Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/84ee569544c01cab63d1ac654afb45/aih-tih-sc-184b05-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/7a09e0371ea5850c991993348e5bb1/aih-tih-sc-184b05-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7d/db3ffca5cbe62423aae188f6cb58d3/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7d/db3ffca5cbe62423aae188f6cb58d3/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
NPM1--VPS72
starfusion
AP006294.2--ENPP7P3
starfusion
FGD4--PIK3C2G
starfusion
arriba
GTF2F2--CBY2
starfusion
arriba
BICD1--ITPR2
starfusion
SELENBP1--FABP6-AS1
starfusion
AP006294.2--LINC00665
starfusion
ACTBP6--ACTB
starfusion
STX16--NPEPL1
starfusion
arriba
TLK2P1--AC110079.1
starfusion
ITPR2--AC048344.1
starfusion
AC004923.1--AC127526.2
starfusion
TLK2--BET1L
starfusion
STAG1--COPB2
starfusion
PDXDC2P--NPIPB3
starfusion
AGAP12P--FRMPD2
starfusion
PRPF40B--DERA
starfusion
TVP23C--CDRT4
arriba
TRPV5--AC245427.1
arriba
RMND5B--AC114321.1
arriba
RMND5B--AC026403.1
arriba
FZD10--PIWIL1
arriba
AC026336.1--PIWIL1
arriba
ZFAT--AC087667.1
arriba
ZFAT--AC084116.2
arriba
PCDHB14--PCDHB15
arriba

  0%|          | 0/26 [00:00<?, ?it/s]
Processing NPM1--VPS72:   0%|          | 0/26 [00:00<?, ?it/s]
Processing NPM1--VPS72:   4%|▍         | 1/26 [00:00<00:02,  9.20it/s]
Processing AP006294.2--ENPP7P3:   4%|▍         | 1/26 [00:00<00:02,  9.20it/s]
Processing AP006294.2--ENPP7P3:   8%|▊         | 2/26 [00:00<00:02,  9.44it/s]
Processing FGD4--PIK3C2G:   8%|▊         | 2/26 [00:00<00:02,  9.44it/s]      
Processing FGD4--PIK3C2G:  12%|█▏        | 3/26 [00:00<00:02,  9.52it/s]
Processing GTF2F2--CBY2:  12%|█▏        | 3/26 [00:00<00:02,  9.52it/s] 
Processing GTF2F2--CBY2:  15%|█▌        | 4/26 [00:00<00:02,  9.56it/s]
Processing BICD1--ITPR2:  15%|█▌        | 4/26 [00:00<00:02,  9.56it/s]
Processing BICD1--ITPR2:  19%|█▉        | 5/26 [00:00<00:02,  9.58it/s]
Processing SELENBP1--FABP6-AS1:  19%|█▉        | 5/26 [00:00<00:02,  9.58it/s]
Processing SELENBP1--FABP6-AS1:  23%|██▎       | 6/26 [00:00<00:02,  9.60it/s]
Processing AP006294.2--LINC00665:  23%|██▎       | 6/26 [00:00<00:02,  9.60it/s]
Processing AP006294.2--LINC00665:  27%|██▋       | 7/26 [00:00<00:01,  9.61it/s]
Processing ACTBP6--ACTB:  27%|██▋       | 7/26 [00:00<00:01,  9.61it/s]         
Processing ACTBP6--ACTB:  31%|███       | 8/26 [00:00<00:01,  9.61it/s]
Processing STX16--NPEPL1:  31%|███       | 8/26 [00:00<00:01,  9.61it/s]
Processing STX16--NPEPL1:  35%|███▍      | 9/26 [00:00<00:01,  9.62it/s]
Processing TLK2P1--AC110079.1:  35%|███▍      | 9/26 [00:00<00:01,  9.62it/s]
Processing TLK2P1--AC110079.1:  38%|███▊      | 10/26 [00:01<00:01,  9.62it/s]
Processing ITPR2--AC048344.1:  38%|███▊      | 10/26 [00:01<00:01,  9.62it/s] 
Processing ITPR2--AC048344.1:  42%|████▏     | 11/26 [00:01<00:01,  9.62it/s]
Processing AC004923.1--AC127526.2:  42%|████▏     | 11/26 [00:01<00:01,  9.62it/s]
Processing AC004923.1--AC127526.2:  46%|████▌     | 12/26 [00:01<00:01,  9.63it/s]
Processing TLK2--BET1L:  46%|████▌     | 12/26 [00:01<00:01,  9.63it/s]           
Processing TLK2--BET1L:  50%|█████     | 13/26 [00:01<00:01,  9.63it/s]
Processing STAG1--COPB2:  50%|█████     | 13/26 [00:01<00:01,  9.63it/s]
Processing STAG1--COPB2:  54%|█████▍    | 14/26 [00:01<00:01,  9.63it/s]
Processing PDXDC2P--NPIPB3:  54%|█████▍    | 14/26 [00:01<00:01,  9.63it/s]
Processing PDXDC2P--NPIPB3:  58%|█████▊    | 15/26 [00:01<00:01,  9.63it/s]
Processing AGAP12P--FRMPD2:  58%|█████▊    | 15/26 [00:01<00:01,  9.63it/s]
Processing AGAP12P--FRMPD2:  62%|██████▏   | 16/26 [00:01<00:01,  9.63it/s]
Processing PRPF40B--DERA:  62%|██████▏   | 16/26 [00:01<00:01,  9.63it/s]  
Processing PRPF40B--DERA:  65%|██████▌   | 17/26 [00:01<00:00,  9.63it/s]
Processing TVP23C--CDRT4:  65%|██████▌   | 17/26 [00:01<00:00,  9.63it/s]
Processing TVP23C--CDRT4:  69%|██████▉   | 18/26 [00:01<00:00,  9.63it/s]
Processing TRPV5--AC245427.1:  69%|██████▉   | 18/26 [00:01<00:00,  9.63it/s]
Processing TRPV5--AC245427.1:  73%|███████▎  | 19/26 [00:01<00:00,  9.63it/s]
Processing RMND5B--AC114321.1:  73%|███████▎  | 19/26 [00:01<00:00,  9.63it/s]
Processing RMND5B--AC114321.1:  77%|███████▋  | 20/26 [00:02<00:00,  9.63it/s]
Processing RMND5B--AC026403.1:  77%|███████▋  | 20/26 [00:02<00:00,  9.63it/s]
Processing RMND5B--AC026403.1:  81%|████████  | 21/26 [00:02<00:00,  9.63it/s]
Processing FZD10--PIWIL1:  81%|████████  | 21/26 [00:02<00:00,  9.63it/s]     
Processing FZD10--PIWIL1:  85%|████████▍ | 22/26 [00:02<00:00,  9.63it/s]
Processing AC026336.1--PIWIL1:  85%|████████▍ | 22/26 [00:02<00:00,  9.63it/s]
Processing AC026336.1--PIWIL1:  88%|████████▊ | 23/26 [00:02<00:00,  9.63it/s]
Processing ZFAT--AC087667.1:  88%|████████▊ | 23/26 [00:02<00:00,  9.63it/s]  
Processing ZFAT--AC087667.1:  92%|█████████▏| 24/26 [00:02<00:00,  9.63it/s]
Processing ZFAT--AC084116.2:  92%|█████████▏| 24/26 [00:02<00:00,  9.63it/s]
Processing ZFAT--AC084116.2:  96%|█████████▌| 25/26 [00:02<00:00,  9.63it/s]
Processing PCDHB14--PCDHB15:  96%|█████████▌| 25/26 [00:02<00:00,  9.63it/s]
Processing PCDHB14--PCDHB15: 100%|██████████| 26/26 [00:02<00:00,  9.63it/s]
Processing PCDHB14--PCDHB15: 100%|██████████| 26/26 [00:02<00:00,  9.61it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory