Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/9e670acbb9df3aebc2f1562191a53b/aih-tih-sc-cece97-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/e32cf3187a6ccdbe47d8abab038365/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/e32cf3187a6ccdbe47d8abab038365/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a0/4e64ca1f0df46b21be32115d240dd9/aih-tih-sc-cece97-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
TLK2P1--AC110079.1
starfusion
PRSS27--TPSB2
starfusion
TLK2--LINC01347
starfusion
COL1A1--SLC45A4
starfusion
SIRT2--CAPN12
starfusion
STX16--NPEPL1
arriba
TVP23C--CDRT4
arriba
GTF2A1L--STON1-GTF2A1L
arriba
AP001347.1--ANKRD20A11P
arriba
SDHDP6--TEX12
arriba

  0%|          | 0/10 [00:00<?, ?it/s]
Processing TLK2P1--AC110079.1:   0%|          | 0/10 [00:00<?, ?it/s]
Processing TLK2P1--AC110079.1:  10%|█         | 1/10 [00:00<00:00,  9.24it/s]
Processing PRSS27--TPSB2:  10%|█         | 1/10 [00:00<00:00,  9.24it/s]     
Processing PRSS27--TPSB2:  20%|██        | 2/10 [00:00<00:00,  9.47it/s]
Processing TLK2--LINC01347:  20%|██        | 2/10 [00:00<00:00,  9.47it/s]
Processing TLK2--LINC01347:  30%|███       | 3/10 [00:00<00:00,  9.55it/s]
Processing COL1A1--SLC45A4:  30%|███       | 3/10 [00:00<00:00,  9.55it/s]
Processing COL1A1--SLC45A4:  40%|████      | 4/10 [00:00<00:00,  9.59it/s]
Processing SIRT2--CAPN12:  40%|████      | 4/10 [00:00<00:00,  9.59it/s]  
Processing SIRT2--CAPN12:  50%|█████     | 5/10 [00:00<00:00,  9.61it/s]
Processing STX16--NPEPL1:  50%|█████     | 5/10 [00:00<00:00,  9.61it/s]
Processing STX16--NPEPL1:  60%|██████    | 6/10 [00:00<00:00,  9.62it/s]
Processing TVP23C--CDRT4:  60%|██████    | 6/10 [00:00<00:00,  9.62it/s]
Processing TVP23C--CDRT4:  70%|███████   | 7/10 [00:00<00:00,  9.62it/s]
Processing GTF2A1L--STON1-GTF2A1L:  70%|███████   | 7/10 [00:00<00:00,  9.62it/s]
Processing GTF2A1L--STON1-GTF2A1L:  80%|████████  | 8/10 [00:00<00:00,  9.63it/s]
Processing AP001347.1--ANKRD20A11P:  80%|████████  | 8/10 [00:00<00:00,  9.63it/s]
Processing AP001347.1--ANKRD20A11P:  90%|█████████ | 9/10 [00:00<00:00,  9.63it/s]
Processing SDHDP6--TEX12:  90%|█████████ | 9/10 [00:00<00:00,  9.63it/s]          
Processing SDHDP6--TEX12: 100%|██████████| 10/10 [00:01<00:00,  9.63it/s]
Processing SDHDP6--TEX12: 100%|██████████| 10/10 [00:01<00:00,  9.60it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory