File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/ddab37cfd8abedab8c115459fdfdd9/.command.log
Size
5.8 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/dac37234ac113ac94eaf975f3aa043/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/ddab37cfd8abedab8c115459fdfdd9/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/ddab37cfd8abedab8c115459fdfdd9/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/7a546ecaafbec85b0ef70290a58c2a/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
ASAP1--CCDC26
starfusion
arriba
LINC00381--NKAIN2
starfusion
GUCY1B2--NKAIN2
starfusion
TLK2P1--AC110079.1
starfusion
arriba
PRSS27--TPSB2
starfusion
KCNMB2-AS1--ADGRL3
starfusion
BBOX1-AS1--ADGRL3
starfusion
TLK2--FAM157A
starfusion
PHLDB2--NECTIN3
starfusion
arriba
AMDHD1--PROCR
starfusion
UBE2Q2P1--GOLGA6L10
starfusion
NECTIN3--PHLDB2
starfusion
arriba
FBXO25--AC240565.1
starfusion
PMS2P6--CCDC146
starfusion
TVP23C--CDRT4
arriba
STX16--NPEPL1
arriba
LRCH1--GRID1
arriba
SELENOO--TUBGCP6
arriba
CYCTP--PDE11A
arriba
AC015911.9--SLFN12L
arriba
NECTIN3--PLCXD2
arriba
PLCXD2--NECTIN3
arriba
AC092807.3--DDAH1
arriba
SVEP1--MYLK
arriba

  0%|          | 0/24 [00:00<?, ?it/s]
Processing ASAP1--CCDC26:   0%|          | 0/24 [00:00<?, ?it/s]
Processing ASAP1--CCDC26:   4%|▍         | 1/24 [00:00<00:02,  9.24it/s]
Processing LINC00381--NKAIN2:   4%|▍         | 1/24 [00:00<00:02,  9.24it/s]
Processing LINC00381--NKAIN2:   8%|▊         | 2/24 [00:00<00:02,  9.48it/s]
Processing GUCY1B2--NKAIN2:   8%|▊         | 2/24 [00:00<00:02,  9.48it/s]  
Processing GUCY1B2--NKAIN2:  12%|█▎        | 3/24 [00:00<00:02,  9.56it/s]
Processing TLK2P1--AC110079.1:  12%|█▎        | 3/24 [00:00<00:02,  9.56it/s]
Processing TLK2P1--AC110079.1:  17%|█▋        | 4/24 [00:00<00:02,  9.60it/s]
Processing PRSS27--TPSB2:  17%|█▋        | 4/24 [00:00<00:02,  9.60it/s]     
Processing PRSS27--TPSB2:  21%|██        | 5/24 [00:00<00:01,  9.62it/s]
Processing KCNMB2-AS1--ADGRL3:  21%|██        | 5/24 [00:00<00:01,  9.62it/s]
Processing KCNMB2-AS1--ADGRL3:  25%|██▌       | 6/24 [00:00<00:01,  9.63it/s]
Processing BBOX1-AS1--ADGRL3:  25%|██▌       | 6/24 [00:00<00:01,  9.63it/s] 
Processing BBOX1-AS1--ADGRL3:  29%|██▉       | 7/24 [00:00<00:01,  9.64it/s]
Processing TLK2--FAM157A:  29%|██▉       | 7/24 [00:00<00:01,  9.64it/s]    
Processing TLK2--FAM157A:  33%|███▎      | 8/24 [00:00<00:01,  9.64it/s]
Processing PHLDB2--NECTIN3:  33%|███▎      | 8/24 [00:00<00:01,  9.64it/s]
Processing PHLDB2--NECTIN3:  38%|███▊      | 9/24 [00:00<00:01,  9.64it/s]
Processing AMDHD1--PROCR:  38%|███▊      | 9/24 [00:00<00:01,  9.64it/s]  
Processing AMDHD1--PROCR:  42%|████▏     | 10/24 [00:01<00:01,  9.65it/s]
Processing UBE2Q2P1--GOLGA6L10:  42%|████▏     | 10/24 [00:01<00:01,  9.65it/s]
Processing UBE2Q2P1--GOLGA6L10:  46%|████▌     | 11/24 [00:01<00:01,  9.65it/s]
Processing NECTIN3--PHLDB2:  46%|████▌     | 11/24 [00:01<00:01,  9.65it/s]    
Processing NECTIN3--PHLDB2:  50%|█████     | 12/24 [00:01<00:01,  9.65it/s]
Processing FBXO25--AC240565.1:  50%|█████     | 12/24 [00:01<00:01,  9.65it/s]
Processing FBXO25--AC240565.1:  54%|█████▍    | 13/24 [00:01<00:01,  9.65it/s]
Processing PMS2P6--CCDC146:  54%|█████▍    | 13/24 [00:01<00:01,  9.65it/s]   
Processing PMS2P6--CCDC146:  58%|█████▊    | 14/24 [00:01<00:01,  9.65it/s]
Processing TVP23C--CDRT4:  58%|█████▊    | 14/24 [00:01<00:01,  9.65it/s]  
Processing TVP23C--CDRT4:  62%|██████▎   | 15/24 [00:01<00:00,  9.65it/s]
Processing STX16--NPEPL1:  62%|██████▎   | 15/24 [00:01<00:00,  9.65it/s]
Processing STX16--NPEPL1:  67%|██████▋   | 16/24 [00:01<00:00,  9.65it/s]
Processing LRCH1--GRID1:  67%|██████▋   | 16/24 [00:01<00:00,  9.65it/s] 
Processing LRCH1--GRID1:  71%|███████   | 17/24 [00:01<00:00,  9.65it/s]
Processing SELENOO--TUBGCP6:  71%|███████   | 17/24 [00:01<00:00,  9.65it/s]
Processing SELENOO--TUBGCP6:  75%|███████▌  | 18/24 [00:01<00:00,  9.65it/s]
Processing CYCTP--PDE11A:  75%|███████▌  | 18/24 [00:01<00:00,  9.65it/s]   
Processing CYCTP--PDE11A:  79%|███████▉  | 19/24 [00:01<00:00,  9.65it/s]
Processing AC015911.9--SLFN12L:  79%|███████▉  | 19/24 [00:01<00:00,  9.65it/s]
Processing AC015911.9--SLFN12L:  83%|████████▎ | 20/24 [00:02<00:00,  9.65it/s]
Processing NECTIN3--PLCXD2:  83%|████████▎ | 20/24 [00:02<00:00,  9.65it/s]    
Processing NECTIN3--PLCXD2:  88%|████████▊ | 21/24 [00:02<00:00,  9.65it/s]
Processing PLCXD2--NECTIN3:  88%|████████▊ | 21/24 [00:02<00:00,  9.65it/s]
Processing PLCXD2--NECTIN3:  92%|█████████▏| 22/24 [00:02<00:00,  9.65it/s]
Processing AC092807.3--DDAH1:  92%|█████████▏| 22/24 [00:02<00:00,  9.65it/s]
Processing AC092807.3--DDAH1:  96%|█████████▌| 23/24 [00:02<00:00,  9.65it/s]
Processing SVEP1--MYLK:  96%|█████████▌| 23/24 [00:02<00:00,  9.65it/s]      
Processing SVEP1--MYLK: 100%|██████████| 24/24 [00:02<00:00,  9.65it/s]
Processing SVEP1--MYLK: 100%|██████████| 24/24 [00:02<00:00,  9.63it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory