.command.sh - Workdir - NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:SEQTOOL_WHOLE_BAM_SATURATION (NTC_0001_0001_A23YTGFLT4_1)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/7b0375d78998b648d228f9fabf4d8c/.command.sh
Size: 183 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:SEQTOOL_WHOLE_BAM_SATURATION (NTC_0001_0001_A23YTGFLT4_1)
Attempt

Content

#!/bin/bash -euo pipefail
set -euxo pipefail

seqtool saturation -region 'chr20' \
    "NTC_0001_0001_A23YTGFLT4_1.md.bam" > NTC_0001_0001_A23YTGFLT4_1_full_bam_saturation_values.txt