File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/41173a1f72d20f47d622ae116544dd/.command.log
Size
5.5 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-b567d0-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/41173a1f72d20f47d622ae116544dd/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/41173a1f72d20f47d622ae116544dd/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/b06e78a47422b10dddb37c853b4674/aih-tih-sc-b567d0-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/22/ccd828d72a378f704658796f9c6f44/aih-tih-sc-b567d0-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
AC244035.1--RHEX
starfusion
TLK2P1--AC110079.1
starfusion
TLK2--AC240565.1
starfusion
STX16--NPEPL1
starfusion
UBE2Q2P1--GOLGA6L10
starfusion
UPK3B--PMS2P3
starfusion
PMS2P12--AC004980.4
starfusion
PCSK6--GOLGA8F
starfusion
ANXA2--AC087385.3
starfusion
TVP23C--CDRT4
arriba
PCDHA4--PCDHA13
arriba
PCDHA4--PCDHAC1
arriba
PCDHA4--PCDHAC2
arriba
TMED7--TICAM2
arriba
NPHP3--ACAD11
arriba
EFL1--GOLGA6L11P
arriba
KLRC4--KLRK1
arriba
PCSK6--DNM1P47
arriba
TARS3--TM2D3
arriba
CRYZL2P--SEC16B
arriba
CCDC169--SOHLH2
arriba
UPK1B--IGSF11
arriba
B4GALT4--IGSF11
arriba

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Processing AC244035.1--RHEX:   0%|          | 0/23 [00:00<?, ?it/s]
Processing AC244035.1--RHEX:   4%|▍         | 1/23 [00:00<00:02,  9.16it/s]
Processing TLK2P1--AC110079.1:   4%|▍         | 1/23 [00:00<00:02,  9.16it/s]
Processing TLK2P1--AC110079.1:   9%|▊         | 2/23 [00:00<00:02,  9.38it/s]
Processing TLK2--AC240565.1:   9%|▊         | 2/23 [00:00<00:02,  9.38it/s]  
Processing TLK2--AC240565.1:  13%|█▎        | 3/23 [00:00<00:02,  9.45it/s]
Processing STX16--NPEPL1:  13%|█▎        | 3/23 [00:00<00:02,  9.45it/s]   
Processing STX16--NPEPL1:  17%|█▋        | 4/23 [00:00<00:02,  9.48it/s]
Processing UBE2Q2P1--GOLGA6L10:  17%|█▋        | 4/23 [00:00<00:02,  9.48it/s]
Processing UBE2Q2P1--GOLGA6L10:  22%|██▏       | 5/23 [00:00<00:01,  9.50it/s]
Processing UPK3B--PMS2P3:  22%|██▏       | 5/23 [00:00<00:01,  9.50it/s]      
Processing UPK3B--PMS2P3:  26%|██▌       | 6/23 [00:00<00:01,  9.51it/s]
Processing PMS2P12--AC004980.4:  26%|██▌       | 6/23 [00:00<00:01,  9.51it/s]
Processing PMS2P12--AC004980.4:  30%|███       | 7/23 [00:00<00:01,  9.53it/s]
Processing PCSK6--GOLGA8F:  30%|███       | 7/23 [00:00<00:01,  9.53it/s]     
Processing PCSK6--GOLGA8F:  35%|███▍      | 8/23 [00:00<00:01,  9.52it/s]
Processing ANXA2--AC087385.3:  35%|███▍      | 8/23 [00:00<00:01,  9.52it/s]
Processing ANXA2--AC087385.3:  39%|███▉      | 9/23 [00:00<00:01,  9.52it/s]
Processing TVP23C--CDRT4:  39%|███▉      | 9/23 [00:00<00:01,  9.52it/s]    
Processing TVP23C--CDRT4:  43%|████▎     | 10/23 [00:01<00:01,  9.52it/s]
Processing PCDHA4--PCDHA13:  43%|████▎     | 10/23 [00:01<00:01,  9.52it/s]
Processing PCDHA4--PCDHA13:  48%|████▊     | 11/23 [00:01<00:01,  9.54it/s]
Processing PCDHA4--PCDHAC1:  48%|████▊     | 11/23 [00:01<00:01,  9.54it/s]
Processing PCDHA4--PCDHAC1:  52%|█████▏    | 12/23 [00:01<00:01,  9.55it/s]
Processing PCDHA4--PCDHAC2:  52%|█████▏    | 12/23 [00:01<00:01,  9.55it/s]
Processing PCDHA4--PCDHAC2:  57%|█████▋    | 13/23 [00:01<00:01,  9.54it/s]
Processing TMED7--TICAM2:  57%|█████▋    | 13/23 [00:01<00:01,  9.54it/s]  
Processing TMED7--TICAM2:  61%|██████    | 14/23 [00:01<00:00,  9.55it/s]
Processing NPHP3--ACAD11:  61%|██████    | 14/23 [00:01<00:00,  9.55it/s]
Processing NPHP3--ACAD11:  65%|██████▌   | 15/23 [00:01<00:00,  9.55it/s]
Processing EFL1--GOLGA6L11P:  65%|██████▌   | 15/23 [00:01<00:00,  9.55it/s]
Processing EFL1--GOLGA6L11P:  70%|██████▉   | 16/23 [00:01<00:00,  9.55it/s]
Processing KLRC4--KLRK1:  70%|██████▉   | 16/23 [00:01<00:00,  9.55it/s]    
Processing KLRC4--KLRK1:  74%|███████▍  | 17/23 [00:01<00:00,  9.56it/s]
Processing PCSK6--DNM1P47:  74%|███████▍  | 17/23 [00:01<00:00,  9.56it/s]
Processing PCSK6--DNM1P47:  78%|███████▊  | 18/23 [00:01<00:00,  9.56it/s]
Processing TARS3--TM2D3:  78%|███████▊  | 18/23 [00:01<00:00,  9.56it/s]  
Processing TARS3--TM2D3:  83%|████████▎ | 19/23 [00:01<00:00,  9.55it/s]
Processing CRYZL2P--SEC16B:  83%|████████▎ | 19/23 [00:01<00:00,  9.55it/s]
Processing CRYZL2P--SEC16B:  87%|████████▋ | 20/23 [00:02<00:00,  9.55it/s]
Processing CCDC169--SOHLH2:  87%|████████▋ | 20/23 [00:02<00:00,  9.55it/s]
Processing CCDC169--SOHLH2:  91%|█████████▏| 21/23 [00:02<00:00,  9.55it/s]
Processing UPK1B--IGSF11:  91%|█████████▏| 21/23 [00:02<00:00,  9.55it/s]  
Processing UPK1B--IGSF11:  96%|█████████▌| 22/23 [00:02<00:00,  9.49it/s]
Processing B4GALT4--IGSF11:  96%|█████████▌| 22/23 [00:02<00:00,  9.49it/s]
Processing B4GALT4--IGSF11: 100%|██████████| 23/23 [00:02<00:00,  9.50it/s]
Processing B4GALT4--IGSF11: 100%|██████████| 23/23 [00:02<00:00,  9.52it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory