File Info

Filename
aih-tih-sc-eecf9f-R1_A23YTGFLT4_1.Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7d/a498b867134d48f1310326d9a6a3b5/aih-tih-sc-eecf9f-R1_A23YTGFLT4_1.Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 07:40:16
                             Started mapping on |	Jun 08 07:42:17
                                    Finished on |	Jun 08 08:57:18
       Mapping speed, Million of reads per hour |	236.92

                          Number of input reads |	296219478
                      Average input read length |	249
                                    UNIQUE READS:
                   Uniquely mapped reads number |	284661152
                        Uniquely mapped reads % |	96.10%
                          Average mapped length |	248.59
                       Number of splices: Total |	422589072
            Number of splices: Annotated (sjdb) |	419088683
                       Number of splices: GT/AG |	420326786
                       Number of splices: GC/AG |	1308792
                       Number of splices: AT/AC |	97157
               Number of splices: Non-canonical |	856337
                      Mismatch rate per base, % |	0.20%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.05
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.76
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	5910946
             % of reads mapped to multiple loci |	2.00%
        Number of reads mapped to too many loci |	125477
             % of reads mapped to too many loci |	0.04%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	801488
       % of reads unmapped: too many mismatches |	0.27%
            Number of reads unmapped: too short |	2527932
                 % of reads unmapped: too short |	0.85%
                Number of reads unmapped: other |	184531
                     % of reads unmapped: other |	0.06%
                                  CHIMERIC READS:
                       Number of chimeric reads |	3713420
                            % of chimeric reads |	1.25%