Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/89/16ebf0d47f60e7e655d8c0f9b2b1f7/fi_workdir/aih-tih-sc-3270ab-R1_A23YTGFLT4_1.gtf
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4d/319ea6c255199cc6700be8b7012a36/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4d/319ea6c255199cc6700be8b7012a36/.command.run
==> STAGING COMPLETE (3 inputs)
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/agat_config.yaml file
------------------------------------------------------------------------------
| Another GFF Analysis Toolkit (AGAT) - Version: v1.2.0 |
| https://github.com/NBISweden/AGAT |
| National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se |
------------------------------------------------------------------------------
------ Start parsing ------
-------------------------- parse options and metadata --------------------------
=> Accessing the feature_levels YAML file
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/feature_levels.yaml file
=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag):
* locus_tag
* gene_id
=> merge_loci option deactivated
=> Machine information:
This script is being run by perl v5.32.1
Bioperl location being used: /usr/local/lib/perl5/site_perl/Bio/
Operating system being used: linux
=> Accessing Ontology
No ontology accessible from the gff file header!
We use the SOFA ontology distributed with AGAT:
/usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo
Read ontology /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo:
4 root terms, and 2596 total terms, and 1516 leaf terms
Filtering ontology:
We found 1861 terms that are sequence_feature or is_a child of it.
--------------------------------- parsing file ---------------------------------
=> Number of line in file: 7420
=> Number of comment lines: 0
=> Fasta included: No
=> Number of features lines: 7420
=> Number of feature type (3rd column): 2
* Level1: 0 =>
* level2: 0 =>
* level3: 2 => CDS exon
* unknown: 0 =>
=>Check because only level3 features:
* Number of feature with Parent attribute:0
* Number of feature with a common attribute:7420
=> Some common attributes and some Parent attributes missing.
/!\ For features where both are missing A single Level2 features (e.g. mRNA) and a single level1 (e.g. gene) will be created by AGAT, and all level3 feautres (e,g, CDS,exon) will be attached to them. This is probably not what you want...
see B. 2.2 and 3. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
/!\ For features where the common attribute or the parent attribute is missing, it would be fine as long as you do not expect isoforms in your annotation (Eukaryote). see B. 4. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
!! You might try to fix the issue by choosing a common tag attribute to use in order to group the features correctly (parameter --ct in agat_convert_sp_gxf2gxf.pl).
=> Version of the Bioperl GFF parser selected by AGAT: 2
------ End parsing (done in 2 second) ------
------ Start checks ------
---------------------------- Check1: feature types -----------------------------
----------------------------------- ontology -----------------------------------
All feature types in agreement with the Ontology.
------------------------------------- agat -------------------------------------
AGAT can deal with all the encountered feature types (3rd column)
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check2: duplicates ------------------------------
None found
------------------------------ done in 0 seconds -------------------------------
-------------------------- Check3: sequential bucket ---------------------------
Nothing to check as sequential bucket!
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check4: l2 linked to l3 ----------------------------
L1 and L2 created:
ABLIM1--WAPL HAVANA gene 3716 36981 . + . FI_gene_label "ABLIM1^ENSG00000099204.20" ; ID "ABLIM1--WAPL^ABLIM1^ENSG00000099204.20" ; ccdsid "CCDS7590.1" ; exon_id "ENSE00001647651.2" ; exon_number 1 ; gene_id "ABLIM1--WAPL^ABLIM1^ENSG00000099204.20" ; gene_name ABLIM1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019088.9" ; havana_transcript "OTTHUMT00000050469.3" ; hgnc_id "HGNC:78" ; level 2 ; orig_coord_info "chr10,114657957,114658200,-" ; protein_id "ENSP00000277895.5" ; tag basic appris_alternative_2 CCDS ; transcript_id "ABLIM1--WAPL^ENST00000277895.9" ; transcript_name "ABLIM1-201" ; transcript_support_level 5 ; transcript_type protein_coding
ABLIM1--WAPL HAVANA mRNA 3716 36981 . + . FI_gene_label "ABLIM1^ENSG00000099204.20" ; ID "ABLIM1--WAPL^ENST00000277895.9" ; Parent "ABLIM1--WAPL^ABLIM1^ENSG00000099204.20" ; ccdsid "CCDS7590.1" ; exon_id "ENSE00001647651.2" ; exon_number 1 ; gene_id "ABLIM1--WAPL^ABLIM1^ENSG00000099204.20" ; gene_name ABLIM1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019088.9" ; havana_transcript "OTTHUMT00000050469.3" ; hgnc_id "HGNC:78" ; level 2 ; orig_coord_info "chr10,114657957,114658200,-" ; protein_id "ENSP00000277895.5" ; tag basic appris_alternative_2 CCDS ; transcript_id "ABLIM1--WAPL^ENST00000277895.9" ; transcript_name "ABLIM1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
ABLIM1--WAPL HAVANA gene 44907 67688 . + . FI_gene_label "WAPL^ENSG00000062650.20" ; ID "ABLIM1--WAPL^WAPL^ENSG00000062650.20" ; ccdsid "CCDS7375.1" ; exon_id "ENSE00003287902.1" ; exon_number 2 ; gene_id "ABLIM1--WAPL^WAPL^ENSG00000062650.20" ; gene_name WAPL ; gene_type protein_coding ; havana_gene "OTTHUMG00000018651.4" ; havana_transcript "OTTHUMT00000049151.3" ; hgnc_id "HGNC:23293" ; level 2 ; orig_coord_info "chr10,86517571,86518069,-" ; protein_id "ENSP00000298767.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ABLIM1--WAPL^ENST00000298767.10" ; transcript_name "WAPL-201" ; transcript_support_level 1 ; transcript_type protein_coding
ABLIM1--WAPL HAVANA mRNA 44907 67688 . + . FI_gene_label "WAPL^ENSG00000062650.20" ; ID "ABLIM1--WAPL^ENST00000298767.10" ; Parent "ABLIM1--WAPL^WAPL^ENSG00000062650.20" ; ccdsid "CCDS7375.1" ; exon_id "ENSE00003287902.1" ; exon_number 2 ; gene_id "ABLIM1--WAPL^WAPL^ENSG00000062650.20" ; gene_name WAPL ; gene_type protein_coding ; havana_gene "OTTHUMG00000018651.4" ; havana_transcript "OTTHUMT00000049151.3" ; hgnc_id "HGNC:23293" ; level 2 ; orig_coord_info "chr10,86517571,86518069,-" ; protein_id "ENSP00000298767.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ABLIM1--WAPL^ENST00000298767.10" ; transcript_name "WAPL-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GSR--AC068672.1 HAVANA gene 1001 19980 . + . FI_gene_label "GSR^ENSG00000104687.14" ; ID "GSR--AC068672.1^GSR^ENSG00000104687.14" ; ccdsid "CCDS34877.1" ; exon_id "ENSE00001167123.7" ; exon_number 1 ; gene_id "GSR--AC068672.1^GSR^ENSG00000104687.14" ; gene_name GSR ; gene_type protein_coding ; havana_gene "OTTHUMG00000163946.9" ; havana_transcript "OTTHUMT00000376519.5" ; hgnc_id "HGNC:4623" ; level 2 ; orig_coord_info "chr8,30727530,30727835,-" ; protein_id "ENSP00000221130.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GSR--AC068672.1^ENST00000221130.11" ; transcript_name "GSR-201" ; transcript_support_level 1 ; transcript_type protein_coding
GSR--AC068672.1 HAVANA mRNA 1001 19980 . + . FI_gene_label "GSR^ENSG00000104687.14" ; ID "GSR--AC068672.1^ENST00000221130.11" ; Parent "GSR--AC068672.1^GSR^ENSG00000104687.14" ; ccdsid "CCDS34877.1" ; exon_id "ENSE00001167123.7" ; exon_number 1 ; gene_id "GSR--AC068672.1^GSR^ENSG00000104687.14" ; gene_name GSR ; gene_type protein_coding ; havana_gene "OTTHUMG00000163946.9" ; havana_transcript "OTTHUMT00000376519.5" ; hgnc_id "HGNC:4623" ; level 2 ; orig_coord_info "chr8,30727530,30727835,-" ; protein_id "ENSP00000221130.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GSR--AC068672.1^ENST00000221130.11" ; transcript_name "GSR-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GSR--AC090816.1 HAVANA gene 1001 19980 . + . FI_gene_label "GSR^ENSG00000104687.14" ; ID "GSR--AC090816.1^GSR^ENSG00000104687.14" ; ccdsid "CCDS34877.1" ; exon_id "ENSE00001167123.7" ; exon_number 1 ; gene_id "GSR--AC090816.1^GSR^ENSG00000104687.14" ; gene_name GSR ; gene_type protein_coding ; havana_gene "OTTHUMG00000163946.9" ; havana_transcript "OTTHUMT00000376519.5" ; hgnc_id "HGNC:4623" ; level 2 ; orig_coord_info "chr8,30727530,30727835,-" ; protein_id "ENSP00000221130.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GSR--AC090816.1^ENST00000221130.11" ; transcript_name "GSR-201" ; transcript_support_level 1 ; transcript_type protein_coding
GSR--AC090816.1 HAVANA mRNA 1001 19980 . + . FI_gene_label "GSR^ENSG00000104687.14" ; ID "GSR--AC090816.1^ENST00000221130.11" ; Parent "GSR--AC090816.1^GSR^ENSG00000104687.14" ; ccdsid "CCDS34877.1" ; exon_id "ENSE00001167123.7" ; exon_number 1 ; gene_id "GSR--AC090816.1^GSR^ENSG00000104687.14" ; gene_name GSR ; gene_type protein_coding ; havana_gene "OTTHUMG00000163946.9" ; havana_transcript "OTTHUMT00000376519.5" ; hgnc_id "HGNC:4623" ; level 2 ; orig_coord_info "chr8,30727530,30727835,-" ; protein_id "ENSP00000221130.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GSR--AC090816.1^ENST00000221130.11" ; transcript_name "GSR-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GSR--NRG1-IT3 HAVANA gene 1001 19980 . + . FI_gene_label "GSR^ENSG00000104687.14" ; ID "GSR--NRG1-IT3^GSR^ENSG00000104687.14" ; ccdsid "CCDS34877.1" ; exon_id "ENSE00001167123.7" ; exon_number 1 ; gene_id "GSR--NRG1-IT3^GSR^ENSG00000104687.14" ; gene_name GSR ; gene_type protein_coding ; havana_gene "OTTHUMG00000163946.9" ; havana_transcript "OTTHUMT00000376519.5" ; hgnc_id "HGNC:4623" ; level 2 ; orig_coord_info "chr8,30727530,30727835,-" ; protein_id "ENSP00000221130.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GSR--NRG1-IT3^ENST00000221130.11" ; transcript_name "GSR-201" ; transcript_support_level 1 ; transcript_type protein_coding
GSR--NRG1-IT3 HAVANA mRNA 1001 19980 . + . FI_gene_label "GSR^ENSG00000104687.14" ; ID "GSR--NRG1-IT3^ENST00000221130.11" ; Parent "GSR--NRG1-IT3^GSR^ENSG00000104687.14" ; ccdsid "CCDS34877.1" ; exon_id "ENSE00001167123.7" ; exon_number 1 ; gene_id "GSR--NRG1-IT3^GSR^ENSG00000104687.14" ; gene_name GSR ; gene_type protein_coding ; havana_gene "OTTHUMG00000163946.9" ; havana_transcript "OTTHUMT00000376519.5" ; hgnc_id "HGNC:4623" ; level 2 ; orig_coord_info "chr8,30727530,30727835,-" ; protein_id "ENSP00000221130.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GSR--NRG1-IT3^ENST00000221130.11" ; transcript_name "GSR-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GSR--NRG1 HAVANA gene 1001 19980 . + . FI_gene_label "GSR^ENSG00000104687.14" ; ID "GSR--NRG1^GSR^ENSG00000104687.14" ; ccdsid "CCDS34877.1" ; exon_id "ENSE00001167123.7" ; exon_number 1 ; gene_id "GSR--NRG1^GSR^ENSG00000104687.14" ; gene_name GSR ; gene_type protein_coding ; havana_gene "OTTHUMG00000163946.9" ; havana_transcript "OTTHUMT00000376519.5" ; hgnc_id "HGNC:4623" ; level 2 ; orig_coord_info "chr8,30727530,30727835,-" ; protein_id "ENSP00000221130.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GSR--NRG1^ENST00000221130.11" ; transcript_name "GSR-201" ; transcript_support_level 1 ; transcript_type protein_coding
GSR--NRG1 HAVANA mRNA 1001 19980 . + . FI_gene_label "GSR^ENSG00000104687.14" ; ID "GSR--NRG1^ENST00000221130.11" ; Parent "GSR--NRG1^GSR^ENSG00000104687.14" ; ccdsid "CCDS34877.1" ; exon_id "ENSE00001167123.7" ; exon_number 1 ; gene_id "GSR--NRG1^GSR^ENSG00000104687.14" ; gene_name GSR ; gene_type protein_coding ; havana_gene "OTTHUMG00000163946.9" ; havana_transcript "OTTHUMT00000376519.5" ; hgnc_id "HGNC:4623" ; level 2 ; orig_coord_info "chr8,30727530,30727835,-" ; protein_id "ENSP00000221130.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GSR--NRG1^ENST00000221130.11" ; transcript_name "GSR-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GSR--NRG1 HAVANA gene 30680 55473 . + . FI_gene_label "NRG1^ENSG00000157168.20" ; ID "GSR--NRG1^NRG1^ENSG00000157168.20" ; ccdsid "CCDS6083.1" ; exon_id "ENSE00003752907.2" ; exon_number 1 ; gene_id "GSR--NRG1^NRG1^ENSG00000157168.20" ; gene_name NRG1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163918.29" ; havana_transcript "OTTHUMT00000483442.1" ; hgnc_id "HGNC:7997" ; level 2 ; orig_coord_info "chr8,32548727,32548826,+" ; protein_id "ENSP00000287842.4" ; tag basic appris_alternative_2 CCDS ; transcript_id "GSR--NRG1^ENST00000287842.7" ; transcript_name "NRG1-201" ; transcript_support_level 1 ; transcript_type protein_coding
GSR--NRG1 HAVANA mRNA 30680 55473 . + . FI_gene_label "NRG1^ENSG00000157168.20" ; ID "GSR--NRG1^ENST00000287842.7" ; Parent "GSR--NRG1^NRG1^ENSG00000157168.20" ; ccdsid "CCDS6083.1" ; exon_id "ENSE00003752907.2" ; exon_number 1 ; gene_id "GSR--NRG1^NRG1^ENSG00000157168.20" ; gene_name NRG1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163918.29" ; havana_transcript "OTTHUMT00000483442.1" ; hgnc_id "HGNC:7997" ; level 2 ; orig_coord_info "chr8,32548727,32548826,+" ; protein_id "ENSP00000287842.4" ; tag basic appris_alternative_2 CCDS ; transcript_id "GSR--NRG1^ENST00000287842.7" ; transcript_name "NRG1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KLRC4--KLRK1 HAVANA gene 7417 15704 . + . FI_gene_label "KLRK1^ENSG00000213809.9" ; ID "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; ccdsid "CCDS8623.1" ; exon_id "ENSE00003640305.1" ; exon_number 2 ; gene_id "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; gene_name KLRK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168574.3" ; havana_transcript "OTTHUMT00000400269.2" ; hgnc_id "HGNC:18788" ; level 2 ; orig_coord_info "chr12,10388771,10388810,-" ; protein_id "ENSP00000240618.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000240618.11" ; transcript_name "KLRK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
KLRC4--KLRK1 HAVANA mRNA 7417 15704 . + . FI_gene_label "KLRK1^ENSG00000213809.9" ; ID "KLRC4--KLRK1^ENST00000240618.11" ; Parent "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; ccdsid "CCDS8623.1" ; exon_id "ENSE00003640305.1" ; exon_number 2 ; gene_id "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; gene_name KLRK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168574.3" ; havana_transcript "OTTHUMT00000400269.2" ; hgnc_id "HGNC:18788" ; level 2 ; orig_coord_info "chr12,10388771,10388810,-" ; protein_id "ENSP00000240618.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000240618.11" ; transcript_name "KLRK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KLRC4--KLRK1 HAVANA gene 1001 3376 . + . FI_gene_label "KLRC4^ENSG00000183542.5" ; ID "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; ccdsid "CCDS8624.1" ; exon_id "ENSE00001145174.1" ; exon_number 1 ; gene_id "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; gene_name KLRC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168575.2" ; havana_transcript "OTTHUMT00000400108.2" ; hgnc_id "HGNC:6377" ; level 2 ; orig_coord_info "chr12,10409389,10409575,-" ; protein_id "ENSP00000310216.1" ; tag basic appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000309384.2" ; transcript_name "KLRC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
KLRC4--KLRK1 HAVANA mRNA 1001 3376 . + . FI_gene_label "KLRC4^ENSG00000183542.5" ; ID "KLRC4--KLRK1^ENST00000309384.2" ; Parent "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; ccdsid "CCDS8624.1" ; exon_id "ENSE00001145174.1" ; exon_number 1 ; gene_id "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; gene_name KLRC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168575.2" ; havana_transcript "OTTHUMT00000400108.2" ; hgnc_id "HGNC:6377" ; level 2 ; orig_coord_info "chr12,10409389,10409575,-" ; protein_id "ENSP00000310216.1" ; tag basic appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000309384.2" ; transcript_name "KLRC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LRP12--ZFPM2 HAVANA gene 1001 16835 . + . FI_gene_label "LRP12^ENSG00000147650.12" ; ID "LRP12--ZFPM2^LRP12^ENSG00000147650.12" ; ccdsid "CCDS6303.1" ; exon_id "ENSE00002115998.2" ; exon_number 1 ; gene_id "LRP12--ZFPM2^LRP12^ENSG00000147650.12" ; gene_name LRP12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164892.6" ; havana_transcript "OTTHUMT00000380821.1" ; hgnc_id "HGNC:31708" ; level 2 ; orig_coord_info "chr8,104588819,104588897,-" ; protein_id "ENSP00000276654.5" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "LRP12--ZFPM2^ENST00000276654.10" ; transcript_name "LRP12-201" ; transcript_support_level 1 ; transcript_type protein_coding
LRP12--ZFPM2 HAVANA mRNA 1001 16835 . + . FI_gene_label "LRP12^ENSG00000147650.12" ; ID "LRP12--ZFPM2^ENST00000276654.10" ; Parent "LRP12--ZFPM2^LRP12^ENSG00000147650.12" ; ccdsid "CCDS6303.1" ; exon_id "ENSE00002115998.2" ; exon_number 1 ; gene_id "LRP12--ZFPM2^LRP12^ENSG00000147650.12" ; gene_name LRP12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164892.6" ; havana_transcript "OTTHUMT00000380821.1" ; hgnc_id "HGNC:31708" ; level 2 ; orig_coord_info "chr8,104588819,104588897,-" ; protein_id "ENSP00000276654.5" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "LRP12--ZFPM2^ENST00000276654.10" ; transcript_name "LRP12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LRP12--ZFPM2 HAVANA gene 28910 51308 . + . FI_gene_label "ZFPM2^ENSG00000169946.14" ; ID "LRP12--ZFPM2^ZFPM2^ENSG00000169946.14" ; ccdsid "CCDS47908.1" ; exon_id "ENSE00001549408.3" ; exon_number 1 ; gene_id "LRP12--ZFPM2^ZFPM2^ENSG00000169946.14" ; gene_name ZFPM2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164818.5" ; havana_transcript "OTTHUMT00000380614.2" ; hgnc_id "HGNC:16700" ; level 2 ; orig_coord_info "chr8,105318942,105318981,+" ; protein_id "ENSP00000384179.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LRP12--ZFPM2^ENST00000407775.7" ; transcript_name "ZFPM2-201" ; transcript_support_level 1 ; transcript_type protein_coding
LRP12--ZFPM2 HAVANA mRNA 28910 51308 . + . FI_gene_label "ZFPM2^ENSG00000169946.14" ; ID "LRP12--ZFPM2^ENST00000407775.7" ; Parent "LRP12--ZFPM2^ZFPM2^ENSG00000169946.14" ; ccdsid "CCDS47908.1" ; exon_id "ENSE00001549408.3" ; exon_number 1 ; gene_id "LRP12--ZFPM2^ZFPM2^ENSG00000169946.14" ; gene_name ZFPM2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164818.5" ; havana_transcript "OTTHUMT00000380614.2" ; hgnc_id "HGNC:16700" ; level 2 ; orig_coord_info "chr8,105318942,105318981,+" ; protein_id "ENSP00000384179.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LRP12--ZFPM2^ENST00000407775.7" ; transcript_name "ZFPM2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MACROD2--NRG1 HAVANA gene 1001 38517 . + . FI_gene_label "MACROD2^ENSG00000172264.17" ; ID "MACROD2--NRG1^MACROD2^ENSG00000172264.17" ; ccdsid "CCDS13120.2" ; exon_id "ENSE00001728314.1" ; exon_number 1 ; gene_id "MACROD2--NRG1^MACROD2^ENSG00000172264.17" ; gene_name MACROD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000031919.9" ; havana_transcript "OTTHUMT00000195553.3" ; hgnc_id "HGNC:16126" ; level 2 ; orig_coord_info "chr20,13995764,13995809,+" ; protein_id "ENSP00000217246.4" ; tag basic appris_principal_2 CCDS ; transcript_id "MACROD2--NRG1^ENST00000217246.8" ; transcript_name "MACROD2-201" ; transcript_support_level 2 ; transcript_type protein_coding
MACROD2--NRG1 HAVANA mRNA 1001 38517 . + . FI_gene_label "MACROD2^ENSG00000172264.17" ; ID "MACROD2--NRG1^ENST00000217246.8" ; Parent "MACROD2--NRG1^MACROD2^ENSG00000172264.17" ; ccdsid "CCDS13120.2" ; exon_id "ENSE00001728314.1" ; exon_number 1 ; gene_id "MACROD2--NRG1^MACROD2^ENSG00000172264.17" ; gene_name MACROD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000031919.9" ; havana_transcript "OTTHUMT00000195553.3" ; hgnc_id "HGNC:16126" ; level 2 ; orig_coord_info "chr20,13995764,13995809,+" ; protein_id "ENSP00000217246.4" ; tag basic appris_principal_2 CCDS ; transcript_id "MACROD2--NRG1^ENST00000217246.8" ; transcript_name "MACROD2-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
MACROD2--NRG1 HAVANA gene 49217 74010 . + . FI_gene_label "NRG1^ENSG00000157168.20" ; ID "MACROD2--NRG1^NRG1^ENSG00000157168.20" ; ccdsid "CCDS6083.1" ; exon_id "ENSE00003752907.2" ; exon_number 1 ; gene_id "MACROD2--NRG1^NRG1^ENSG00000157168.20" ; gene_name NRG1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163918.29" ; havana_transcript "OTTHUMT00000483442.1" ; hgnc_id "HGNC:7997" ; level 2 ; orig_coord_info "chr8,32548727,32548826,+" ; protein_id "ENSP00000287842.4" ; tag basic appris_alternative_2 CCDS ; transcript_id "MACROD2--NRG1^ENST00000287842.7" ; transcript_name "NRG1-201" ; transcript_support_level 1 ; transcript_type protein_coding
MACROD2--NRG1 HAVANA mRNA 49217 74010 . + . FI_gene_label "NRG1^ENSG00000157168.20" ; ID "MACROD2--NRG1^ENST00000287842.7" ; Parent "MACROD2--NRG1^NRG1^ENSG00000157168.20" ; ccdsid "CCDS6083.1" ; exon_id "ENSE00003752907.2" ; exon_number 1 ; gene_id "MACROD2--NRG1^NRG1^ENSG00000157168.20" ; gene_name NRG1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163918.29" ; havana_transcript "OTTHUMT00000483442.1" ; hgnc_id "HGNC:7997" ; level 2 ; orig_coord_info "chr8,32548727,32548826,+" ; protein_id "ENSP00000287842.4" ; tag basic appris_alternative_2 CCDS ; transcript_id "MACROD2--NRG1^ENST00000287842.7" ; transcript_name "NRG1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MLKL--CHSY1 HAVANA gene 17050 28462 . + . FI_gene_label "CHSY1^ENSG00000131873.7" ; ID "MLKL--CHSY1^CHSY1^ENSG00000131873.7" ; ccdsid "CCDS10390.1" ; exon_id "ENSE00001303865.2" ; exon_number 1 ; gene_id "MLKL--CHSY1^CHSY1^ENSG00000131873.7" ; gene_name CHSY1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000149873.4" ; havana_transcript "OTTHUMT00000313624.2" ; hgnc_id "HGNC:17198" ; level 2 ; orig_coord_info "chr15,101251137,101251456,-" ; protein_id "ENSP00000254190.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MLKL--CHSY1^ENST00000254190.4" ; transcript_name "CHSY1-201" ; transcript_support_level 1 ; transcript_type protein_coding
MLKL--CHSY1 HAVANA mRNA 17050 28462 . + . FI_gene_label "CHSY1^ENSG00000131873.7" ; ID "MLKL--CHSY1^ENST00000254190.4" ; Parent "MLKL--CHSY1^CHSY1^ENSG00000131873.7" ; ccdsid "CCDS10390.1" ; exon_id "ENSE00001303865.2" ; exon_number 1 ; gene_id "MLKL--CHSY1^CHSY1^ENSG00000131873.7" ; gene_name CHSY1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000149873.4" ; havana_transcript "OTTHUMT00000313624.2" ; hgnc_id "HGNC:17198" ; level 2 ; orig_coord_info "chr15,101251137,101251456,-" ; protein_id "ENSP00000254190.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MLKL--CHSY1^ENST00000254190.4" ; transcript_name "CHSY1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MLKL--CHSY1 HAVANA gene 1171 14049 . + . FI_gene_label "MLKL^ENSG00000168404.13" ; ID "MLKL--CHSY1^MLKL^ENSG00000168404.13" ; ccdsid "CCDS45528.1" ; exon_id "ENSE00001204481.4" ; exon_number 2 ; gene_id "MLKL--CHSY1^MLKL^ENSG00000168404.13" ; gene_name MLKL ; gene_type protein_coding ; havana_gene "OTTHUMG00000177356.7" ; havana_transcript "OTTHUMT00000436402.1" ; hgnc_id "HGNC:26617" ; level 2 ; orig_coord_info "chr16,74695298,74695757,-" ; protein_id "ENSP00000303118.7" ; tag basic CCDS ; transcript_id "MLKL--CHSY1^ENST00000306247.11" ; transcript_name "MLKL-201" ; transcript_support_level 1 ; transcript_type protein_coding
MLKL--CHSY1 HAVANA mRNA 1171 14049 . + . FI_gene_label "MLKL^ENSG00000168404.13" ; ID "MLKL--CHSY1^ENST00000306247.11" ; Parent "MLKL--CHSY1^MLKL^ENSG00000168404.13" ; ccdsid "CCDS45528.1" ; exon_id "ENSE00001204481.4" ; exon_number 2 ; gene_id "MLKL--CHSY1^MLKL^ENSG00000168404.13" ; gene_name MLKL ; gene_type protein_coding ; havana_gene "OTTHUMG00000177356.7" ; havana_transcript "OTTHUMT00000436402.1" ; hgnc_id "HGNC:26617" ; level 2 ; orig_coord_info "chr16,74695298,74695757,-" ; protein_id "ENSP00000303118.7" ; tag basic CCDS ; transcript_id "MLKL--CHSY1^ENST00000306247.11" ; transcript_name "MLKL-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MLKL--SELENOS HAVANA gene 1171 14049 . + . FI_gene_label "MLKL^ENSG00000168404.13" ; ID "MLKL--SELENOS^MLKL^ENSG00000168404.13" ; ccdsid "CCDS45528.1" ; exon_id "ENSE00001204481.4" ; exon_number 2 ; gene_id "MLKL--SELENOS^MLKL^ENSG00000168404.13" ; gene_name MLKL ; gene_type protein_coding ; havana_gene "OTTHUMG00000177356.7" ; havana_transcript "OTTHUMT00000436402.1" ; hgnc_id "HGNC:26617" ; level 2 ; orig_coord_info "chr16,74695298,74695757,-" ; protein_id "ENSP00000303118.7" ; tag basic CCDS ; transcript_id "MLKL--SELENOS^ENST00000306247.11" ; transcript_name "MLKL-201" ; transcript_support_level 1 ; transcript_type protein_coding
MLKL--SELENOS HAVANA mRNA 1171 14049 . + . FI_gene_label "MLKL^ENSG00000168404.13" ; ID "MLKL--SELENOS^ENST00000306247.11" ; Parent "MLKL--SELENOS^MLKL^ENSG00000168404.13" ; ccdsid "CCDS45528.1" ; exon_id "ENSE00001204481.4" ; exon_number 2 ; gene_id "MLKL--SELENOS^MLKL^ENSG00000168404.13" ; gene_name MLKL ; gene_type protein_coding ; havana_gene "OTTHUMG00000177356.7" ; havana_transcript "OTTHUMT00000436402.1" ; hgnc_id "HGNC:26617" ; level 2 ; orig_coord_info "chr16,74695298,74695757,-" ; protein_id "ENSP00000303118.7" ; tag basic CCDS ; transcript_id "MLKL--SELENOS^ENST00000306247.11" ; transcript_name "MLKL-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MLKL--SELENOS HAVANA gene 17100 23351 . + . FI_gene_label "SELENOS^ENSG00000131871.15" ; ID "MLKL--SELENOS^SELENOS^ENSG00000131871.15" ; ccdsid "CCDS53979.1" ; exon_id "ENSE00002186657.1" ; exon_number 1 ; gene_id "MLKL--SELENOS^SELENOS^ENSG00000131871.15" ; gene_name SELENOS ; gene_type protein_coding ; havana_gene "OTTHUMG00000166441.6" ; havana_transcript "OTTHUMT00000389784.2" ; hgnc_id "HGNC:30396" ; level 2 ; orig_coord_info "chr15,101277342,101277417,-" ; protein_id "ENSP00000381282.3" ; tag basic appris_principal_1 CCDS seleno ; transcript_id "MLKL--SELENOS^ENST00000398226.7" ; transcript_name "SELENOS-201" ; transcript_support_level 1 ; transcript_type protein_coding
MLKL--SELENOS HAVANA mRNA 17100 23351 . + . FI_gene_label "SELENOS^ENSG00000131871.15" ; ID "MLKL--SELENOS^ENST00000398226.7" ; Parent "MLKL--SELENOS^SELENOS^ENSG00000131871.15" ; ccdsid "CCDS53979.1" ; exon_id "ENSE00002186657.1" ; exon_number 1 ; gene_id "MLKL--SELENOS^SELENOS^ENSG00000131871.15" ; gene_name SELENOS ; gene_type protein_coding ; havana_gene "OTTHUMG00000166441.6" ; havana_transcript "OTTHUMT00000389784.2" ; hgnc_id "HGNC:30396" ; level 2 ; orig_coord_info "chr15,101277342,101277417,-" ; protein_id "ENSP00000381282.3" ; tag basic appris_principal_1 CCDS seleno ; transcript_id "MLKL--SELENOS^ENST00000398226.7" ; transcript_name "SELENOS-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHA13 HAVANA gene 16359 24799 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA10--PCDHA13 HAVANA mRNA 16359 24799 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA10--PCDHA13^ENST00000289272.3" ; Parent "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHA13 HAVANA gene 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA10--PCDHA13 HAVANA mRNA 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHA13^ENST00000562220.2" ; Parent "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC1 HAVANA gene 16359 26374 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA10--PCDHAC1 HAVANA mRNA 16359 26374 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA10--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC1 HAVANA gene 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA10--PCDHAC1 HAVANA mRNA 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC1^ENST00000562220.2" ; Parent "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC2 HAVANA gene 16365 27100 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA10--PCDHAC2 HAVANA mRNA 16365 27100 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA10--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC2 HAVANA gene 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA10--PCDHAC2 HAVANA mRNA 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC2^ENST00000562220.2" ; Parent "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHA13 HAVANA gene 14666 23106 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA4--PCDHA13 HAVANA mRNA 14666 23106 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA4--PCDHA13^ENST00000289272.3" ; Parent "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHA13 ENSEMBL gene 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHA13^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
PCDHA4--PCDHA13 ENSEMBL mRNA 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHA13^ENST00000378125.4" ; Parent "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHA13^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC1 HAVANA gene 14666 24681 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA4--PCDHAC1 HAVANA mRNA 14666 24681 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA4--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC1 ENSEMBL gene 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC1^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
PCDHA4--PCDHAC1 ENSEMBL mRNA 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC1^ENST00000378125.4" ; Parent "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC1^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC2 HAVANA gene 14672 25407 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA4--PCDHAC2 HAVANA mRNA 14672 25407 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA4--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC2 ENSEMBL gene 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC2^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
PCDHA4--PCDHAC2 ENSEMBL mRNA 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC2^ENST00000378125.4" ; Parent "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC2^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PRSS27--TPSB2 HAVANA gene 1328 8540 . + . FI_gene_label "PRSS27^ENSG00000172382.10" ; ID "PRSS27--TPSB2^PRSS27^ENSG00000172382.10" ; ccdsid "CCDS10476.1" ; exon_id "ENSE00001215985.4" ; exon_number 1 ; gene_id "PRSS27--TPSB2^PRSS27^ENSG00000172382.10" ; gene_name PRSS27 ; gene_type protein_coding ; havana_gene "OTTHUMG00000128929.3" ; havana_transcript "OTTHUMT00000250908.2" ; hgnc_id "HGNC:15475" ; level 2 ; orig_coord_info "chr16,2720115,2720160,-" ; protein_id "ENSP00000306390.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PRSS27--TPSB2^ENST00000302641.8" ; transcript_name "PRSS27-201" ; transcript_support_level 1 ; transcript_type protein_coding
PRSS27--TPSB2 HAVANA mRNA 1328 8540 . + . FI_gene_label "PRSS27^ENSG00000172382.10" ; ID "PRSS27--TPSB2^ENST00000302641.8" ; Parent "PRSS27--TPSB2^PRSS27^ENSG00000172382.10" ; ccdsid "CCDS10476.1" ; exon_id "ENSE00001215985.4" ; exon_number 1 ; gene_id "PRSS27--TPSB2^PRSS27^ENSG00000172382.10" ; gene_name PRSS27 ; gene_type protein_coding ; havana_gene "OTTHUMG00000128929.3" ; havana_transcript "OTTHUMT00000250908.2" ; hgnc_id "HGNC:15475" ; level 2 ; orig_coord_info "chr16,2720115,2720160,-" ; protein_id "ENSP00000306390.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PRSS27--TPSB2^ENST00000302641.8" ; transcript_name "PRSS27-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PRSS27--TPSB2 HAVANA gene 11544 13392 . + . FI_gene_label "TPSB2^ENSG00000197253.13" ; ID "PRSS27--TPSB2^TPSB2^ENSG00000197253.13" ; exon_id "ENSE00003747406.1" ; exon_number 2 ; gene_id "PRSS27--TPSB2^TPSB2^ENSG00000197253.13" ; gene_name TPSB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155926.4" ; havana_transcript "OTTHUMT00000342363.2" ; hgnc_id "HGNC:14120" ; level 2 ; orig_coord_info "chr16,1229891,1229951,-" ; protein_id "ENSP00000482743.1" ; tag basic MANE_Select appris_principal_4 ; transcript_id "PRSS27--TPSB2^ENST00000606293.5" ; transcript_name "TPSB2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PRSS27--TPSB2 HAVANA mRNA 11544 13392 . + . FI_gene_label "TPSB2^ENSG00000197253.13" ; ID "PRSS27--TPSB2^ENST00000606293.5" ; Parent "PRSS27--TPSB2^TPSB2^ENSG00000197253.13" ; exon_id "ENSE00003747406.1" ; exon_number 2 ; gene_id "PRSS27--TPSB2^TPSB2^ENSG00000197253.13" ; gene_name TPSB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155926.4" ; havana_transcript "OTTHUMT00000342363.2" ; hgnc_id "HGNC:14120" ; level 2 ; orig_coord_info "chr16,1229891,1229951,-" ; protein_id "ENSP00000482743.1" ; tag basic MANE_Select appris_principal_4 ; transcript_id "PRSS27--TPSB2^ENST00000606293.5" ; transcript_name "TPSB2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SEC24B--CDKL2 HAVANA gene 1044 27878 . + . FI_gene_label "SEC24B^ENSG00000138802.11" ; ID "SEC24B--CDKL2^SEC24B^ENSG00000138802.11" ; ccdsid "CCDS47124.1" ; exon_id "ENSE00002081193.1" ; exon_number 1 ; gene_id "SEC24B--CDKL2^SEC24B^ENSG00000138802.11" ; gene_name SEC24B ; gene_type protein_coding ; havana_gene "OTTHUMG00000161372.3" ; havana_transcript "OTTHUMT00000364693.2" ; hgnc_id "HGNC:10704" ; level 2 ; orig_coord_info "chr4,109433870,109434002,+" ; protein_id "ENSP00000265175.4" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "SEC24B--CDKL2^ENST00000265175.5" ; transcript_name "SEC24B-201" ; transcript_support_level 1 ; transcript_type protein_coding
SEC24B--CDKL2 HAVANA mRNA 1044 27878 . + . FI_gene_label "SEC24B^ENSG00000138802.11" ; ID "SEC24B--CDKL2^ENST00000265175.5" ; Parent "SEC24B--CDKL2^SEC24B^ENSG00000138802.11" ; ccdsid "CCDS47124.1" ; exon_id "ENSE00002081193.1" ; exon_number 1 ; gene_id "SEC24B--CDKL2^SEC24B^ENSG00000138802.11" ; gene_name SEC24B ; gene_type protein_coding ; havana_gene "OTTHUMG00000161372.3" ; havana_transcript "OTTHUMT00000364693.2" ; hgnc_id "HGNC:10704" ; level 2 ; orig_coord_info "chr4,109433870,109434002,+" ; protein_id "ENSP00000265175.4" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "SEC24B--CDKL2^ENST00000265175.5" ; transcript_name "SEC24B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SEC24B--CDKL2 HAVANA gene 31067 47822 . + . FI_gene_label "CDKL2^ENSG00000138769.11" ; ID "SEC24B--CDKL2^CDKL2^ENSG00000138769.11" ; ccdsid "CCDS82933.1" ; exon_id "ENSE00001285092.1" ; exon_number 2 ; gene_id "SEC24B--CDKL2^CDKL2^ENSG00000138769.11" ; gene_name CDKL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130103.3" ; havana_transcript "OTTHUMT00000362891.2" ; hgnc_id "HGNC:1782" ; level 1 ; orig_coord_info "chr4,75625821,75625988,-" ; protein_id "ENSP00000306340.4" ; tag basic MANE_Select appris_principal_4 exp_conf CCDS ; transcript_id "SEC24B--CDKL2^ENST00000307465.9" ; transcript_name "CDKL2-201" ; transcript_support_level 2 ; transcript_type protein_coding
SEC24B--CDKL2 HAVANA mRNA 31067 47822 . + . FI_gene_label "CDKL2^ENSG00000138769.11" ; ID "SEC24B--CDKL2^ENST00000307465.9" ; Parent "SEC24B--CDKL2^CDKL2^ENSG00000138769.11" ; ccdsid "CCDS82933.1" ; exon_id "ENSE00001285092.1" ; exon_number 2 ; gene_id "SEC24B--CDKL2^CDKL2^ENSG00000138769.11" ; gene_name CDKL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130103.3" ; havana_transcript "OTTHUMT00000362891.2" ; hgnc_id "HGNC:1782" ; level 1 ; orig_coord_info "chr4,75625821,75625988,-" ; protein_id "ENSP00000306340.4" ; tag basic MANE_Select appris_principal_4 exp_conf CCDS ; transcript_id "SEC24B--CDKL2^ENST00000307465.9" ; transcript_name "CDKL2-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
SRSF3--UHRF1BP1 HAVANA gene 14073 35016 . + . FI_gene_label "UHRF1BP1^ENSG00000065060.17" ; ID "SRSF3--UHRF1BP1^UHRF1BP1^ENSG00000065060.17" ; ccdsid "CCDS43455.1" ; exon_id "ENSE00001536064.4" ; exon_number 1 ; gene_id "SRSF3--UHRF1BP1^UHRF1BP1^ENSG00000065060.17" ; gene_name UHRF1BP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014557.2" ; havana_transcript "OTTHUMT00000040260.2" ; hgnc_id "HGNC:21216" ; level 2 ; orig_coord_info "chr6,34792251,34792294,+" ; protein_id "ENSP00000192788.5" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "SRSF3--UHRF1BP1^ENST00000192788.6" ; transcript_name "UHRF1BP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
SRSF3--UHRF1BP1 HAVANA mRNA 14073 35016 . + . FI_gene_label "UHRF1BP1^ENSG00000065060.17" ; ID "SRSF3--UHRF1BP1^ENST00000192788.6" ; Parent "SRSF3--UHRF1BP1^UHRF1BP1^ENSG00000065060.17" ; ccdsid "CCDS43455.1" ; exon_id "ENSE00001536064.4" ; exon_number 1 ; gene_id "SRSF3--UHRF1BP1^UHRF1BP1^ENSG00000065060.17" ; gene_name UHRF1BP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014557.2" ; havana_transcript "OTTHUMT00000040260.2" ; hgnc_id "HGNC:21216" ; level 2 ; orig_coord_info "chr6,34792251,34792294,+" ; protein_id "ENSP00000192788.5" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "SRSF3--UHRF1BP1^ENST00000192788.6" ; transcript_name "UHRF1BP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SRSF3--UHRF1BP1 HAVANA gene 1010 11004 . + . FI_gene_label "SRSF3^ENSG00000112081.17" ; ID "SRSF3--UHRF1BP1^SRSF3^ENSG00000112081.17" ; ccdsid "CCDS4823.1" ; exon_id "ENSE00003735440.1" ; exon_number 2 ; gene_id "SRSF3--UHRF1BP1^SRSF3^ENSG00000112081.17" ; gene_name SRSF3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014599.8" ; havana_transcript "OTTHUMT00000040347.3" ; hgnc_id "HGNC:10785" ; level 2 ; orig_coord_info "chr6,36596763,36596968,+" ; protein_id "ENSP00000362820.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SRSF3--UHRF1BP1^ENST00000373715.11" ; transcript_name "SRSF3-202" ; transcript_support_level 1 ; transcript_type protein_coding
SRSF3--UHRF1BP1 HAVANA mRNA 1010 11004 . + . FI_gene_label "SRSF3^ENSG00000112081.17" ; ID "SRSF3--UHRF1BP1^ENST00000373715.11" ; Parent "SRSF3--UHRF1BP1^SRSF3^ENSG00000112081.17" ; ccdsid "CCDS4823.1" ; exon_id "ENSE00003735440.1" ; exon_number 2 ; gene_id "SRSF3--UHRF1BP1^SRSF3^ENSG00000112081.17" ; gene_name SRSF3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014599.8" ; havana_transcript "OTTHUMT00000040347.3" ; hgnc_id "HGNC:10785" ; level 2 ; orig_coord_info "chr6,36596763,36596968,+" ; protein_id "ENSP00000362820.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SRSF3--UHRF1BP1^ENST00000373715.11" ; transcript_name "SRSF3-202" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
STX16--NPEPL1 HAVANA gene 1021 7754 . + . FI_gene_label "STX16^ENSG00000124222.22" ; ID "STX16--NPEPL1^STX16^ENSG00000124222.22" ; exon_id "ENSE00003459479.1" ; exon_number 3 ; gene_id "STX16--NPEPL1^STX16^ENSG00000124222.22" ; gene_name STX16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033084.8" ; havana_transcript "OTTHUMT00000267911.2" ; hgnc_id "HGNC:11431" ; level 2 ; orig_coord_info "chr20,58667505,58667597,+" ; protein_id "ENSP00000312086.8" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "STX16--NPEPL1^ENST00000312283.12" ; transcript_name "STX16-201" ; transcript_support_level 3 ; transcript_type protein_coding
STX16--NPEPL1 HAVANA mRNA 1021 7754 . + . FI_gene_label "STX16^ENSG00000124222.22" ; ID "STX16--NPEPL1^ENST00000312283.12" ; Parent "STX16--NPEPL1^STX16^ENSG00000124222.22" ; exon_id "ENSE00003459479.1" ; exon_number 3 ; gene_id "STX16--NPEPL1^STX16^ENSG00000124222.22" ; gene_name STX16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033084.8" ; havana_transcript "OTTHUMT00000267911.2" ; hgnc_id "HGNC:11431" ; level 2 ; orig_coord_info "chr20,58667505,58667597,+" ; protein_id "ENSP00000312086.8" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "STX16--NPEPL1^ENST00000312283.12" ; transcript_name "STX16-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
STX16--NPEPL1 HAVANA gene 18353 29399 . + . FI_gene_label "NPEPL1^ENSG00000215440.12" ; ID "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; ccdsid "CCDS46621.1" ; exon_id "ENSE00001408052.7" ; exon_number 1 ; gene_id "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; gene_name NPEPL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033060.8" ; havana_transcript "OTTHUMT00000080402.7" ; hgnc_id "HGNC:16244" ; level 2 ; orig_coord_info "chr20,58692901,58693050,+" ; protein_id "ENSP00000348395.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STX16--NPEPL1^ENST00000356091.11" ; transcript_name "NPEPL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
STX16--NPEPL1 HAVANA mRNA 18353 29399 . + . FI_gene_label "NPEPL1^ENSG00000215440.12" ; ID "STX16--NPEPL1^ENST00000356091.11" ; Parent "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; ccdsid "CCDS46621.1" ; exon_id "ENSE00001408052.7" ; exon_number 1 ; gene_id "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; gene_name NPEPL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033060.8" ; havana_transcript "OTTHUMT00000080402.7" ; hgnc_id "HGNC:16244" ; level 2 ; orig_coord_info "chr20,58692901,58693050,+" ; protein_id "ENSP00000348395.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STX16--NPEPL1^ENST00000356091.11" ; transcript_name "NPEPL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TAF15--AP2B1 HAVANA gene 40620 43525 . + . FI_gene_label "AP2B1^ENSG00000006125.18" ; ID "TAF15--AP2B1^AP2B1^ENSG00000006125.18" ; exon_id "ENSE00002814630.1" ; exon_number 1 ; gene_id "TAF15--AP2B1^AP2B1^ENSG00000006125.18" ; gene_name AP2B1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179924.5" ; havana_transcript "OTTHUMT00000448985.1" ; hgnc_id "HGNC:563" ; level 1 ; orig_coord_info "chr17,35650650,35650789,+" ; protein_id "ENSP00000466580.1" ; tag mRNA_start_NF cds_start_NF exp_conf ; transcript_id "TAF15--AP2B1^ENST00000587805.1" ; transcript_name "AP2B1-201" ; transcript_support_level 2 ; transcript_type protein_coding
TAF15--AP2B1 HAVANA mRNA 40620 43525 . + . FI_gene_label "AP2B1^ENSG00000006125.18" ; ID "TAF15--AP2B1^ENST00000587805.1" ; Parent "TAF15--AP2B1^AP2B1^ENSG00000006125.18" ; exon_id "ENSE00002814630.1" ; exon_number 1 ; gene_id "TAF15--AP2B1^AP2B1^ENSG00000006125.18" ; gene_name AP2B1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179924.5" ; havana_transcript "OTTHUMT00000448985.1" ; hgnc_id "HGNC:563" ; level 1 ; orig_coord_info "chr17,35650650,35650789,+" ; protein_id "ENSP00000466580.1" ; tag mRNA_start_NF cds_start_NF exp_conf ; transcript_id "TAF15--AP2B1^ENST00000587805.1" ; transcript_name "AP2B1-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
TAF15--AP2B1 HAVANA gene 2010 16092 . + . FI_gene_label "TAF15^ENSG00000270647.6" ; ID "TAF15--AP2B1^TAF15^ENSG00000270647.6" ; exon_id "ENSE00003682812.1" ; exon_number 5 ; gene_id "TAF15--AP2B1^TAF15^ENSG00000270647.6" ; gene_name TAF15 ; gene_type protein_coding ; havana_gene "OTTHUMG00000188384.3" ; havana_transcript "OTTHUMT00000477049.1" ; hgnc_id "HGNC:11547" ; level 2 ; orig_coord_info "chr17,35820421,35820437,+" ; protein_id "ENSP00000474653.1" ; transcript_id "TAF15--AP2B1^ENST00000603393.5" ; transcript_name "TAF15-203" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
TAF15--AP2B1 HAVANA mRNA 2010 16092 . + . FI_gene_label "TAF15^ENSG00000270647.6" ; ID "TAF15--AP2B1^ENST00000603393.5" ; Parent "TAF15--AP2B1^TAF15^ENSG00000270647.6" ; exon_id "ENSE00003682812.1" ; exon_number 5 ; gene_id "TAF15--AP2B1^TAF15^ENSG00000270647.6" ; gene_name TAF15 ; gene_type protein_coding ; havana_gene "OTTHUMG00000188384.3" ; havana_transcript "OTTHUMT00000477049.1" ; hgnc_id "HGNC:11547" ; level 2 ; orig_coord_info "chr17,35820421,35820437,+" ; protein_id "ENSP00000474653.1" ; transcript_id "TAF15--AP2B1^ENST00000603393.5" ; transcript_name "TAF15-203" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
TLK2--AL669831.1 HAVANA gene 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AL669831.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AL669831.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AL669831.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TLK2--AL669831.1 HAVANA mRNA 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AL669831.1^ENST00000326270.13" ; Parent "TLK2--AL669831.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AL669831.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AL669831.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^ENST00000225576.7" ; Parent "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^ENST00000619038.5" ; Parent "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
UHRF1BP1--EYS HAVANA gene 1069 22012 . + . FI_gene_label "UHRF1BP1^ENSG00000065060.17" ; ID "UHRF1BP1--EYS^UHRF1BP1^ENSG00000065060.17" ; ccdsid "CCDS43455.1" ; exon_id "ENSE00001536064.4" ; exon_number 1 ; gene_id "UHRF1BP1--EYS^UHRF1BP1^ENSG00000065060.17" ; gene_name UHRF1BP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014557.2" ; havana_transcript "OTTHUMT00000040260.2" ; hgnc_id "HGNC:21216" ; level 2 ; orig_coord_info "chr6,34792251,34792294,+" ; protein_id "ENSP00000192788.5" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "UHRF1BP1--EYS^ENST00000192788.6" ; transcript_name "UHRF1BP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
UHRF1BP1--EYS HAVANA mRNA 1069 22012 . + . FI_gene_label "UHRF1BP1^ENSG00000065060.17" ; ID "UHRF1BP1--EYS^ENST00000192788.6" ; Parent "UHRF1BP1--EYS^UHRF1BP1^ENSG00000065060.17" ; ccdsid "CCDS43455.1" ; exon_id "ENSE00001536064.4" ; exon_number 1 ; gene_id "UHRF1BP1--EYS^UHRF1BP1^ENSG00000065060.17" ; gene_name UHRF1BP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014557.2" ; havana_transcript "OTTHUMT00000040260.2" ; hgnc_id "HGNC:21216" ; level 2 ; orig_coord_info "chr6,34792251,34792294,+" ; protein_id "ENSP00000192788.5" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "UHRF1BP1--EYS^ENST00000192788.6" ; transcript_name "UHRF1BP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
UHRF1BP1--EYS HAVANA gene 29498 41031 . + . FI_gene_label "EYS^ENSG00000188107.15" ; ID "UHRF1BP1--EYS^EYS^ENSG00000188107.15" ; ccdsid "CCDS4967.1" ; exon_id "ENSE00003593910.1" ; exon_number 2 ; gene_id "UHRF1BP1--EYS^EYS^ENSG00000188107.15" ; gene_name EYS ; gene_type protein_coding ; havana_gene "OTTHUMG00000014971.11" ; havana_transcript "OTTHUMT00000277086.1" ; hgnc_id "HGNC:21555" ; level 1 ; orig_coord_info "chr6,65494663,65495410,-" ; protein_id "ENSP00000341818.5" ; tag basic exp_conf CCDS ; transcript_id "UHRF1BP1--EYS^ENST00000342421.9" ; transcript_name "EYS-202" ; transcript_support_level 1 ; transcript_type protein_coding
UHRF1BP1--EYS HAVANA mRNA 29498 41031 . + . FI_gene_label "EYS^ENSG00000188107.15" ; ID "UHRF1BP1--EYS^ENST00000342421.9" ; Parent "UHRF1BP1--EYS^EYS^ENSG00000188107.15" ; ccdsid "CCDS4967.1" ; exon_id "ENSE00003593910.1" ; exon_number 2 ; gene_id "UHRF1BP1--EYS^EYS^ENSG00000188107.15" ; gene_name EYS ; gene_type protein_coding ; havana_gene "OTTHUMG00000014971.11" ; havana_transcript "OTTHUMT00000277086.1" ; hgnc_id "HGNC:21555" ; level 1 ; orig_coord_info "chr6,65494663,65495410,-" ; protein_id "ENSP00000341818.5" ; tag basic exp_conf CCDS ; transcript_id "UHRF1BP1--EYS^ENST00000342421.9" ; transcript_name "EYS-202" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZNF318--DST HAVANA gene 46950 154237 . + . FI_gene_label "DST^ENSG00000151914.21" ; ID "ZNF318--DST^DST^ENSG00000151914.21" ; ccdsid "CCDS47443.1" ; exon_id "ENSE00002133064.1" ; exon_number 1 ; gene_id "ZNF318--DST^DST^ENSG00000151914.21" ; gene_name DST ; gene_type protein_coding ; havana_gene "OTTHUMG00000014913.26" ; havana_transcript "OTTHUMT00000041022.4" ; hgnc_id "HGNC:1090" ; level 2 ; orig_coord_info "chr6,56642622,56642788,-" ; protein_id "ENSP00000244364.6" ; tag basic CCDS ; transcript_id "ZNF318--DST^ENST00000244364.10" ; transcript_name "DST-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZNF318--DST HAVANA mRNA 46950 154237 . + . FI_gene_label "DST^ENSG00000151914.21" ; ID "ZNF318--DST^ENST00000244364.10" ; Parent "ZNF318--DST^DST^ENSG00000151914.21" ; ccdsid "CCDS47443.1" ; exon_id "ENSE00002133064.1" ; exon_number 1 ; gene_id "ZNF318--DST^DST^ENSG00000151914.21" ; gene_name DST ; gene_type protein_coding ; havana_gene "OTTHUMG00000014913.26" ; havana_transcript "OTTHUMT00000041022.4" ; hgnc_id "HGNC:1090" ; level 2 ; orig_coord_info "chr6,56642622,56642788,-" ; protein_id "ENSP00000244364.6" ; tag basic CCDS ; transcript_id "ZNF318--DST^ENST00000244364.10" ; transcript_name "DST-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZNF318--DST HAVANA gene 1001 16941 . + . FI_gene_label "ZNF318^ENSG00000171467.16" ; ID "ZNF318--DST^ZNF318^ENSG00000171467.16" ; ccdsid "CCDS4895.2" ; exon_id "ENSE00001612696.2" ; exon_number 1 ; gene_id "ZNF318--DST^ZNF318^ENSG00000171467.16" ; gene_name ZNF318 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014732.4" ; havana_transcript "OTTHUMT00000040601.3" ; hgnc_id "HGNC:13578" ; level 2 ; orig_coord_info "chr6,43368967,43369365,-" ; protein_id "ENSP00000354964.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZNF318--DST^ENST00000361428.3" ; transcript_name "ZNF318-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZNF318--DST HAVANA mRNA 1001 16941 . + . FI_gene_label "ZNF318^ENSG00000171467.16" ; ID "ZNF318--DST^ENST00000361428.3" ; Parent "ZNF318--DST^ZNF318^ENSG00000171467.16" ; ccdsid "CCDS4895.2" ; exon_id "ENSE00001612696.2" ; exon_number 1 ; gene_id "ZNF318--DST^ZNF318^ENSG00000171467.16" ; gene_name ZNF318 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014732.4" ; havana_transcript "OTTHUMT00000040601.3" ; hgnc_id "HGNC:13578" ; level 2 ; orig_coord_info "chr6,43368967,43369365,-" ; protein_id "ENSP00000354964.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZNF318--DST^ENST00000361428.3" ; transcript_name "ZNF318-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZSWIM6--CFTR HAVANA gene 27735 63516 . + . FI_gene_label "CFTR^ENSG00000001626.16" ; ID "ZSWIM6--CFTR^CFTR^ENSG00000001626.16" ; ccdsid "CCDS5773.1" ; exon_id "ENSE00001343851.2" ; exon_number 1 ; gene_id "ZSWIM6--CFTR^CFTR^ENSG00000001626.16" ; gene_name CFTR ; gene_type protein_coding ; havana_gene "OTTHUMG00000023076.18" ; havana_transcript "OTTHUMT00000059397.6" ; hgnc_id "HGNC:1884" ; level 2 ; orig_coord_info "chr7,117480095,117480147,+" ; protein_id "ENSP00000003084.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZSWIM6--CFTR^ENST00000003084.11" ; transcript_name "CFTR-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZSWIM6--CFTR HAVANA mRNA 27735 63516 . + . FI_gene_label "CFTR^ENSG00000001626.16" ; ID "ZSWIM6--CFTR^ENST00000003084.11" ; Parent "ZSWIM6--CFTR^CFTR^ENSG00000001626.16" ; ccdsid "CCDS5773.1" ; exon_id "ENSE00001343851.2" ; exon_number 1 ; gene_id "ZSWIM6--CFTR^CFTR^ENSG00000001626.16" ; gene_name CFTR ; gene_type protein_coding ; havana_gene "OTTHUMG00000023076.18" ; havana_transcript "OTTHUMT00000059397.6" ; hgnc_id "HGNC:1884" ; level 2 ; orig_coord_info "chr7,117480095,117480147,+" ; protein_id "ENSP00000003084.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZSWIM6--CFTR^ENST00000003084.11" ; transcript_name "CFTR-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZSWIM6--CFTR HAVANA gene 1001 18415 . + . FI_gene_label "ZSWIM6^ENSG00000130449.6" ; ID "ZSWIM6--CFTR^ZSWIM6^ENSG00000130449.6" ; ccdsid "CCDS47215.1" ; exon_id "ENSE00001593860.2" ; exon_number 1 ; gene_id "ZSWIM6--CFTR^ZSWIM6^ENSG00000130449.6" ; gene_name ZSWIM6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162388.2" ; havana_transcript "OTTHUMT00000368710.2" ; hgnc_id "HGNC:29316" ; level 1 ; orig_coord_info "chr5,61332273,61332948,+" ; protein_id "ENSP00000252744.5" ; tag not_organism_supported basic MANE_Select appris_principal_1 exp_conf CCDS ; transcript_id "ZSWIM6--CFTR^ENST00000252744.6" ; transcript_name "ZSWIM6-201" ; transcript_support_level 5 ; transcript_type protein_coding
ZSWIM6--CFTR HAVANA mRNA 1001 18415 . + . FI_gene_label "ZSWIM6^ENSG00000130449.6" ; ID "ZSWIM6--CFTR^ENST00000252744.6" ; Parent "ZSWIM6--CFTR^ZSWIM6^ENSG00000130449.6" ; ccdsid "CCDS47215.1" ; exon_id "ENSE00001593860.2" ; exon_number 1 ; gene_id "ZSWIM6--CFTR^ZSWIM6^ENSG00000130449.6" ; gene_name ZSWIM6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162388.2" ; havana_transcript "OTTHUMT00000368710.2" ; hgnc_id "HGNC:29316" ; level 1 ; orig_coord_info "chr5,61332273,61332948,+" ; protein_id "ENSP00000252744.5" ; tag not_organism_supported basic MANE_Select appris_principal_1 exp_conf CCDS ; transcript_id "ZSWIM6--CFTR^ENST00000252744.6" ; transcript_name "ZSWIM6-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
GSR--AC068672.1 HAVANA gene 22981 24170 . + . FI_gene_label "AC068672.1^ENSG00000253275.1" ; ID "GSR--AC068672.1^AC068672.1^ENSG00000253275.1" ; exon_id "ENSE00002135002.1" ; exon_number 1 ; gene_id "GSR--AC068672.1^AC068672.1^ENSG00000253275.1" ; gene_name "AC068672.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000163914.1" ; havana_transcript "OTTHUMT00000376377.1" ; level 2 ; orig_coord_info "chr8,31497423,31497556,+" ; tag basic ; transcript_id "GSR--AC068672.1^ENST00000520391.1" ; transcript_name "AC068672.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
GSR--AC068672.1 HAVANA RNA 22981 24170 . + . FI_gene_label "AC068672.1^ENSG00000253275.1" ; ID "GSR--AC068672.1^ENST00000520391.1" ; Parent "GSR--AC068672.1^AC068672.1^ENSG00000253275.1" ; exon_id "ENSE00002135002.1" ; exon_number 1 ; gene_id "GSR--AC068672.1^AC068672.1^ENSG00000253275.1" ; gene_name "AC068672.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000163914.1" ; havana_transcript "OTTHUMT00000376377.1" ; level 2 ; orig_coord_info "chr8,31497423,31497556,+" ; tag basic ; transcript_id "GSR--AC068672.1^ENST00000520391.1" ; transcript_name "AC068672.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
GSR--AC090816.1 HAVANA gene 22981 27250 . + . FI_gene_label "AC090816.1^ENSG00000287204.1" ; ID "GSR--AC090816.1^AC090816.1^ENSG00000287204.1" ; exon_id "ENSE00003864327.1" ; exon_number 1 ; gene_id "GSR--AC090816.1^AC090816.1^ENSG00000287204.1" ; gene_name "AC090816.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000195413.1" ; havana_transcript "OTTHUMT00000526800.1" ; level 2 ; orig_coord_info "chr8,31536630,31536726,+" ; tag basic TAGENE ; transcript_id "GSR--AC090816.1^ENST00000656443.1" ; transcript_name "AC090816.1-201" ; transcript_type lncRNA
GSR--AC090816.1 HAVANA RNA 22981 27250 . + . FI_gene_label "AC090816.1^ENSG00000287204.1" ; ID "GSR--AC090816.1^ENST00000656443.1" ; Parent "GSR--AC090816.1^AC090816.1^ENSG00000287204.1" ; exon_id "ENSE00003864327.1" ; exon_number 1 ; gene_id "GSR--AC090816.1^AC090816.1^ENSG00000287204.1" ; gene_name "AC090816.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000195413.1" ; havana_transcript "OTTHUMT00000526800.1" ; level 2 ; orig_coord_info "chr8,31536630,31536726,+" ; tag basic TAGENE ; transcript_id "GSR--AC090816.1^ENST00000656443.1" ; transcript_name "AC090816.1-201" ; transcript_type lncRNA
L1 and L2 created:
GSR--NRG1-IT3 HAVANA gene 23023 24971 . + . FI_gene_label "NRG1-IT3^ENSG00000254049.2" ; ID "GSR--NRG1-IT3^NRG1-IT3^ENSG00000254049.2" ; exon_id "ENSE00002125143.1" ; exon_number 1 ; gene_id "GSR--NRG1-IT3^NRG1-IT3^ENSG00000254049.2" ; gene_name "NRG1-IT3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000164003.2" ; havana_transcript "OTTHUMT00000376706.1" ; hgnc_id "HGNC:43635" ; level 2 ; orig_coord_info "chr8,32440746,32440781,+" ; tag basic ; transcript_id "GSR--NRG1-IT3^ENST00000519023.1" ; transcript_name "NRG1-IT3-201" ; transcript_support_level 3 ; transcript_type lncRNA
GSR--NRG1-IT3 HAVANA RNA 23023 24971 . + . FI_gene_label "NRG1-IT3^ENSG00000254049.2" ; ID "GSR--NRG1-IT3^ENST00000519023.1" ; Parent "GSR--NRG1-IT3^NRG1-IT3^ENSG00000254049.2" ; exon_id "ENSE00002125143.1" ; exon_number 1 ; gene_id "GSR--NRG1-IT3^NRG1-IT3^ENSG00000254049.2" ; gene_name "NRG1-IT3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000164003.2" ; havana_transcript "OTTHUMT00000376706.1" ; hgnc_id "HGNC:43635" ; level 2 ; orig_coord_info "chr8,32440746,32440781,+" ; tag basic ; transcript_id "GSR--NRG1-IT3^ENST00000519023.1" ; transcript_name "NRG1-IT3-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
TLK2--AL669831.1 HAVANA gene 41389 47379 . + . FI_gene_label "AL669831.1^ENSG00000228327.3" ; ID "TLK2--AL669831.1^AL669831.1^ENSG00000228327.3" ; exon_id "ENSE00001630466.1" ; exon_number 1 ; gene_id "TLK2--AL669831.1^AL669831.1^ENSG00000228327.3" ; gene_name "AL669831.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000002406.2" ; havana_transcript "OTTHUMT00000488438.1" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr1,774171,774280,-" ; tag basic ; transcript_id "TLK2--AL669831.1^ENST00000428504.2" ; transcript_name "AL669831.1-202" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
TLK2--AL669831.1 HAVANA RNA 41389 47379 . + . FI_gene_label "AL669831.1^ENSG00000228327.3" ; ID "TLK2--AL669831.1^ENST00000428504.2" ; Parent "TLK2--AL669831.1^AL669831.1^ENSG00000228327.3" ; exon_id "ENSE00001630466.1" ; exon_number 1 ; gene_id "TLK2--AL669831.1^AL669831.1^ENSG00000228327.3" ; gene_name "AL669831.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000002406.2" ; havana_transcript "OTTHUMT00000488438.1" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr1,774171,774280,-" ; tag basic ; transcript_id "TLK2--AL669831.1^ENST00000428504.2" ; transcript_name "AL669831.1-202" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
TLK2P1--AC110079.1 HAVANA RNA 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^ENST00000530992.1" ; Parent "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
TLK2P1--AC110079.1 HAVANA RNA 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^ENST00000567913.2" ; Parent "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
476 cases fixed where L3 features have parent feature(s) missing
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check5: l1 linked to l2 ----------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check6: remove orphan l1 ---------------------------
We remove only those not supposed to be orphan
None found
------------------------------ done in 0 seconds -------------------------------
------------------------- Check7: all level3 locations -------------------------
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check8: check cds -------------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check9: check exons ------------------------------
No exons created
No exons locations modified
No supernumerary exons removed
No level2 locations modified
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check10: check utrs ------------------------------
849 UTRs created that were missing
No UTRs locations modified
No supernumerary UTRs removed
------------------------------ done in 0 seconds -------------------------------
------------------------ Check11: all level2 locations -------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
------------------------ Check12: all level1 locations -------------------------
We fixed 42 wrong level1 location cases
------------------------------ done in 0 seconds -------------------------------
---------------------- Check13: remove identical isoforms ----------------------
None found
------------------------------ done in 0 seconds -------------------------------
------ End checks (done in 0 second) ------
GFF3 file parsed