File Info

Filename
aih-tih-sc-13d441-R1_A23YTGFLT4_1.Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/a085fbd289e2e08075078f1660e007/aih-tih-sc-13d441-R1_A23YTGFLT4_1.Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 07:37:47
                             Started mapping on |	Jun 08 07:39:49
                                    Finished on |	Jun 08 08:53:39
       Mapping speed, Million of reads per hour |	209.43

                          Number of input reads |	257719664
                      Average input read length |	245
                                    UNIQUE READS:
                   Uniquely mapped reads number |	247389389
                        Uniquely mapped reads % |	95.99%
                          Average mapped length |	245.22
                       Number of splices: Total |	267897019
            Number of splices: Annotated (sjdb) |	264151111
                       Number of splices: GT/AG |	265364127
                       Number of splices: GC/AG |	1777402
                       Number of splices: AT/AC |	187590
               Number of splices: Non-canonical |	567900
                      Mismatch rate per base, % |	0.20%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.06
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.62
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	6096224
             % of reads mapped to multiple loci |	2.37%
        Number of reads mapped to too many loci |	291071
             % of reads mapped to too many loci |	0.11%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	424573
       % of reads unmapped: too many mismatches |	0.16%
            Number of reads unmapped: too short |	1667659
                 % of reads unmapped: too short |	0.65%
                Number of reads unmapped: other |	194843
                     % of reads unmapped: other |	0.08%
                                  CHIMERIC READS:
                       Number of chimeric reads |	2856797
                            % of chimeric reads |	1.11%