Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/84ee569544c01cab63d1ac654afb45/aih-tih-sc-184b05-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/7a09e0371ea5850c991993348e5bb1/aih-tih-sc-184b05-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7d/db3ffca5cbe62423aae188f6cb58d3/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7d/db3ffca5cbe62423aae188f6cb58d3/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)
[32mRunning application...[0m
NPM1--VPS72
starfusion
AP006294.2--ENPP7P3
starfusion
FGD4--PIK3C2G
starfusion
arriba
GTF2F2--CBY2
starfusion
arriba
BICD1--ITPR2
starfusion
SELENBP1--FABP6-AS1
starfusion
AP006294.2--LINC00665
starfusion
ACTBP6--ACTB
starfusion
STX16--NPEPL1
starfusion
arriba
TLK2P1--AC110079.1
starfusion
ITPR2--AC048344.1
starfusion
AC004923.1--AC127526.2
starfusion
TLK2--BET1L
starfusion
STAG1--COPB2
starfusion
PDXDC2P--NPIPB3
starfusion
AGAP12P--FRMPD2
starfusion
PRPF40B--DERA
starfusion
TVP23C--CDRT4
arriba
TRPV5--AC245427.1
arriba
RMND5B--AC114321.1
arriba
RMND5B--AC026403.1
arriba
FZD10--PIWIL1
arriba
AC026336.1--PIWIL1
arriba
ZFAT--AC087667.1
arriba
ZFAT--AC084116.2
arriba
PCDHB14--PCDHB15
arriba
0%| | 0/26 [00:00<?, ?it/s]
Processing NPM1--VPS72: 0%| | 0/26 [00:00<?, ?it/s]
Processing NPM1--VPS72: 4%|▍ | 1/26 [00:00<00:02, 9.20it/s]
Processing AP006294.2--ENPP7P3: 4%|▍ | 1/26 [00:00<00:02, 9.20it/s]
Processing AP006294.2--ENPP7P3: 8%|▊ | 2/26 [00:00<00:02, 9.44it/s]
Processing FGD4--PIK3C2G: 8%|▊ | 2/26 [00:00<00:02, 9.44it/s]
Processing FGD4--PIK3C2G: 12%|█▏ | 3/26 [00:00<00:02, 9.52it/s]
Processing GTF2F2--CBY2: 12%|█▏ | 3/26 [00:00<00:02, 9.52it/s]
Processing GTF2F2--CBY2: 15%|█▌ | 4/26 [00:00<00:02, 9.56it/s]
Processing BICD1--ITPR2: 15%|█▌ | 4/26 [00:00<00:02, 9.56it/s]
Processing BICD1--ITPR2: 19%|█▉ | 5/26 [00:00<00:02, 9.58it/s]
Processing SELENBP1--FABP6-AS1: 19%|█▉ | 5/26 [00:00<00:02, 9.58it/s]
Processing SELENBP1--FABP6-AS1: 23%|██▎ | 6/26 [00:00<00:02, 9.60it/s]
Processing AP006294.2--LINC00665: 23%|██▎ | 6/26 [00:00<00:02, 9.60it/s]
Processing AP006294.2--LINC00665: 27%|██▋ | 7/26 [00:00<00:01, 9.61it/s]
Processing ACTBP6--ACTB: 27%|██▋ | 7/26 [00:00<00:01, 9.61it/s]
Processing ACTBP6--ACTB: 31%|███ | 8/26 [00:00<00:01, 9.61it/s]
Processing STX16--NPEPL1: 31%|███ | 8/26 [00:00<00:01, 9.61it/s]
Processing STX16--NPEPL1: 35%|███▍ | 9/26 [00:00<00:01, 9.62it/s]
Processing TLK2P1--AC110079.1: 35%|███▍ | 9/26 [00:00<00:01, 9.62it/s]
Processing TLK2P1--AC110079.1: 38%|███▊ | 10/26 [00:01<00:01, 9.62it/s]
Processing ITPR2--AC048344.1: 38%|███▊ | 10/26 [00:01<00:01, 9.62it/s]
Processing ITPR2--AC048344.1: 42%|████▏ | 11/26 [00:01<00:01, 9.62it/s]
Processing AC004923.1--AC127526.2: 42%|████▏ | 11/26 [00:01<00:01, 9.62it/s]
Processing AC004923.1--AC127526.2: 46%|████▌ | 12/26 [00:01<00:01, 9.63it/s]
Processing TLK2--BET1L: 46%|████▌ | 12/26 [00:01<00:01, 9.63it/s]
Processing TLK2--BET1L: 50%|█████ | 13/26 [00:01<00:01, 9.63it/s]
Processing STAG1--COPB2: 50%|█████ | 13/26 [00:01<00:01, 9.63it/s]
Processing STAG1--COPB2: 54%|█████▍ | 14/26 [00:01<00:01, 9.63it/s]
Processing PDXDC2P--NPIPB3: 54%|█████▍ | 14/26 [00:01<00:01, 9.63it/s]
Processing PDXDC2P--NPIPB3: 58%|█████▊ | 15/26 [00:01<00:01, 9.63it/s]
Processing AGAP12P--FRMPD2: 58%|█████▊ | 15/26 [00:01<00:01, 9.63it/s]
Processing AGAP12P--FRMPD2: 62%|██████▏ | 16/26 [00:01<00:01, 9.63it/s]
Processing PRPF40B--DERA: 62%|██████▏ | 16/26 [00:01<00:01, 9.63it/s]
Processing PRPF40B--DERA: 65%|██████▌ | 17/26 [00:01<00:00, 9.63it/s]
Processing TVP23C--CDRT4: 65%|██████▌ | 17/26 [00:01<00:00, 9.63it/s]
Processing TVP23C--CDRT4: 69%|██████▉ | 18/26 [00:01<00:00, 9.63it/s]
Processing TRPV5--AC245427.1: 69%|██████▉ | 18/26 [00:01<00:00, 9.63it/s]
Processing TRPV5--AC245427.1: 73%|███████▎ | 19/26 [00:01<00:00, 9.63it/s]
Processing RMND5B--AC114321.1: 73%|███████▎ | 19/26 [00:01<00:00, 9.63it/s]
Processing RMND5B--AC114321.1: 77%|███████▋ | 20/26 [00:02<00:00, 9.63it/s]
Processing RMND5B--AC026403.1: 77%|███████▋ | 20/26 [00:02<00:00, 9.63it/s]
Processing RMND5B--AC026403.1: 81%|████████ | 21/26 [00:02<00:00, 9.63it/s]
Processing FZD10--PIWIL1: 81%|████████ | 21/26 [00:02<00:00, 9.63it/s]
Processing FZD10--PIWIL1: 85%|████████▍ | 22/26 [00:02<00:00, 9.63it/s]
Processing AC026336.1--PIWIL1: 85%|████████▍ | 22/26 [00:02<00:00, 9.63it/s]
Processing AC026336.1--PIWIL1: 88%|████████▊ | 23/26 [00:02<00:00, 9.63it/s]
Processing ZFAT--AC087667.1: 88%|████████▊ | 23/26 [00:02<00:00, 9.63it/s]
Processing ZFAT--AC087667.1: 92%|█████████▏| 24/26 [00:02<00:00, 9.63it/s]
Processing ZFAT--AC084116.2: 92%|█████████▏| 24/26 [00:02<00:00, 9.63it/s]
Processing ZFAT--AC084116.2: 96%|█████████▌| 25/26 [00:02<00:00, 9.63it/s]
Processing PCDHB14--PCDHB15: 96%|█████████▌| 25/26 [00:02<00:00, 9.63it/s]
Processing PCDHB14--PCDHB15: 100%|██████████| 26/26 [00:02<00:00, 9.63it/s]
Processing PCDHB14--PCDHB15: 100%|██████████| 26/26 [00:02<00:00, 9.61it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory