File Info
- Filename
- aih-tih-sc-184b05-R1_A23YTGFLT4_1.fusions.csv
- Full Path
- s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7d/db3ffca5cbe62423aae188f6cb58d3/aih-tih-sc-184b05-R1_A23YTGFLT4_1.fusions.csv
- Size
- 5.1 KB
- Task
- NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-184b05-R1_A23YTGFLT4_1)
- Attempt
Content
View in new tab| Fusion | Databases | Score | Explained score | arriba | starfusion |
| NPM1--VPS72 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:171392978:+#chr1:151185950:-,junction_reads: 51,spanning_reads: 0,ffmp: 0.1705 | ||
| AP006294.2--ENPP7P3 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr11:3580927:-#chr3:130167943:-,junction_reads: 38,spanning_reads: 0,ffmp: 0.1282 | ||
| FGD4--PIK3C2G | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr12:32399959#chr12:18594494,reading-frame: out-of-frame,type: duplication,split_reads1: 23,split_reads2: 15,discordant_mates: 1,coverage1: 4770,coverage2: 57,confidence: high | position: chr12:32399959:+#chr12:18594494:+,junction_reads: 38,spanning_reads: 2,ffmp: 0.1349 | |
| GTF2F2--CBY2 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr13:45120721#chr13:45713182,reading-frame: in-frame,type: deletion,split_reads1: 12,split_reads2: 14,discordant_mates: 0,coverage1: 3341,coverage2: 77,confidence: high | position: chr13:45120721:+#chr13:45713182:+,junction_reads: 27,spanning_reads: 0,ffmp: 0.0911 | |
| BICD1--ITPR2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr12:32216459:+#chr12:26790227:-,junction_reads: 22,spanning_reads: 0,ffmp: 0.0742 | ||
| SELENBP1--FABP6-AS1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr1:151372638:-#chr5:160199171:-,junction_reads: 18,spanning_reads: 0,ffmp: 0.0607 | ||
| AP006294.2--LINC00665 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr11:3580927:-#chr19:36329430:-,junction_reads: 18,spanning_reads: 0,ffmp: 0.0607 | ||
| ACTBP6--ACTB | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr8:84948968:+#chr7:5528696:-,junction_reads: 15,spanning_reads: 0,ffmp: 0.0506 | ||
| STX16--NPEPL1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr20:58673711#chr20:58691724,reading-frame: .,type: deletion/read-through,split_reads1: 63,split_reads2: 47,discordant_mates: 1,coverage1: 1948,coverage2: 542,confidence: high | position: chr20:58673711:+#chr20:58691724:+,junction_reads: 12,spanning_reads: 0,ffmp: 0.0405 | |
| TLK2P1--AC110079.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:34039043:-#chr4:118595912:+,junction_reads: 11,spanning_reads: 0,ffmp: 0.0341 | ||
| ITPR2--AC048344.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr12:26628033:-#chr12:32104773:-,junction_reads: 10,spanning_reads: 0,ffmp: 0.0337 | ||
| AC004923.1--AC127526.2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr11:67955482:-#chr11:3515198:-,junction_reads: 10,spanning_reads: 0,ffmp: 0.0247 | ||
| TLK2--BET1L | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:62560126:+#chr11:169052:-,junction_reads: 9,spanning_reads: 0,ffmp: 0.0088 | ||
| STAG1--COPB2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr3:136417885:-#chr3:139383435:-,junction_reads: 8,spanning_reads: 0,ffmp: 0.027 | ||
| PDXDC2P--NPIPB3 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr16:70010751:-#chr16:21425378:-,junction_reads: 8,spanning_reads: 0,ffmp: 0.0065 | ||
| AGAP12P--FRMPD2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr10:48025897:-#chr10:48181008:-,junction_reads: 8,spanning_reads: 0,ffmp: 0.009 | ||
| PRPF40B--DERA | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr12:49637824:+#chr12:15956936:+,junction_reads: 7,spanning_reads: 1,ffmp: 0.027 | ||
| TVP23C--CDRT4 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr17:15503098#chr17:15440285,reading-frame: stop-codon,type: deletion/read-through,split_reads1: 71,split_reads2: 37,discordant_mates: 1,coverage1: 993,coverage2: 381,confidence: high | |
| TRPV5--AC245427.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr7:142909490#chr7:142890082,reading-frame: out-of-frame,type: deletion/read-through/5'-5',split_reads1: 12,split_reads2: 8,discordant_mates: 0,coverage1: 539,coverage2: 57,confidence: high | ||
| RMND5B--AC114321.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:178142992#chr5:166218190,reading-frame: .,type: duplication,split_reads1: 14,split_reads2: 0,discordant_mates: 1,coverage1: 1024,coverage2: 1,confidence: high | ||
| RMND5B--AC026403.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:178142992#chr5:166218190,reading-frame: .,type: duplication,split_reads1: 14,split_reads2: 0,discordant_mates: 1,coverage1: 1024,coverage2: 1,confidence: high | ||
| FZD10--PIWIL1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr12:130198223#chr12:130342580,reading-frame: .,type: deletion/read-through,split_reads1: 5,split_reads2: 9,discordant_mates: 0,coverage1: 9,coverage2: 331,confidence: high | ||
| AC026336.1--PIWIL1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr12:130198223#chr12:130342580,reading-frame: .,type: deletion/read-through,split_reads1: 5,split_reads2: 9,discordant_mates: 0,coverage1: 9,coverage2: 331,confidence: high | ||
| ZFAT--AC087667.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr8:134583832#chr8:126424885,reading-frame: out-of-frame,type: inversion,split_reads1: 10,split_reads2: 1,discordant_mates: 0,coverage1: 195,coverage2: 1,confidence: high | ||
| ZFAT--AC084116.2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr8:134583832#chr8:126424885,reading-frame: out-of-frame,type: inversion,split_reads1: 10,split_reads2: 1,discordant_mates: 0,coverage1: 195,coverage2: 1,confidence: high | ||
| PCDHB14--PCDHB15 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141223541#chr5:141245484,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 1,split_reads2: 9,discordant_mates: 0,coverage1: 208,coverage2: 132,confidence: high |
27 rows