Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/411641ff1ab25b4288cc6bcf4bca67/aih-tih-sc-966ec5-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ba/5124acf8d1fb9da6b3f6fed34236fe/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ba/5124acf8d1fb9da6b3f6fed34236fe/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.csi: No such file or directory
ls: *.crai: No such file or directory