Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/aab5eb60dffe8de807e0e39dbf7e04/aih-tih-sc-885658-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/76eeebaaf49f4f40057f345d543ce6/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/76eeebaaf49f4f40057f345d543ce6/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9c/8facf9d50f61f30daff7b2f755ee3f/aih-tih-sc-885658-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory