snoRNA
RBL1--AC061997.1 ENSEMBL RNA 29167 29262 . + . FI_gene_label "AC061997.1^ENSG00000251838.1" ; ID "RBL1--AC061997.1^ENST00000516029.1" ; Parent "RBL1--AC061997.1^AC061997.1^ENSG00000251838.1" ; exon_id "ENSE00002088306.1" ; exon_number 1 ; gene_id "RBL1--AC061997.1^AC061997.1^ENSG00000251838.1" ; gene_name "AC061997.1" ; gene_type snoRNA ; level 3 ; orig_coord_info "chr11,37702125,37702220,-" ; tag basic ; transcript_id "RBL1--AC061997.1^ENST00000516029.1" ; transcript_name "AC061997.1-201" ; transcript_support_level NA ; transcript_type snoRNA
L1 and L2 created:
RBL1--AC104042.1 HAVANA gene 29167 30717 . + . FI_gene_label "AC104042.1^ENSG00000254498.1" ; ID "RBL1--AC104042.1^AC104042.1^ENSG00000254498.1" ; exon_id "ENSE00002168998.1" ; exon_number 1 ; gene_id "RBL1--AC104042.1^AC104042.1^ENSG00000254498.1" ; gene_name "AC104042.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166332.1" ; havana_transcript "OTTHUMT00000389187.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr11,36696317,36697090,+" ; tag pseudo_consens basic ; transcript_id "RBL1--AC104042.1^ENST00000524806.1" ; transcript_name "AC104042.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
RBL1--AC104042.1 HAVANA RNA 29167 30717 . + . FI_gene_label "AC104042.1^ENSG00000254498.1" ; ID "RBL1--AC104042.1^ENST00000524806.1" ; Parent "RBL1--AC104042.1^AC104042.1^ENSG00000254498.1" ; exon_id "ENSE00002168998.1" ; exon_number 1 ; gene_id "RBL1--AC104042.1^AC104042.1^ENSG00000254498.1" ; gene_name "AC104042.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166332.1" ; havana_transcript "OTTHUMT00000389187.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr11,36696317,36697090,+" ; tag pseudo_consens basic ; transcript_id "RBL1--AC104042.1^ENST00000524806.1" ; transcript_name "AC104042.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
RELA--RELA-DT HAVANA gene 12224 17736 . + . FI_gene_label "RELA-DT^ENSG00000285533.2" ; ID "RELA--RELA-DT^RELA-DT^ENSG00000285533.2" ; exon_id "ENSE00003838591.1" ; exon_number 1 ; gene_id "RELA--RELA-DT^RELA-DT^ENSG00000285533.2" ; gene_name "RELA-DT" ; gene_type lncRNA ; havana_gene "OTTHUMG00000193144.2" ; havana_transcript "OTTHUMT00000500289.1" ; hgnc_id "HGNC:54185" ; level 2 ; orig_coord_info "chr11,65663086,65663148,+" ; tag basic ; transcript_id "RELA--RELA-DT^ENST00000648185.1" ; transcript_name "RELA-DT-201" ; transcript_type lncRNA
RELA--RELA-DT HAVANA RNA 12224 17736 . + . FI_gene_label "RELA-DT^ENSG00000285533.2" ; ID "RELA--RELA-DT^ENST00000648185.1" ; Parent "RELA--RELA-DT^RELA-DT^ENSG00000285533.2" ; exon_id "ENSE00003838591.1" ; exon_number 1 ; gene_id "RELA--RELA-DT^RELA-DT^ENSG00000285533.2" ; gene_name "RELA-DT" ; gene_type lncRNA ; havana_gene "OTTHUMG00000193144.2" ; havana_transcript "OTTHUMT00000500289.1" ; hgnc_id "HGNC:54185" ; level 2 ; orig_coord_info "chr11,65663086,65663148,+" ; tag basic ; transcript_id "RELA--RELA-DT^ENST00000648185.1" ; transcript_name "RELA-DT-201" ; transcript_type lncRNA
L1 and L2 created:
RNU6-1254P--FBN1 ENSEMBL gene 1001 1104 . + . FI_gene_label "RNU6-1254P^ENSG00000212568.1" ; ID "RNU6-1254P--FBN1^RNU6-1254P^ENSG00000212568.1" ; exon_id "ENSE00001806964.1" ; exon_number 1 ; gene_id "RNU6-1254P--FBN1^RNU6-1254P^ENSG00000212568.1" ; gene_name "RNU6-1254P" ; gene_type snRNA ; hgnc_id "HGNC:48217" ; level 3 ; orig_coord_info "chr7,66891188,66891291,+" ; tag basic ; transcript_id "RNU6-1254P--FBN1^ENST00000391266.1" ; transcript_name "RNU6-1254P-201" ; transcript_support_level NA ; transcript_type snRNA
RNU6-1254P--FBN1 ENSEMBL RNA 1001 1104 . + . FI_gene_label "RNU6-1254P^ENSG00000212568.1" ; ID "RNU6-1254P--FBN1^ENST00000391266.1" ; Parent "RNU6-1254P--FBN1^RNU6-1254P^ENSG00000212568.1" ; exon_id "ENSE00001806964.1" ; exon_number 1 ; gene_id "RNU6-1254P--FBN1^RNU6-1254P^ENSG00000212568.1" ; gene_name "RNU6-1254P" ; gene_type snRNA ; hgnc_id "HGNC:48217" ; level 3 ; orig_coord_info "chr7,66891188,66891291,+" ; tag basic ; transcript_id "RNU6-1254P--FBN1^ENST00000391266.1" ; transcript_name "RNU6-1254P-201" ; transcript_support_level NA ; transcript_type snRNA
L1 and L2 created:
RNU6-745P--CTDSPL2 ENSEMBL gene 1001 1106 . + . FI_gene_label "RNU6-745P^ENSG00000200216.2" ; ID "RNU6-745P--CTDSPL2^RNU6-745P^ENSG00000200216.2" ; exon_id "ENSE00001438109.2" ; exon_number 1 ; gene_id "RNU6-745P--CTDSPL2^RNU6-745P^ENSG00000200216.2" ; gene_name "RNU6-745P" ; gene_type snRNA ; hgnc_id "HGNC:47708" ; level 3 ; orig_coord_info "chr15,70193236,70193341,+" ; tag basic ; transcript_id "RNU6-745P--CTDSPL2^ENST00000363346.2" ; transcript_name "RNU6-745P-201" ; transcript_support_level NA ; transcript_type snRNA
RNU6-745P--CTDSPL2 ENSEMBL RNA 1001 1106 . + . FI_gene_label "RNU6-745P^ENSG00000200216.2" ; ID "RNU6-745P--CTDSPL2^ENST00000363346.2" ; Parent "RNU6-745P--CTDSPL2^RNU6-745P^ENSG00000200216.2" ; exon_id "ENSE00001438109.2" ; exon_number 1 ; gene_id "RNU6-745P--CTDSPL2^RNU6-745P^ENSG00000200216.2" ; gene_name "RNU6-745P" ; gene_type snRNA ; hgnc_id "HGNC:47708" ; level 3 ; orig_coord_info "chr15,70193236,70193341,+" ; tag basic ; transcript_id "RNU6-745P--CTDSPL2^ENST00000363346.2" ; transcript_name "RNU6-745P-201" ; transcript_support_level NA ; transcript_type snRNA
L1 and L2 created:
SKAP1--EPHA1-AS1 HAVANA gene 21044 22864 . + . FI_gene_label "EPHA1-AS1^ENSG00000229153.5" ; ID "SKAP1--EPHA1-AS1^EPHA1-AS1^ENSG00000229153.5" ; exon_id "ENSE00001801203.1" ; exon_number 1 ; gene_id "SKAP1--EPHA1-AS1^EPHA1-AS1^ENSG00000229153.5" ; gene_name "EPHA1-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000155893.1" ; havana_transcript "OTTHUMT00000342150.1" ; hgnc_id "HGNC:27799" ; level 2 ; orig_coord_info "chr7,143407833,143407890,+" ; transcript_id "SKAP1--EPHA1-AS1^ENST00000421648.1" ; transcript_name "EPHA1-AS1-201" ; transcript_support_level 2 ; transcript_type lncRNA
SKAP1--EPHA1-AS1 HAVANA RNA 21044 22864 . + . FI_gene_label "EPHA1-AS1^ENSG00000229153.5" ; ID "SKAP1--EPHA1-AS1^ENST00000421648.1" ; Parent "SKAP1--EPHA1-AS1^EPHA1-AS1^ENSG00000229153.5" ; exon_id "ENSE00001801203.1" ; exon_number 1 ; gene_id "SKAP1--EPHA1-AS1^EPHA1-AS1^ENSG00000229153.5" ; gene_name "EPHA1-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000155893.1" ; havana_transcript "OTTHUMT00000342150.1" ; hgnc_id "HGNC:27799" ; level 2 ; orig_coord_info "chr7,143407833,143407890,+" ; transcript_id "SKAP1--EPHA1-AS1^ENST00000421648.1" ; transcript_name "EPHA1-AS1-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
SORD--AC009558.1 HAVANA gene 22201 23781 . + . FI_gene_label "AC009558.1^ENSG00000259360.1" ; ID "SORD--AC009558.1^AC009558.1^ENSG00000259360.1" ; exon_id "ENSE00002571756.1" ; exon_number 1 ; gene_id "SORD--AC009558.1^AC009558.1^ENSG00000259360.1" ; gene_name "AC009558.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000172056.1" ; havana_transcript "OTTHUMT00000416650.1" ; level 2 ; orig_coord_info "chr15,47399369,47399554,-" ; tag basic ; transcript_id "SORD--AC009558.1^ENST00000561174.1" ; transcript_name "AC009558.1-201" ; transcript_support_level 4 ; transcript_type lncRNA
SORD--AC009558.1 HAVANA RNA 22201 23781 . + . FI_gene_label "AC009558.1^ENSG00000259360.1" ; ID "SORD--AC009558.1^ENST00000561174.1" ; Parent "SORD--AC009558.1^AC009558.1^ENSG00000259360.1" ; exon_id "ENSE00002571756.1" ; exon_number 1 ; gene_id "SORD--AC009558.1^AC009558.1^ENSG00000259360.1" ; gene_name "AC009558.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000172056.1" ; havana_transcript "OTTHUMT00000416650.1" ; level 2 ; orig_coord_info "chr15,47399369,47399554,-" ; tag basic ; transcript_id "SORD--AC009558.1^ENST00000561174.1" ; transcript_name "AC009558.1-201" ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created:
SQOR--LINC02055 HAVANA gene 24406 31351 . + . FI_gene_label "LINC02055^ENSG00000254101.7" ; ID "SQOR--LINC02055^LINC02055^ENSG00000254101.7" ; exon_id "ENSE00002131038.1" ; exon_number 1 ; gene_id "SQOR--LINC02055^LINC02055^ENSG00000254101.7" ; gene_name LINC02055 ; gene_type lncRNA ; havana_gene "OTTHUMG00000164139.20" ; havana_transcript "OTTHUMT00000377376.1" ; hgnc_id "HGNC:52895" ; level 2 ; orig_coord_info "chr8,136047021,136047205,+" ; transcript_id "SQOR--LINC02055^ENST00000502901.6" ; transcript_name "LINC02055-201" ; transcript_support_level 4 ; transcript_type lncRNA
SQOR--LINC02055 HAVANA RNA 24406 31351 . + . FI_gene_label "LINC02055^ENSG00000254101.7" ; ID "SQOR--LINC02055^ENST00000502901.6" ; Parent "SQOR--LINC02055^LINC02055^ENSG00000254101.7" ; exon_id "ENSE00002131038.1" ; exon_number 1 ; gene_id "SQOR--LINC02055^LINC02055^ENSG00000254101.7" ; gene_name LINC02055 ; gene_type lncRNA ; havana_gene "OTTHUMG00000164139.20" ; havana_transcript "OTTHUMT00000377376.1" ; hgnc_id "HGNC:52895" ; level 2 ; orig_coord_info "chr8,136047021,136047205,+" ; transcript_id "SQOR--LINC02055^ENST00000502901.6" ; transcript_name "LINC02055-201" ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
TLK2--AC240565.1 HAVANA RNA 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^ENST00000624936.2" ; Parent "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
TLK2P1--AC110079.1 HAVANA RNA 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^ENST00000530992.1" ; Parent "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
TLK2P1--AC110079.1 HAVANA RNA 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^ENST00000567913.2" ; Parent "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
L1 and L2 created:
UBE2Q2P1--GOLGA6L10 HAVANA gene 1422 13175 . + . FI_gene_label "UBE2Q2P1^ENSG00000189136.9" ; ID "UBE2Q2P1--GOLGA6L10^UBE2Q2P1^ENSG00000189136.9" ; exon_id "ENSE00002026145.1" ; exon_number 1 ; gene_id "UBE2Q2P1--GOLGA6L10^UBE2Q2P1^ENSG00000189136.9" ; gene_name UBE2Q2P1 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000148662.3" ; havana_transcript "OTTHUMT00000308970.2" ; hgnc_id "HGNC:37439" ; level 2 ; orig_coord_info "chr15,84569505,84570795,-" ; transcript_id "UBE2Q2P1--GOLGA6L10^ENST00000339094.5" ; transcript_name "UBE2Q2P1-201" ; transcript_support_level 2 ; transcript_type processed_transcript
UBE2Q2P1--GOLGA6L10 HAVANA RNA 1422 13175 . + . FI_gene_label "UBE2Q2P1^ENSG00000189136.9" ; ID "UBE2Q2P1--GOLGA6L10^ENST00000339094.5" ; Parent "UBE2Q2P1--GOLGA6L10^UBE2Q2P1^ENSG00000189136.9" ; exon_id "ENSE00002026145.1" ; exon_number 1 ; gene_id "UBE2Q2P1--GOLGA6L10^UBE2Q2P1^ENSG00000189136.9" ; gene_name UBE2Q2P1 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000148662.3" ; havana_transcript "OTTHUMT00000308970.2" ; hgnc_id "HGNC:37439" ; level 2 ; orig_coord_info "chr15,84569505,84570795,-" ; transcript_id "UBE2Q2P1--GOLGA6L10^ENST00000339094.5" ; transcript_name "UBE2Q2P1-201" ; transcript_support_level 2 ; transcript_type processed_transcript
L1 and L2 created:
USP3--AC019294.2 HAVANA gene 31032 36886 . + . FI_gene_label "AC019294.2^ENSG00000260288.4" ; ID "USP3--AC019294.2^AC019294.2^ENSG00000260288.4" ; exon_id "ENSE00002594273.1" ; exon_number 1 ; gene_id "USP3--AC019294.2^AC019294.2^ENSG00000260288.4" ; gene_name "AC019294.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000172793.14" ; havana_transcript "OTTHUMT00000420498.1" ; level 2 ; orig_coord_info "chr15,75737820,75737998,+" ; tag basic ; transcript_id "USP3--AC019294.2^ENST00000565686.1" ; transcript_name "AC019294.2-201" ; transcript_support_level 4 ; transcript_type lncRNA
USP3--AC019294.2 HAVANA RNA 31032 36886 . + . FI_gene_label "AC019294.2^ENSG00000260288.4" ; ID "USP3--AC019294.2^ENST00000565686.1" ; Parent "USP3--AC019294.2^AC019294.2^ENSG00000260288.4" ; exon_id "ENSE00002594273.1" ; exon_number 1 ; gene_id "USP3--AC019294.2^AC019294.2^ENSG00000260288.4" ; gene_name "AC019294.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000172793.14" ; havana_transcript "OTTHUMT00000420498.1" ; level 2 ; orig_coord_info "chr15,75737820,75737998,+" ; tag basic ; transcript_id "USP3--AC019294.2^ENST00000565686.1" ; transcript_name "AC019294.2-201" ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created:
VKORC1L1--AC090517.5 HAVANA gene 12944 21766 . + . FI_gene_label "AC090517.5^ENSG00000285331.2" ; ID "VKORC1L1--AC090517.5^AC090517.5^ENSG00000285331.2" ; exon_id "ENSE00002548736.1" ; exon_number 1 ; gene_id "VKORC1L1--AC090517.5^AC090517.5^ENSG00000285331.2" ; gene_name "AC090517.5" ; gene_type lncRNA ; havana_gene "OTTHUMG00000192444.2" ; havana_transcript "OTTHUMT00000494149.1" ; level 2 ; orig_coord_info "chr15,56917540,56917648,-" ; tag basic ; transcript_id "VKORC1L1--AC090517.5^ENST00000559920.5" ; transcript_name "AC090517.5-202" ; transcript_support_level 2 ; transcript_type lncRNA
VKORC1L1--AC090517.5 HAVANA RNA 12944 21766 . + . FI_gene_label "AC090517.5^ENSG00000285331.2" ; ID "VKORC1L1--AC090517.5^ENST00000559920.5" ; Parent "VKORC1L1--AC090517.5^AC090517.5^ENSG00000285331.2" ; exon_id "ENSE00002548736.1" ; exon_number 1 ; gene_id "VKORC1L1--AC090517.5^AC090517.5^ENSG00000285331.2" ; gene_name "AC090517.5" ; gene_type lncRNA ; havana_gene "OTTHUMG00000192444.2" ; havana_transcript "OTTHUMT00000494149.1" ; level 2 ; orig_coord_info "chr15,56917540,56917648,-" ; tag basic ; transcript_id "VKORC1L1--AC090517.5^ENST00000559920.5" ; transcript_name "AC090517.5-202" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
ZNF229--AL357052.1 HAVANA gene 14449 15829 . + . FI_gene_label "AL357052.1^ENSG00000231662.1" ; ID "ZNF229--AL357052.1^AL357052.1^ENSG00000231662.1" ; exon_id "ENSE00001645801.1" ; exon_number 1 ; gene_id "ZNF229--AL357052.1^AL357052.1^ENSG00000231662.1" ; gene_name "AL357052.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000014325.1" ; havana_transcript "OTTHUMT00000039969.1" ; level 2 ; orig_coord_info "chr6,19320918,19321021,-" ; tag basic ; transcript_id "ZNF229--AL357052.1^ENST00000443504.1" ; transcript_name "AL357052.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
ZNF229--AL357052.1 HAVANA RNA 14449 15829 . + . FI_gene_label "AL357052.1^ENSG00000231662.1" ; ID "ZNF229--AL357052.1^ENST00000443504.1" ; Parent "ZNF229--AL357052.1^AL357052.1^ENSG00000231662.1" ; exon_id "ENSE00001645801.1" ; exon_number 1 ; gene_id "ZNF229--AL357052.1^AL357052.1^ENSG00000231662.1" ; gene_name "AL357052.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000014325.1" ; havana_transcript "OTTHUMT00000039969.1" ; level 2 ; orig_coord_info "chr6,19320918,19321021,-" ; tag basic ; transcript_id "ZNF229--AL357052.1^ENST00000443504.1" ; transcript_name "AL357052.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
ZNF566--FP671120.8 HAVANA gene 14520 14831 . + . FI_gene_label "FP671120.8^ENSG00000286012.1" ; ID "ZNF566--FP671120.8^FP671120.8^ENSG00000286012.1" ; exon_id "ENSE00003850779.1" ; exon_number 1 ; gene_id "ZNF566--FP671120.8^FP671120.8^ENSG00000286012.1" ; gene_name "FP671120.8" ; gene_type TEC ; havana_gene "OTTHUMG00000193756.1" ; havana_transcript "OTTHUMT00000504490.1" ; level 2 ; orig_coord_info "chr21,8240736,8241047,+" ; tag basic ; transcript_id "ZNF566--FP671120.8^ENST00000651349.1" ; transcript_name "FP671120.8-201" ; transcript_type TEC
ZNF566--FP671120.8 HAVANA RNA 14520 14831 . + . FI_gene_label "FP671120.8^ENSG00000286012.1" ; ID "ZNF566--FP671120.8^ENST00000651349.1" ; Parent "ZNF566--FP671120.8^FP671120.8^ENSG00000286012.1" ; exon_id "ENSE00003850779.1" ; exon_number 1 ; gene_id "ZNF566--FP671120.8^FP671120.8^ENSG00000286012.1" ; gene_name "FP671120.8" ; gene_type TEC ; havana_gene "OTTHUMG00000193756.1" ; havana_transcript "OTTHUMT00000504490.1" ; level 2 ; orig_coord_info "chr21,8240736,8241047,+" ; tag basic ; transcript_id "ZNF566--FP671120.8^ENST00000651349.1" ; transcript_name "FP671120.8-201" ; transcript_type TEC
L1 and L2 created:
ZNF566--MIR6724-2 ENSEMBL gene 14520 14611 . + . FI_gene_label "MIR6724-2^ENSG00000274060.1" ; ID "ZNF566--MIR6724-2^MIR6724-2^ENSG00000274060.1" ; exon_id "ENSE00003726608.1" ; exon_number 1 ; gene_id "ZNF566--MIR6724-2^MIR6724-2^ENSG00000274060.1" ; gene_name "MIR6724-2" ; gene_type miRNA ; hgnc_id "HGNC:50832" ; level 3 ; orig_coord_info "chr21,8249505,8249596,+" ; tag basic ; transcript_id "ZNF566--MIR6724-2^ENST00000616483.1" ; transcript_name "MIR6724-2-201" ; transcript_support_level NA ; transcript_type miRNA
ZNF566--MIR6724-2 ENSEMBL RNA 14520 14611 . + . FI_gene_label "MIR6724-2^ENSG00000274060.1" ; ID "ZNF566--MIR6724-2^ENST00000616483.1" ; Parent "ZNF566--MIR6724-2^MIR6724-2^ENSG00000274060.1" ; exon_id "ENSE00003726608.1" ; exon_number 1 ; gene_id "ZNF566--MIR6724-2^MIR6724-2^ENSG00000274060.1" ; gene_name "MIR6724-2" ; gene_type miRNA ; hgnc_id "HGNC:50832" ; level 3 ; orig_coord_info "chr21,8249505,8249596,+" ; tag basic ; transcript_id "ZNF566--MIR6724-2^ENST00000616483.1" ; transcript_name "MIR6724-2-201" ; transcript_support_level NA ; transcript_type miRNA
1994 cases fixed where L3 features have parent feature(s) missing
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check5: l1 linked to l2 ----------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check6: remove orphan l1 ---------------------------
We remove only those not supposed to be orphan
None found
------------------------------ done in 0 seconds -------------------------------
------------------------- Check7: all level3 locations -------------------------
------------------------------ done in 1 seconds -------------------------------
------------------------------ Check8: check cds -------------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check9: check exons ------------------------------
No exons created
No exons locations modified
No supernumerary exons removed
No level2 locations modified
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check10: check utrs ------------------------------
3878 UTRs created that were missing
No UTRs locations modified
No supernumerary UTRs removed
------------------------------ done in 0 seconds -------------------------------
------------------------ Check11: all level2 locations -------------------------
No problem found
------------------------------ done in 1 seconds -------------------------------
------------------------ Check12: all level1 locations -------------------------
We fixed 139 wrong level1 location cases
------------------------------ done in 0 seconds -------------------------------
---------------------- Check13: remove identical isoforms ----------------------
None found
------------------------------ done in 0 seconds -------------------------------
------ End checks (done in 2 second) ------
GFF3 file parsed