Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/9e670acbb9df3aebc2f1562191a53b/aih-tih-sc-cece97-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/e32cf3187a6ccdbe47d8abab038365/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/e32cf3187a6ccdbe47d8abab038365/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a0/4e64ca1f0df46b21be32115d240dd9/aih-tih-sc-cece97-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)
[32mRunning application...[0m
TLK2P1--AC110079.1
starfusion
PRSS27--TPSB2
starfusion
TLK2--LINC01347
starfusion
COL1A1--SLC45A4
starfusion
SIRT2--CAPN12
starfusion
STX16--NPEPL1
arriba
TVP23C--CDRT4
arriba
GTF2A1L--STON1-GTF2A1L
arriba
AP001347.1--ANKRD20A11P
arriba
SDHDP6--TEX12
arriba
0%| | 0/10 [00:00<?, ?it/s]
Processing TLK2P1--AC110079.1: 0%| | 0/10 [00:00<?, ?it/s]
Processing TLK2P1--AC110079.1: 10%|█ | 1/10 [00:00<00:00, 9.24it/s]
Processing PRSS27--TPSB2: 10%|█ | 1/10 [00:00<00:00, 9.24it/s]
Processing PRSS27--TPSB2: 20%|██ | 2/10 [00:00<00:00, 9.47it/s]
Processing TLK2--LINC01347: 20%|██ | 2/10 [00:00<00:00, 9.47it/s]
Processing TLK2--LINC01347: 30%|███ | 3/10 [00:00<00:00, 9.55it/s]
Processing COL1A1--SLC45A4: 30%|███ | 3/10 [00:00<00:00, 9.55it/s]
Processing COL1A1--SLC45A4: 40%|████ | 4/10 [00:00<00:00, 9.59it/s]
Processing SIRT2--CAPN12: 40%|████ | 4/10 [00:00<00:00, 9.59it/s]
Processing SIRT2--CAPN12: 50%|█████ | 5/10 [00:00<00:00, 9.61it/s]
Processing STX16--NPEPL1: 50%|█████ | 5/10 [00:00<00:00, 9.61it/s]
Processing STX16--NPEPL1: 60%|██████ | 6/10 [00:00<00:00, 9.62it/s]
Processing TVP23C--CDRT4: 60%|██████ | 6/10 [00:00<00:00, 9.62it/s]
Processing TVP23C--CDRT4: 70%|███████ | 7/10 [00:00<00:00, 9.62it/s]
Processing GTF2A1L--STON1-GTF2A1L: 70%|███████ | 7/10 [00:00<00:00, 9.62it/s]
Processing GTF2A1L--STON1-GTF2A1L: 80%|████████ | 8/10 [00:00<00:00, 9.63it/s]
Processing AP001347.1--ANKRD20A11P: 80%|████████ | 8/10 [00:00<00:00, 9.63it/s]
Processing AP001347.1--ANKRD20A11P: 90%|█████████ | 9/10 [00:00<00:00, 9.63it/s]
Processing SDHDP6--TEX12: 90%|█████████ | 9/10 [00:00<00:00, 9.63it/s]
Processing SDHDP6--TEX12: 100%|██████████| 10/10 [00:01<00:00, 9.63it/s]
Processing SDHDP6--TEX12: 100%|██████████| 10/10 [00:01<00:00, 9.60it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory