File Info
- Filename
- aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.fusions.csv
- Full Path
- s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/ddab37cfd8abedab8c115459fdfdd9/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.fusions.csv
- Size
- 5.2 KB
- Task
- NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1)
- Attempt
Content
View in new tab| Fusion | Databases | Score | Explained score | arriba | starfusion |
| ASAP1--CCDC26 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr8:130187236#chr8:129223369,reading-frame: out-of-frame,type: deletion,split_reads1: 52,split_reads2: 3,discordant_mates: 2,coverage1: 1420,coverage2: 5,confidence: high | position: chr8:130187236:-#chr8:129223369:-,junction_reads: 58,spanning_reads: 1,ffmp: 0.1982 | |
| LINC00381--NKAIN2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr13:74426418:+#chr6:124355267:+,junction_reads: 33,spanning_reads: 0,ffmp: 0.088 | ||
| GUCY1B2--NKAIN2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr13:51080751:-#chr6:124355267:+,junction_reads: 27,spanning_reads: 0,ffmp: 0.0503 | ||
| TLK2P1--AC110079.1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr17:34039043#chr4:118595912,reading-frame: .,type: translocation,split_reads1: 11,split_reads2: 1,discordant_mates: 0,coverage1: 359,coverage2: 326,confidence: high | position: chr17:34039043:-#chr4:118595912:+,junction_reads: 14,spanning_reads: 0,ffmp: 0.0439 | |
| PRSS27--TPSB2 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr16:2713529:-#chr16:1228814:-,junction_reads: 13,spanning_reads: 0,ffmp: 0.0391 | |
| KCNMB2-AS1--ADGRL3 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr3:178860294:-#chr4:61676826:+,junction_reads: 11,spanning_reads: 0,ffmp: 0.0186 | ||
| BBOX1-AS1--ADGRL3 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr11:27220047:-#chr4:61676826:+,junction_reads: 11,spanning_reads: 0,ffmp: 0.0186 | ||
| TLK2--FAM157A | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:62560126:+#chr3:198180755:+,junction_reads: 11,spanning_reads: 1,ffmp: 0.0178 | ||
| PHLDB2--NECTIN3 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr3:111732703#chr3:111144899,reading-frame: .,type: duplication,split_reads1: 1,split_reads2: 8,discordant_mates: 0,coverage1: 534,coverage2: 290,confidence: high | position: chr3:111732703:+#chr3:111144899:+,junction_reads: 10,spanning_reads: 0,ffmp: 0.0337 | |
| AMDHD1--PROCR | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr12:95947437:+#chr20:35172089:+,junction_reads: 10,spanning_reads: 0,ffmp: 0.0337 | ||
| UBE2Q2P1--GOLGA6L10 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr15:84526781:-#chr15:82347629:-,junction_reads: 9,spanning_reads: 0,ffmp: 0.0304 | ||
| NECTIN3--PHLDB2 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr3:111147484#chr3:111845821,reading-frame: in-frame,type: deletion,split_reads1: 4,split_reads2: 4,discordant_mates: 0,coverage1: 260,coverage2: 696,confidence: high | position: chr3:111147484:+#chr3:111845821:+,junction_reads: 9,spanning_reads: 0,ffmp: 0.0304 | |
| FBXO25--AC240565.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr8:435707:+#chr17:106864:-,junction_reads: 9,spanning_reads: 0,ffmp: 0.0137 | ||
| PMS2P6--CCDC146 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr7:73097567:+#chr7:77167658:+,junction_reads: 8,spanning_reads: 5,ffmp: 0.0234 | ||
| TVP23C--CDRT4 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr17:15503098#chr17:15440285,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 62,split_reads2: 49,discordant_mates: 4,coverage1: 979,coverage2: 450,confidence: high | |
| STX16--NPEPL1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr20:58673711#chr20:58691724,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 41,split_reads2: 44,discordant_mates: 2,coverage1: 1907,coverage2: 253,confidence: high | ||
| LRCH1--GRID1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr13:46553703#chr10:85936953,reading-frame: out-of-frame,type: translocation/5'-5',split_reads1: 68,split_reads2: 11,discordant_mates: 0,coverage1: 1510,coverage2: 15,confidence: high | ||
| SELENOO--TUBGCP6 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr22:50206462#chr22:50232851,reading-frame: out-of-frame,type: deletion/read-through/5'-5',split_reads1: 40,split_reads2: 25,discordant_mates: 3,coverage1: 1271,coverage2: 117,confidence: high | ||
| CYCTP--PDE11A | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr2:178104302#chr2:178014460,reading-frame: .,type: deletion/read-through,split_reads1: 28,split_reads2: 19,discordant_mates: 2,coverage1: 352,coverage2: 141,confidence: high | ||
| AC015911.9--SLFN12L | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:35522279#chr17:35480195,reading-frame: .,type: deletion/read-through,split_reads1: 14,split_reads2: 19,discordant_mates: 4,coverage1: 303,coverage2: 182,confidence: high | ||
| NECTIN3--PLCXD2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr3:111147484#chr3:111729468,reading-frame: out-of-frame,type: deletion,split_reads1: 15,split_reads2: 6,discordant_mates: 0,coverage1: 260,coverage2: 14,confidence: high | ||
| PLCXD2--NECTIN3 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr3:111732703#chr3:111144899,reading-frame: stop-codon,type: duplication,split_reads1: 1,split_reads2: 8,discordant_mates: 0,coverage1: 534,coverage2: 290,confidence: high | ||
| AC092807.3--DDAH1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr1:85496166#chr1:85358847,reading-frame: .,type: deletion/read-through,split_reads1: 7,split_reads2: 13,discordant_mates: 0,coverage1: 23,coverage2: 127,confidence: high | ||
| SVEP1--MYLK | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr9:110417363#chr3:123831670,reading-frame: .,type: translocation,split_reads1: 3,split_reads2: 8,discordant_mates: 0,coverage1: 36,coverage2: 132,confidence: high |
25 rows